BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19870.1
Length=2956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312915 jgi|Araly1|312915|fgenesh1_pm.C_scaffold_1001695 3746 0.0
> Ahg312915 jgi|Araly1|312915|fgenesh1_pm.C_scaffold_1001695
Length=2379
Score = 3746 bits (2028), Expect = 0.0
Identities = 2272/2390 (95%), Gaps = 16/2390 (1%)
Strand=Plus/Plus
Query 187 ATGGGAAGATCTCCAGCTTCTTCTTGTCTCCGTCTCATCTCTTGCTCCGGCGGTGATGAT 246
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGAAGATCTCCAGCTTCTTCTTGTCTCCGTCTCATCGCTTGCTCCGGCGGTGATGAT 60
Query 247 ACCTCCGCCGATCCTAACTCCACCGCCCTCGAGAACAAGAGCTCTGGGGATAAGCGTGGA 306
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GCCT---CCGATCCTAACTCCACCGCCCTCGAGAACAAGAGCTCTGGTGATAAGCGTGGA 117
Query 307 TGGAGTTTCAGGAAGAAATCTGGGAAACAGCGAGGGTTGATTACTAGTGTAGTTTCTGAA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 TGGAGTTTCAGGAAGAAATCTGGGAAACAGCGAGGGTTGATTACTAGTGTAGTCTCTGAA 177
Query 367 ACTACTCCTGCTTCTAGGACTAGAGAGACTCTTGAATCTGCTCTCCTTAAATCTCCGTCT 426
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 ACTACTCCTGCTTCTAGGACTAGAGAAACTCTTGAATCTGCTCTCCTTAAATCTCCGTCT 237
Query 427 CCTGATAATAACAATGTTTCTGAAAAACAGCAGCAGTCTTTCTCTGTTGATGAAAAGAAG 486
||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 238 CCTGACAATAACAATGTTTCTGAAAAGCAGCAGCAGTCATTCTCTGTTGATGAGAAGAAG 297
Query 487 AGTCAGTTACCTGTTGTTACCTATGTGGCTGAGCCTGTGGATGAGaaaaaaaCACAGTCT 546
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 AGTCAGTTACCTGTTGTTACCTATGTGGCTGAACCTGTGGATGAGAAAAAAACACAGTCC 357
Query 547 GTTATTGAGGAGAAGACGGAGTTGTTGTCAGTGGAGGAACAGATTGACCATAGAACTGAG 606
| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 358 G---TTGAGGAGAAGACGGAGTTGTCGTCAGTGGAGGAACAGATTGACCACAGAACTGAG 414
Query 607 GTGTCGCCTGTTATTGTGGAATCAAAAGGGACTGAAACTGAGGAAGATGATTTGATTGGA 666
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 415 GTGTCGCCTGTTATTGTGGAATCGAAAGGGACTGAGACTGAGGAAGATGATTTGATTGGA 474
Query 667 ACTGAATTGCAAGGACCAAGTGCTGCTGATGCAGCCAAGATAGAGGAAGATGTTACTTCC 726
||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 475 ACTGAATTGCAAGGACCAAATGCTGATGATGCAGCCAAGATAGAGAAAGATGTTACTTCC 534
Query 727 GAGGTTGAAATGGCTAGTAAGGTTGAGCCGGAAGAATCTGAATCCGATGATGTGATTA-T 785
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 535 GAGGTTGAAATTGCTAGTAAGGTTGAGCCGGAAGAATCTGAAACCGATGATGTGATTATT 594
Query 786 AGTTAGAAAAGAAAGTGATGAAAAAGTTGATGAGAAGCTGGATGAGTCTGTTATCGTTGT 845
| | || ||||||||||||||||| |||||||||| |||||||||||||||| |||| ||
Sbjct 595 A-TCAGTAAAGAAAGTGATGAAAATGTTGATGAGATGCTGGATGAGTCTGTTGTCGTGGT 653
Query 846 CATCCAAGCTGCTGTTCGTGGTTTTTTGGCGCGAAGAGAACTTTTAAGGAGCAAGAAAGT 905
||||||||||||| ||||||| ||||||| ||||||||||||||| ||| ||||||||||
Sbjct 654 CATCCAAGCTGCTATTCGTGGATTTTTGGTGCGAAGAGAACTTTTGAGGCGCAAGAAAGT 713
Query 906 TATTAAACTCCAAGCTGCAGTTCGTGGCCACCTGGTTAGGAGTCAGGCCATGGGATCACT 965
