BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19900.1
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472215 jgi|Araly1|472215|fgenesh2_kg.1__2169__AT1G19900.1 2584 0.0
Ahg926948 jgi|Araly1|926948|scaffold_202509.1 523 2e-147
> Ahg472215 jgi|Araly1|472215|fgenesh2_kg.1__2169__AT1G19900.1
Length=1794
Score = 2584 bits (1399), Expect = 0.0
Identities = 1660/1785 (93%), Gaps = 22/1785 (1%)
Strand=Plus/Plus
Query 51 CaaaaaaaTGGCAGCACGAGCAACATTCATATTCTATGCTCTCTTCCTAACCACACTCCA 110
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 17 CAAAAAAATGGCAGCACGAGCCACATTCATATTCTATGCTCTCTTCCTAACCTCAATCCA 76
Query 111 ATTCCTTCTAACACACCATGTGTCATCCGCCGCCCGAGGATTATGGAAATACATCGCCCC 170
| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ACTCCTCCTAACATACCACGTGTCATCCGCCGCCCGAGGATTATGGAAATACATCGCCCC 136
Query 171 CAACGTCGGAATCTCCGCGATGCATATGCAACTTCTCCATAACGACCGTGTCGTAATGTA 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CAACGTCGGAATCTCGGCGATGCATATGCAACTTCTCCATAACGACCGTGTCGTAATGTA 196
Query 231 CGACCGAACCAACTTCGGACCATCAAACATCTCTCTACCTAACGGTAACTGCCGTGACAA 290
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 197 CGACCGAACCAACTTCGGACCATCGAACATCTCTCTACCTAACGGAAACTGCCGTGACAA 256
Query 291 CCCCCAA-GACGCCGTCTCCAAAATCGACTGCACAGCTCACTCGATCGAATACGACGTCG 349
|| || ||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 -TCCAAACGACATCGTTTCCAAGCGCGACTGCACAGCTCACTCGATCGAATACGACGTCG 315
Query 350 CAACGAACACCATCCGACCTTTAACGGTACAATCCAACACATGGTGCTCATCCGGTTCGG 409
||| ||||||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct 316 CAATGAACACCGTCAGGCCCCTAACGGTACAATCCAACACATGGTGCTCATCCGGTTCGG 375
Query 410 TTCGACCGGACGGTGTTCTTGTCCAAACCGGTGGAGACCGAGACGGAGAACTTAAGACAA 469
|| |||||||||||||||||||||||||||||||||||||||| || ||||| ||| | |
Sbjct 376 TTAGACCGGACGGTGTTCTTGTCCAAACCGGTGGAGACCGAGATGGGGAACTAAAGGCGA 435
Query 470 GAACCTTTTCTCCTTGTAATAACAATCAATGTGATTGGGTCGAAATGAACAACGGTTTAA 529
|||| || ||||||||| | |||||||||||||||||||| ||||| |||||||| ||||
Sbjct 436 GAACATTCTCTCCTTGTGACAACAATCAATGTGATTGGGTAGAAATTAACAACGGCTTAA 495
Query 530 AAAAGAGAAGATGGTACGCTTCCAACCATATTCTTCCCGACGGTAAACAAATCGTCATGG 589
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 496 CGAAGAGAAGATGGTATGCTTCCAACCATATTCTTCCCGACGGTAAACAAATCGTCATCG 555
Query 590 GAGGTCAAGGACAATTCAACTACGAGTTCTTTCCCAAAACGACAAACCCTAACGTAGTCG 649
||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 556 GAGGTCAAGCTCAATTCAATTACGAGTTCTTCCCCAAAACGACAAACCCTAACGTAGTCG 615
