BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19880.1
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920943 jgi|Araly1|920943|scaffold_102224.1 2649 0.0
> Ahg920943 jgi|Araly1|920943|scaffold_102224.1
Length=1652
Score = 2649 bits (1434), Expect = 0.0
Identities = 1583/1656 (96%), Gaps = 6/1656 (0%)
Strand=Plus/Plus
Query 234 TTTTTGGTCGGAGAAGTAATGGCGGAAGCGATGAATTCGTCGGAGAAGAAAGATGAGAGC 293
||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||
Sbjct 3 TTTTTGGTCGGAGAAGTTATGGCGGCAGCGATGAATTCGTCGGAGAAGAAGGATGAGAGC 62
Query 294 TCGGAGGAGAAGGGAGGTGAGCTTTTGTTCTGTGGTGCTACGGCTTGGGATATCATTGGA 353
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 63 TCGGAGGAGAAGGGAGGTGAGCTTTTGTTCTGTGGTGCTACAGCTTGGGATATCATTGGA 122
Query 354 AAACGAAAAGGTGCGATGGAAGGTAACTTGGTCTCTCCTACTCGGCTAAGGCCACTCGTC 413
||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 123 AAACGCAAAGGTGCCATGGAAGGTAACTTGGTCTCTCCTACTCGTTTAAGACCACTCGTC 182
Query 414 GGCGTTAACATTCGATTCGTCGCCACTGGTTGCGCTTCGTTTCATTGTGTGGCATTGGAC 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 183 GGCGTTAACATTCGATTCGTCGCCTCTGGTTGCGCTTCGTTTCATTGTGTGGCATTGGAC 242
Query 474 GTTGAAGGTCGTTGTTACACTTGGGGACGTAATGAGAAAGGTCAATTAGGTCATGGTGAT 533
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 243 GTTGAAGGTCGTTGTTACACCTGGGGACGCAATGAGAAAGGTCAATTAGGTCATGGAGAT 302
Query 534 ATGATTCAACGTGATAGGCCAACAGTTGTGTCAGGACTCTCTAAGCACAAAATTGTGAAA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATGATTCAACGTGATAGGCCAACAGTTGTGTCAGGACTCTCTAAGCACAAAATTGTGAAA 362
Query 594 GCGGCAGCAGGAAGGAACCACACGGTAGTGGTTAGTGATGATGGACAGTCTCTTGGTTTT 653
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 363 GCGGCAGCAGGGAGGAGCCACACGGTAGTGGTTAGTGATGATGGACAGTCTCTAGCTTTT 422
Query 654 GGCTGGAATAAGTATGGGCAGTTGGGTTTGGGTTCAGCCAAAAACGGTTTTGTTTCTGTA 713
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 423 GGCTGGAATAAGTATGGGCAGTTGGGTTCGGGTTCAGCCAAAAACGGGTTTGTTTCTGTA 482
Query 714 GAAGTTGAATCGACGCCTCTTCCCTGTGTTGTGTCTGATGAGGTCACAAACGTTGCCTGT 773
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAAGTTGAATCAACGCCTCTTCCCTGTGTTGTGTCTGATGAGGTCACAAACGTTGCCTGT 542
Query 774 GGGGCTGACTTCACAGTGTGGTTATCGTCTACTGAAGGAGCCTCTATACTGACTGCCGGT 833
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 543 GGGGCTGACTTTACAGTGTGGTTATCATCTACTGAAGGAGCCTCTATACTGACTGCCGGT 602
Query 834 CTCCCACAGTATGGTCAACTTGGTCATGGAACTGATAATGAGTTCAATATGAAGGATAGT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CTCCCACAGTATGGTCAACTTGGTCATGGAACTGATAATGAGTTCAATATGAAGGATAGT 662
Query 894 TCAGTTAGACTCGCCTACGAAGCTCAGCCACGTCCTAAAGCCATCGCCTCTCTTGCAGGG 953
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 663 TCAGTTAAACTCGCCTACGAAGCTCAGCCACGACCCAAAGCCATCGCCTCTCTTGCAGGG 722
Query 954 GAAACCATTGTCAAAGTTGCATGTGGAACAAATCATACTGTGGCCGTAGATAAGAATGGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GAAACCATTGTCAAAGTTGCATGTGGAACAAATCATACTGTGGCCGTAGATAAGAATGGA 782
Query 1014 TATGTTTACACGTGGGGATTTGGTGGATATGGAAGGCTTGGACATAGGGAGCAGAAAGAT 1073
| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 783 TTTGTTTACACGTGGGGCTATGGTGGATATGGAAGGCTTGGACATAGGGAGCAGAAGGAT 842
Query 1074 GAGTGGGCTCCACGCCGTATTGATGTGTTTCAGAGGAATAATGTTTTGCCTCCTAATGCC 1133
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 GAGTGGGCTCCTCGCCGTATTGATGTGTTTCAAAGGAATAATGTTTTGCCTCCTAATGCC 902
Query 1134 ATTCTTTCTGCTGGTTCTGCAAACTCCGCTTGTACAGCTGGTGGTGGACAGTTATATATG 1193
||| |||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 903 ATTGTTTCCGCTGGCTCTGCAAACTCCGCGTGTACCGCTGGTGGAGGACAATTATATATG 962
Query 1194 TGGGGAAAGATAAAGAACAATGGTGATGATTGGATGTACCCTAAACCGATGATGGATTTA 1253
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 963 TGGGGAAAGATAAAGAACAATGGTGATGATTGGATGTACCCTAAACCTATGATGGATTTA 1022
Query 1254 AGTGGTTGGAACTTGCGTTGGATGGATTCAGGAAGCATGCATCATTTTGTTGGTGCCGAC 1313
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1023 AGTGGTTGGAACTTGCGTTGGATGGATTCAGGAAGTATGCATCACTTTGTTGGTGCCGAT 1082
Query 1314 AGTTCTTGCATAAGTTGGGGTCATGCTCAGTATGGAGAACTTGGTTATGGCCCCAACGGT 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1083 AGTTCTTGCATAAGTTGGGGTCATGCTCAGTATGGAGAACTTGGTTATGGCCCCAATGGT 1142
Query 1374 CAAAAATCCTCTGCAGCACCTAAGAAGGTGGATATGCTCGAGGGAATGCATGTAATGGGT 1433
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1143 CAAAAATCCTCTGCTGCACCAAAAAAGGTGGATATGCTCGAGGGAATGCATGTAATGGGT 1202
Query 1434 GTGGCATGCGGTTTTTGCCATTCAATGGTCATTGTTGACAGAACAGATATCGCTGATAGG 1493
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1203 GTGGCATGCGGTTTTTGCCATTCAATGGTCATAGTCGACAGAACAGATATCGCTGATCGG 1262
Query 1494 CTTGAGCAGCTCGAGGTCTATGACGGGAAAGGATCATTAGAAGAGAGTGTAGAAGAAGTC 1553
||||||||||||||| | || || |||||||||||||||||||||||| |||||||||||
Sbjct 1263 CTTGAGCAGCTCGAGATTTACGATGGGAAAGGATCATTAGAAGAGAGTATAGAAGAAGTC 1322
Query 1554 AAGGAAGAAACTTTGGCACCAAAGCAACAAGCAGTTACCAAAAGAGGTGCTTCTAAAAAG 1613
||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||
Sbjct 1323 AAGGAAGAAACTTTGGCGCCAAAGCAACAAGC---TGCCAAAAGAGGTACTTCTAAAAAG 1379
Query 1614 AGGAAAGCATCAAAAGCTTCCTCTGATTCTGAACAAGACAGTGATGAAGATAACAGCGAC 1673
|||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGGAAAACATCAAAAGC-T--TCTGATTCTGAACAAGACAGTGATGAAGATAACAGCGAC 1436
Query 1674 AAGGAGAAGGAAGTTCAAGGTAGTGACGCAGACAGTGACTACAGTGAAGATGGAGAAGAG 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AAGGAGAAGGAAGTTCAAGGTAGTGACGCAGACAGTGACTACAGTGAAGATGGAGAAGAG 1496
Query 1734 GCCAATGGCAAGAAACAGAGTGCTCGTGGTAGAGGACGTGGTCGTGGAGCACGTGGACGC 1793
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1497 GCCAATGGCAAGAAACAGAGCGCTCGTGGCAGAGGACGTGGTCGTGGAGCACGTGGACGC 1556
Query 1794 GGCGGCCGCACCAGTAACGGAAAGGCTCCACCCGTGAAGACCGGTGGAAGAAGAGGAAGG 1853
|| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 1557 GGTGGCCGCACCAGTAACGGAAAGGCTCCGCCGGTAAAAACCGGTGGAAGAAGAGGAAGG 1616
Query 1854 CCACGTAAGTCTTAGAACTACTCTGACTCTAAACCT 1889
|||||||||||||| ||| |||||||||||||||||
Sbjct 1617 CCACGTAAGTCTTAAAACGACTCTGACTCTAAACCT 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79037258375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5