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 714 TATTAAACTTCAAGCTGCAGTTCGTGGCCACCTGGTTAGGAGCCAGGCCATGGGATCACT 773
Query 966 GCGTTGTGTCCAAGCTATTGTCAAGATGCAGGCGATGGTTCGTGCTCGTCATTCCACAAA 1025
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 774 GCGTTGTGTCCAAGCTATTGTCAAGATGCAGGCTATGGTTCGTGCTCGTCATTCCACAAA 833
Query 1026 AGATGGTAGCCGTGTTTCAGCAACCTCGGATAAGTCGGAACCAAATGCAGCTGCACAAAA 1085
||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 834 AGATGGTAGCCGTGTTTCAGCAATCTCGGATAAGGCGGAAGGAAATGGAGCTGCACAAAA 893
Query 1086 ACTTCTAGAAAACAAGTTTGCTAAGCATCTAATGGAGTCAACTCCCAAGACAAAACCTAT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 ACTTCTAGAAAACAAGTTTGCTAAGCATCTAATGGAGTCAACTCCCAAGACAAAACCAAT 953
Query 1146 CAACATTAAATGTGATCCTACAAAACCTAGTTCTGCTTGGAACTGGTTGGAGAGGTGGAT 1205
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 954 CAGCATTAAATGTGATCCAACAAAACCTAGTTCTGCCTGGAACTGGTTGGAGAGGTGGAT 1013
Query 1206 GTCTGTTCCAAAACCTGAGAAGACTTCTAAAGCAAATTTGACAACGGAAGAGCAAAATTT 1265
||||||||||||||||||||||||||| |||||| | |||||||| ||||||||| | ||
Sbjct 1014 GTCTGTTCCAAAACCTGAGAAGACTTCAAAAGCAGAGTTGACAACTGAAGAGCAACAGTT 1073
Query 1266 GGAAGAAACACAGAATGTTAAAATATCACCTCAAGCTGACTTTGTGAATTCTGACTCAAC 1325
|||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct 1074 GGAAGAAACACAGAGTGTTAAAGTATCACCTCAAGTTGACTTTGTGAACTCTGACTCAAC 1133
Query 1326 GGTAGAGAACAAAACTGAAACTGATATGCCAAGCTATGAAGCAAGTAAGGTAGAAGGTCA 1385
|||||||| |||||| ||||||||| || |||||||||||||||||||| ||| || |||
Sbjct 1134 GGTAGAGACCAAAACGGAAACTGATTTGTCAAGCTATGAAGCAAGTAAGCTAGCAGCTCA 1193
Query 1386 GAATGTGGAGCTATCTGAGACAGAGAAAATGAGCCAATATGATTCACCAGAAGCATCAGC 1445
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1194 GCATGTGGAGCTATCTGAAACAGAAAAAATGAGCCAATATGATTCACCAGAAGCATCAGC 1253
Query 1446 GGAGGTTTATTATGACTCAATCCAGTCTCAGCCACTTGCTGCT-A--AACCAGATTCTTT 1502
||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1254 GGAGGTTTATTATGACTCAATCCAGTCTCAGCCACTTACTGCTAAGGAACCAGATTCTTT 1313
Query 1503 GCTCGAAGAGCCTGAATATGTGGATGGACAGATTAAACATTCTTTGAAGCGTAAGGTTAG 1562
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1314 GCTCGAAGAGCCTGAATATGTGGTTGGACAGCTTAAACATTCTTTGAAGCGTAAGGTTAG 1373
Query 1563 CAATCCTTCTTTCATTGCCGCACAGTCGAAGTTTGAGGAACTAACTTCATCTACTGGTTC 1622
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CAACCCTTCTTTCATTGCTGCACAGTCGAAGTTTGAGGAACTAACTTCATCTACTGGTTC 1433
Query 1623 AAACAAAGCAATGACGCTGTCTTCTAAAGATGATGTTTTGGGTGAAGAAGGCAAAACAGA 1682
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1434 AAACAAAGCAATGACGCTGTCTTCTAAAGATGGTGTTTCGGGTGAAGACGGCAAAACAGA 1493
Query 1683 TATAGATTCACCAGACACTACAAACACTATAAAGGATCACTCTTTGGAAGATGTTACTCC 1742
||||| |||| | ||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1494 TATAGGTTCA-C--ACACTACAAACACTAAAAAGGATCACTCTCTGGAAGATGTTACTCC 1550
Query 1743 AGCTGAGCTTAGTGGATCCGAGTGTGGCACCGAACTCTCTGTAACTTCTTCTCTTGACAC 1802