Query 650 CGTTACCGTTTTTGGCCGAGACTCATGATCAAGGACAAGAGAATAATCTTTATCCTTTTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CGTTACCGTTTTTGGCCGAGACTCATGATCAAGGACAAGAGAATAATCTTTATCCTTTTG 675
Query 710 TGTTTATGAATACCGATGGGAATCTATTTATGTTCGCTAATAACAGAGCGATATTACTCG 769
| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 676 TTTTTATGAATACCGATGGGAATTTATTTATATTCGCTAATAACAAAGCGATATTACTCG 735
Query 770 ACTATGTTAAGAACACGGTGGTGAAAACTTTTCCGGCGATTCCCGGTGGTGATCCGAGAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 ACTATGTTAAGAACACGGTGGTGAAAACTTTTCCGGCGATTCCCGGTGGTGATCCGAGAA 795
Query 830 ACTATCCGAGCACTGGCTCAGCCGTGTTATTACCGTTAAAGAATCTTGAAGCGGAT-AAT 888
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 796 ACTATCCGAGCACTGGCTCGGCCGTGTTATTACCGTTAAAGAATCTTGAAGCGGATCAAA 855
Query 889 GTCGAGACGGAGGTTCTAGTGTGTGGAGGTGCACCAAAAGGATCATACAACCTCGCT--- 945
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 856 -TCGAGACGGAGGTTCTGGTGTGTGGAGGTGCACCGAAAGGATCATACAACCTAGCTTTT 914
Query 946 AGAAAGAAAACTTTCGT-GAAAGCGCTTGACACGTGTGCAAGGATCAAGATTAACGATGC 1004
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGAAAGAAAACTTTCGTTGAA-GCGCTTGACACGTGTGCAAGGATCAAGATTAACGATGC 973
Query 1005 CAAACCTGAATGGGCGGTTGAGAAGATGCCACATGCTAGAGTTATGGGAGATATGATTCC 1064
|| ||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 974 GAATCCTCAATGGACGGTGGAGAATATGCCACATGCTAGAGTTATGGGAGATATGATTCT 1033
Query 1065 TTTGCCAAACGGAGATGTTTTGCTAATCAACGGTGGATCTTTTGGTACTGCTGCATGGGA 1124
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1034 TTTGCCAAACGGAGATGTTTTGATTATCAACGGTGGATCTTTTGGTACTGCTGCATGGGA 1093
Query 1125 GCTTGGTCGT-ACACCGGTTTTAGCACCAGACCTATACCATCCCGAGAATCCGGTTGGCT 1183
|||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||| ||
Sbjct 1094 GCTTGGTCGTGA-ACCGGTTTTGGCACCGGACCTATACCATCCTGAGAATCCGGTTAACT 1152
Query 1184 CTAGGTTTGAATCGCTAAGGCCGACTACAATCCCGAGAATGTATCACTCCGCGGCTATTC 1243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CAAGGTTTGAATCGCTAAGGCCGACTACAATCCCGAGAATGTATCACTCCGCGGCTATTC 1212
Query 1244 TTCTACGTGACGGTAGGGTTTTAGTCGGAGGAAGCAATCCTCATGCGTTTTATAACTACA 1303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1213 TTCTACGTGACGGTAGGGTTCTAGTCGGAGGAAGCAATCCTCATGCGTTTTATAACTTCA 1272
Query 1304 CCGGAGTGCTTTTCCCGACGGAGTTGAGCTTAGAAGCTTTCTCTCCGGTTTACCTACAAC 1363
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1273 CCGGAGTGCTTTTTCCGACGGAGCTGAGCTTAGAAGCTTTCTCTCCGGTTTATCTACAAC 1332
Query 1364 GGGAGTTTTCGAATCTTCGTCCCAAGATTATATCTCCTGAACCTCAGTCGATGATTAAAT 1423
