BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19890.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1 719 0.0
Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1 355 2e-97
Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1 342 2e-93
> Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1
Length=580
Score = 719 bits (389), Expect = 0.0
Identities = 547/616 (89%), Gaps = 40/616 (6%)
Strand=Plus/Plus
Query 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATCTACTGGTGGAAAAGGTCCAAGGAAGGAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATCTACTGGTGGAAAAGGTCCAAGGAAAGAA 60
Query 61 CTCGCTACCAAGGCGGCGAGGAAAAC---TAGACGACCGTACCGTGGTGGAGTCAAGAGG 117
|||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||
Sbjct 61 CTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGAGG 120
Query 118 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 180
Query 178 ACCGACTTGTTGATCCGCAAATTGCCTTTCCAACGACTTGTTCGTGAAATCGCCCAAGAT 237
||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 181 ACCGACTTGCTAATCCGTAAATTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCAAGAT 240
Query 238 TTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCGAA 297
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CATAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAGCCGAA 300
Query 298 GCATACTTGGTGGGGTTGTTCGAAGACACGAATTTGTGTGCGATTCACGCCAAAAGGGTT 357
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 301 GCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAAAGGGTT 360
Query 358 ACGATCATGTCCAAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTTGAATC 417
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCTTGAATC 420
Query 418 ATCATGATGGTTCTGTGAATTTGTATTTTATGTATTTTTAGTGTTTTCGTTTTGTTCTTT 477
||| ||||| || ||||||||||| ||| || ||| || | | | | ||
Sbjct 421 ATCTTGATGATTATGTGAATTTGT-TTTC--GT-TTT---GT-TCT-C-T---GT----- 462
Query 478 GATGGGTGAGATAGAATCGTGTATATAGGTTTCTGATTCCTACTCTGATAAAACCC-TTC 536
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 463 G--GGGTGAGATAGAATCATGTATATAGGTTTCTGATTCGTACTCTGATAAAACCCGTTG 520
Query 537 CGTGTGTTTATTTTCTTTCTTTGGTATTTATTAGGATCTCTTTGTGTCTTGTTTGTAAAA 596
|||||| | ||||||||||||| | || || |||||||||||||||||
Sbjct 521 -GTGTGTATCTTTTCTTTCTTTG-T------------CT-TT-GTGTCTTGTTTGTAAAA 564
Query 597 TAATCTGTTTCGTGAA 612
||||||||||||||||
Sbjct 565 TAATCTGTTTCGTGAA 580
> Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1
Length=533
Score = 355 bits (192), Expect = 2e-97
Identities = 350/424 (83%), Gaps = 20/424 (5%)
Strand=Plus/Plus
Query 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATCTAC-TGGTGGAAAAGGTCCAAGGAAGGA 59
||||| |||||||||||||| ||||| ||||| || || ||||||| ||| |||||| |
Sbjct 30 ATGGCTCGTACGAAGCAAACCGCGAGAAAATC-ACACGGAGGAAAAGCTCCGAGGAAGCA 88
Query 60 ACTCGCTACCAAGGCGGCGAGGAAAACTAGACGACCG--TACCGTGGTGGAGTCAAGAGG 117
|||||||||||||||||||||||| || | || ||| |||| || ||||||||||
Sbjct 89 GCTCGCTACCAAGGCGGCGAGGAAATCT-G-CG-CCGACTACC--GGAGGAGTCAAGAAA 143
Query 118 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 177
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 144 CCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGC 203
Query 178 ACCGACTTGTTGATCCGCAAA-TTGCC-TTTCCAACGACTTGTTCGTGAAATCGCCCAAG 235
|| || ||||||||||||||| || || |||| | || |||||||||||||| |||||||
Sbjct 204 ACAGAGTTGTTGATCCGCAAACTT-CCATTTC-AGCGTCTTGTTCGTGAAATAGCCCAAG 261
Query 236 ATTTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCG 295
|||| ||| |||| | || || || |||||||| ||| | || |||||||| || || |
Sbjct 262 ATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCTG 321
Query 296 AAGCATACTTGGTGGGGTTGTTCGAAGACACGAAT-TTGTGTGCGATTCACGCCAAA-AG 353
||||||| |||||||| ||||| |||||||| ||| || ||||| ||||| || ||| ||
Sbjct 322 AAGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTT-TGTGCCATTCATGC-AAAGAG 379
Query 354 GGTTACGATCATGTCC-AAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTT 412
||||||||| ||| || || || |||| ||||| ||| | |||||||| || |||||||
Sbjct 380 GGTTACGATAATG-CCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 438
Query 413 -GAA 415
|||
Sbjct 439 AGAA 442
> Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1
Length=501
Score = 342 bits (185), Expect = 2e-93
Identities = 344/419 (82%), Gaps = 17/419 (4%)
Strand=Plus/Plus
Query 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATCTAC-TGGTGGAAAAGGTCCAAGGAAGGA 59
||||| |||||||||||||| ||||| ||||| || || ||||||| |||||||||| |
Sbjct 15 ATGGCTCGTACGAAGCAAACCGCGAGAAAATC-ACACGGAGGAAAAGCTCCAAGGAAGCA 73
Query 60 ACTCGCTACCAAGGCGGCGAGGAAAACTAGACGACC--GTACCGTGGTGGAGTCAAGAGG 117
||| ||||| ||||| ||||||||| || | || || ||||| |||||||||||||
Sbjct 74 ACTTGCTACTAAGGCTGCGAGGAAATCT-G-CG-CCGAGTACC--GGTGGAGTCAAGAAA 128
Query 118 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 177
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 129 CCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGC 188
Query 178 ACCGACTTGTTGATCCGCAAA-TTGCC-TTTCCAACGACTTGTTCGTGAAATCGCCCAAG 235
|| || ||||| ||||| ||| || || |||| | || ||||||||||||||||||||||
Sbjct 189 ACAGAGTTGTTAATCCGTAAACTT-CCATTTC-AGCGTCTTGTTCGTGAAATCGCCCAAG 246
Query 236 ATTTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCG 295
|||| ||| |||| | || ||||| ||||| || ||| | || |||||||| || || |
Sbjct 247 ATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGCGG 306
Query 296 AAGCATACTTGGTGGGGTTGTTCGAAGACACGAATTTGTGTGCGATTCACGCCAAA-AGG 354
| ||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||| |||
Sbjct 307 AGGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGC-AAAGAGG 365
Query 355 GTTACGATCATGTCC-AAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTT 412
|||||||| ||| || || || |||| ||||| ||| | |||||||| || |||||||
Sbjct 366 GTTACGATAATG-CCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5