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1551 AGCTGAGCTCAGTGGATCCGAGTGTGGCACCGAACTCTCTGTAACTTCTTCTCTTGACTC 1610
Query 1803 ACTTGAGAAGAAGTCAGACGCTGAGGGTGCAGAGCCCAGGGTAGAAGCTAAGCTTTTAGA 1862
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1611 ACTTGAGAAGAAGTCAGACGCTGAAGGTGCAGAGCCCAGGGTAGAAGCTAAGCTTTTAGA 1670
Query 1863 GGATGACACTTTTAAAACAGACCAAGCAGAGTTGATAGAAATTGATGTTAAAGACGCAAC 1922
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GGATGACAGTTTTAAAACAGACCAAGCAGAGTTGATAGAAATTGATGTTAAAGACGCAAC 1730
Query 1923 GTCAATGGGTACTGTAGAGGACCCTAAGGAGAAAGTTGAGAATGCTAAGGACGAAGTTGA 1982
|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1731 GTCATTGGGTATTGTAGAGGACCCTAAGGAGAAAGTTGAGAATGCTAAGGATGAAGTTGA 1790
Query 1983 AATTTCAGCGACACATCATGAACCGGTCATTAGTACACCAGATTCCAAAAAGAGACGGGC 2042
||| |||| |||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1791 AATCTCAGTGACACAGCATGAATCGGTTGTTAGTACACCAGATTCCAAAAAGAGACGGGC 1850
Query 2043 TGAAGATGAATCAGGGCCTCAAGCTTACGCC-TTATCTGAGGGAGCTTTAACTCCGATGA 2101
||||||||||| |||||||||||||| | || ||||||||||||||||||||||| ||||
Sbjct 1851 TGAAGATGAATTAGGGCCTCAAGCTT-CCCCGTTATCTGAGGGAGCTTTAACTCCAATGA 1909
Query 2102 CAATCACTGAATCTCAGGCAACACCGGCAAGCCAAGCATCTTCTTCAGTGAAAGCAAGAA 2161
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1910 CAATTACTGAATCTCAGGCAACACCGGCAAGCCAAGCATCTTCTTCAGTCAAAGCAAGAA 1969
Query 2162 AGGGAAAATCCGAAAAGAGTGGTTCAAGCCAAAAGAGGAAAGTTAGCAAGAAAATAACAT 2221
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1970 AAGGAAAATCCGAAAAGAGTGGTTCGAGCCAAAAGAGGAAAGTTAGCAAGAAAATAACAT 2029
Query 2222 CAAGCCCGAAACAGGAAATTGGTACCGGTGAGGCTACAGAACAAGAGGAAGGGAAAGAAC 2281
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2030 CAAGCCCGAAACAGGAAATTGGTAGTGGTGAGGCTACAGAACAAGAAGAAGGGAAAGAAC 2089
Query 2282 AGAAAAGCGGGAGAAGAACTTCTTTCGGGTATGATCAAGAAGCAAGAGAAAGCAGCGGAG 2341
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 AGAAAAGCGTGAGAAGAAATTCTTTCGGGTATGATCAAGAAGCAAGAGAAAGCAGCGGAG 2149
Query 2342 GCAAGAACTCTCTTCCTCGGTTCATGCAGCCAACACAGTCAGCGAAAGCCAAGGTTCAAG 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GCAAGAACTCTCTTCCTCGGTTCATGCAGCCAACACAGTCAGCGAAAGCCAAGGTTCAAG 2209
Query 2402 AACATAACTCACCAAGATCAAGCCCTGATCTTCAAGAAAGAGATGTTGTTTCGGCTAAGA 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2210 AACATAACTCACCAAGATCAAGCCCTGATCTTCAAGAAAGAGATGTTGTTTCGGCCAAGA 2269
Query 2462 AGAGACATTCGTTGCCTGGTGTTACCAATGGGAAACAAGTTTCTCCTAGAATCCAACGGT 2521
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 AGAGACATTCTTTGCCTGGTGTTACCAATGGGAAACAAGTTTCTCCTAGAATCCAACGGT 2329
Query 2522 CTGCGTCTCAAGCACAACAGGGAACAAAGGATAGAAAATGGCAGAGGTGA 2571
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2330 CTGCGTCTCAAGCACAACAGGGAACAAAGGACAGAAAATGGCAGAGGTGA 2379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111604417850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5