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1333 GGGAGTTTTCGGATCTTCGTCCCAAGATTATATCTCCTAAACCTCAGTCGACGATTAAAT 1392
Query 1424 ATGGGACGAATTTGAAGTTGAAATTTTCGGTCACCGGAGAAGTTACGACTCCGGCGAAAG 1483
|||| | |||| |||||||||| ||| ||||||| ||||||||||||||||||| ||||
Sbjct 1393 ATGGAATGAATCTGAAGTTGAAGTTTACGGTCACGGGAGAAGTTACGACTCCGGTAAAAG 1452
Query 1484 TGAC-TATGGTATTTCCGACGTTCACGACGCATAGCTTCGCGATGAATCAGAGGGTTTTG 1542
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TGACGT-TGGTGTTTCCGACGTTCACGACGCATAGCTTCGCGATGAATCAGAGGGTTTTG 1511
Query 1543 GTTTTGGACAATGTTAAGTTTACGAGGAAAGGCAAATCGCCGATGTATGAGGTTCAAGTG 1602
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1512 GTTTTGGACAATGTTAAGCTTACCAGGAAAGGCAAATCGCCGACGTATGAGGTTCAAGTG 1571
Query 1603 AGGACTCCGAGGTCGGCGAATATTGCATGGCCTGGTTATTATATGATTTTTGTGGTGAAT 1662
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1572 AGGACTCCAAAGTCGGCGAATATTGCATGGCCTGGTTATTATATGATCTTTGTGGTGAAT 1631
Query 1663 CAAGACATACCAAGCGAAGGTGTTTGGGTAAAGTTAGAATGATTCATTGACT-TTTATTT 1721
||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1632 CAAAACATACCAAGTGAAGGTGTTTGGGTAAGGTTACAATGATTCATTGACTCTTTATTT 1691
Query 1722 AATATCTTTATTTTTGTGTGTAATTGTGTTATATT-AC----TG-ATATCAATTGTATAT 1775
|||||||||||||||||||| |||||||||||| | || |||||||||||||||
Sbjct 1692 TATATCTTTATTTTTGTGTGT--TTGTGTTATATTTATGGAATGGATATCAATTGTATAT 1749
Query 1776 GAATGTAATAAGAATATGTCTTCTCAACTTGATGATAATAAATTA 1820
|| ||| |||||||||| | ||||||| |||||||||||||||||
Sbjct 1750 GATTGTGATAAGAATATCTGTTCTCAATTTGATGATAATAAATTA 1794
> Ahg926948 jgi|Araly1|926948|scaffold_202509.1
Length=1688
Score = 523 bits (283), Expect = 2e-147
Identities = 1165/1575 (74%), Gaps = 123/1575 (8%)
Strand=Plus/Plus
Query 172 AACGTCGGAATCTCCGCGATGCA-TATGCAACTTCTCCATAACGACCGTGTCGTAATGTA 230
|||||||| ||||| || ||||| | | || || || || |||||||||||| |||||||
Sbjct 151 AACGTCGGGATCTCAGCAATGCACTCT-CAGCTCCTTCACAACGACCGTGTCATAATGTA 209
Query 231 CGACCGAACCAACTTCGGACCATCAAACATCTCTCTACCTAACGGTA-ACTGCCGTGA-C 288
|||||||||||||||||| || || ||||||||||| || ||||| | |||||| | |
Sbjct 210 CGACCGAACCAACTTCGGTCCTTCCAACATCTCTCTCCCCAACGG-AGCCTGCCG-CAGC 267
Query 289 AACCCCCAAGACGCCGTCTCCAAAATCGACTGCACAGCTCACTCGATCGAATACGACGTC 348
| ||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||||||
Sbjct 268 AGCCCGGGTGACGCAGTCTCGAATATCGACTGCACGGCTCACTCGGTCGAATACGACGTC 327
Query 349 GCAACGAACAC-CATCCGACCTTTAACGGTACAATCCAACACATGGTGCTCATCCGGTTC 407
|| |||| | ||||| || ||||| || ||||||||||| |||||||| || || |
Sbjct 328 GCTTTGAAC-CGTATCCGTCCCTTAACAGTCCAATCCAACACTTGGTGCTCCTCAGG--C 384
Query 408 GG-TTCGA--CCGGACGGTGTTCTTGTCCAAACCGGTGGAGACCGAGACGGAGAAC-TTA 463
|| || | || ||||| |||| ||||| || || || |||||||||||| | |
Sbjct 385 GGAGTC-ACTCCCGACGGAACTCTTCAACAAACGGGAGGTGATAGAGACGGAGAACGTAA 443
Query 464 AGACAAGAACCTTTT--CTCCTTGTAATAACAATCA-ATGTGATTGGGTC-GAAAT-GAA 518
|| || | ||||| ||||||| | ||||| | ||||| | || | ||| | | |
Sbjct 444 AG-TTAG-A-CTTTTCGCTCCTTGCGACGACAAT-ATTTGTGACT-GGACAGAAGTCG-A 497
Query 519 CAACGG-TTTAAAAAAGAGAAGATGGTACGCTTCCAACCATATTCTTCCCGACGGTAAAC 577
||||| | | ||||||||||||||| | |||||| | || ||||||||| |
Sbjct 498 TAACGGACTCGCTGCA-AGAAGATGGTACGCTACAAACCATGTCCTCCCCGACGGTCGGC 556
Query 578 AAATCGTCATGGGAGGTCAAGGACAATTCAACTACGAGTTCTTT-CCCAAAACGACAA-A 635
| ||| | || ||||||| ||| |||||||||| |||||| ||| |||||||| | ||
Sbjct 557 AGATCATAATCGGAGGTCGAGGTCAATTCAACTTCGAGTT-TTTCCCCAAAAC-A-AACG 613
Query 636 C-CCTAA-CGTAGT-CGCGTTACCGTTTTTGGCCGAGACTC-ATGATCAAGGACAAGAGA 691
| || || | | | | | |||||||||||| |||| || | | |||| ||| || |
Sbjct 614 CTCCAAATC-T-CTACTCTTTACCGTTTTTGTCCGAAAC-CAACGATC-CTGAC--GAAA 667
Query 692 ATAATCTTTATCCTTTTGTGTTT-ATGAATACCGATGGGAATC-TATTTATGTTCGCTAA 749
| |||||||| |||| || ||| | || |||||| |||| | | || || ||||||||
Sbjct 668 ACAATCTTTACCCTTACGT-TTTCCTAAACACCGAT-GGAAACTTGTTCATATTCGCTAA 725
Query 750 TAACAGAGCGATATTACTCGACTATGTTAAG-AACACGGTGGTGAAAACTTTTCCGGCGA 808
|||||||||||||| || || ||| | || ||||| || || ||||| | ||| | ||
Sbjct 726 CAACAGAGCGATATTGCTAGATTAT-TCCAGAAACACTGTCGTCAAAACGTATCCCGAGA 784
Query 809 TTCCC-GGTGGTGATCCGAGAAACTATCCGAGCACTGGCTCAGCCG-TGTTATTACCGTT 866
|||| || |||||||| |||| ||||||||||||||||| |||| | || || ||| |
Sbjct 785 -TCCCTGGAGGTGATCCAAGAAGTTATCCGAGCACTGGCTCCGCCGTTCTT-TTGCCGAT 842
Query 867 AAAGAATCTTGAAGCGGATAATGTCGAGACGGAGGTTCTAGTGTGTGGAGGTGCACCAAA 926
|||||| | | | ||| | | |||||||||||||||||||||||||||||
Sbjct 843 AAAGAA-C------C---T--TGT-GTTA--GAGGTTCTAGTGTGTGGAGGTGCACCAAA 887
Query 927 AGGATCATACAACCTCGCT-AGAA--AGAAA-ACTTTCGTGAAAGCGCTTGACACGTGTG 982
|||||| ||| ||||| || | || ||||| ||||| |||||||| |||||||| ||||
Sbjct 888 AGGATCGTACGACCTCTCTCA-AAGGAGAAATACTTTTGTGAAAGCTCTTGACACATGTG 946
Query 983 CAAGGATCAAGATTAACGATGCCAAACCTGAATGGG-CGGTTGAGAAGATGCC-ACATGC 1040
|||| ||||| || ||||| | || ||| ||||| || ||||||||||||| | | ||
Sbjct 947 CAAGAATCAATATCAACGACGTGAATCCTCAATGGATCG-TTGAGAAGATGCCGAGA-GC 1004
Query 1041 TAGAGTTATGGGAGATATGATTCCTT-TGCCAAACGGAGATGTTTTGCTAATCAACGGTG 1099
|||||||||||||| ||||| | || | || ||||| ||||| || |||| |||||||
Sbjct 1005 GAGAGTTATGGGAGACATGATGC-TTCTACCTGACGGAAATGTTCTGTTAATTAACGGTG 1063
Query 1100 GATCTTTT-GGTACTGCTGCATGGGAGCTTGGTCGT-ACACCGGTTTT-AGCACCAGACC 1156
| | || || || ||||| ||||||||||||||| | ||||||||| | || ||
Sbjct 1064 G-TGGTTCAGGGACAGCTGCTTGGGAGCTTGGTCGTGA-ACCGGTTTTTAAT-CCTGATA 1120
Query 1157 TATACCATCCCGAGAATCCGGTTGGCTCTAGGTTT-GAATCGCTAAGGCCGA-CTACAAT 1214
| ||||||||||| || ||||| || | || | || ||| | | || || | | | | |
Sbjct 1121 TTTACCATCCCGATAAACCGGTCGGTT-TAAGATTCGAAGCTCAAAACCCAAGCAAGA-T 1178
Query 1215 CCCGAGAATGTATCA--CT-CCGCGGCTATT-CTTCTACGTGACGGTAGGGTT-TTAGTC 1269
||| ||||||| || || ||||| || || |||| ||||||| || ||| || ||
Sbjct 1179 CCCTCGAATGTACCATTCTACCGCGACT-TTGCTTC---GTGACGGGAGAGTTCTT-GTT 1233
Query 1270 GGAGGAAGCAATCCTCATGCGTTTTATAACTACACCGGAGTGCTTTTCCCGACGGAGTTG 1329
||||||||||| ||||| |||||||| || | |||||| || ||||||||||||||| ||
Sbjct 1234 GGAGGAAGCAACCCTCACGCGTTTTACAATTTCACCGGCGTTCTTTTCCCGACGGAGCTG 1293
Query 1330 AGCTTAGAAGCTTTCTCTCCGGTT-TACCTACAACGGGAGTTTTCGAATCTTCGTCCCAA 1388
|| ||||| ||||| || ||| | || | | | ||| |||| | ||||||| |
Sbjct 1294 AGGTTAGAGGCTTTTTCGCCG-TCGTATTTGGATCCTAAGTACTCGAGTATTCGTCCGA- 1351
Query 1389 G-ATTATATCTCCT-GAACCTCAGTCGATGATTAAATATGGGACGAAT-TTGAAGTTGAA 1445
| ||| | |||| | | ||||| | ||| || || || | |||| |||| | |||
Sbjct 1352 GTATTGTGGATCCTAGGTCA-CAGTCAACGATCAACTACGGTA-GAATCTTGAGGCTGAG 1409
Query 1446 ATTTTCGGTCACCGGA-GAAGTTACGACTCCGGCGAAAGTGACTATGGTATTTCCGACGT 1504
| | | || |||||| || || | | ||||| |||||||| ||| | ||||| |||
Sbjct 1410 GTATACTGTAACCGGAAGA-GTGAAAAGTCCGGTTAAAGTGACGATGTTGTTTCCTTCGT 1468
Query 1505 TCACGACGCATAGCTT-CGCGATGAATCAGAGGGTTTTGGTT-TTGGA-CAATGTTAAGT 1561
| || || ||| ||| | ||||| |||| ||| |||||||| ||| | || ||| | |
Sbjct 1469 TTACTACACATT-CTTTCTCGATGCATCAAAGGCTTTTGGTTCTTG-ATCA-TGTCATTT 1525
Query 1562 -TTACGAGGAAA-GGCAAATCGCCG-ATGTATGAGGTTCA-AGTGAGGACTCCGAGGTCG 1617
|| || | || | | || | || ||||| ||| | ||| |||||||| || ||
Sbjct 1526 CTTTT-AG-ACTCGGGAT-TAGCAGGATTTATGAAGTT-AGAGTTAGGACTCCAAGCTCC 1581
Query 1618 GCGAATATTGCATGGCCTGGTTATTATATGATTTTTGTGGTGAATCAAGACATACCAAGC 1677
||| | ||||| ||| |||||||| ||| |||| || || || ||||| ||||| ||
Sbjct 1582 CCGATTCTTGCACCGCCCGGTTATTACATGGTTTTCGTTGTAAACCAAGATATACCTAGT 1641
Query 1678 GAAGGTGTTTGGGTA 1692
|||||| ||||||||
Sbjct 1642 GAAGGTCTTTGGGTA 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69209975165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5