BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19910.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1 1079 0.0
Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581 444 6e-124
Ahg476712 jgi|Araly1|476712|fgenesh2_kg.2__1842__AT1G75630.1 436 9e-122
> Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1
Length=709
Score = 1079 bits (584), Expect = 0.0
Identities = 685/728 (94%), Gaps = 29/728 (4%)
Strand=Plus/Plus
Query 89 ATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 148
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTCAAGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 60
Query 149 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 120
Query 209 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGTT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCGGTGGTT 180
Query 269 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATC 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATT 240
Query 329 AACCCTAAGGCCAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 388
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCCTAAGGCCAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 300
Query 389 GCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 448
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTGTGGTCTCGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 360
Query 449 GTTAGAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTT 508
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTAGAGCGAATGCACAACAACCCAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTT 420
Query 509 GCTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGT 568
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GCTGAGGCACTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGT 480
Query 569 CAGTCTAGAGCCGAGTGAAATCCAGAGTATCTCTCTCTCTTATCGGCTACAGTCCTTGTA 628
|||||||||||||||||||||||||| | ||||||||||| | || | |||
Sbjct 481 CAGTCTAGAGCCGAGTGAAATCCAGA-T-TCTCTCTCTCT---C--CT----T----GTA 525
Query 629 ATGTTTTGGTATATTTTACT-CT-GTTTT---CTTTTGTGGTAT-GT---TTTT-GAGTT 678
|||||||||||||||||||| | ||||| |||||||||||| || |||| |||||
Sbjct 526 ATGTTTTGGTATATTTTACTTCCAGTTTTTTTCTTTTGTGGTATTGTGAGTTTTTGAGTT 585
Query 679 TCTCATGAAAACAAGCAACATGGGTGAAATTTATTTGACTTTTGTTTCAAAACCCATTTC 738
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 586 TCTCATGAAAACAAGCAACATGGGTGAAAATTATTTGACTTTTGTTTCAAAACCG-TTTC 644
Query 739 TTTTCTTTTTCATTTGCACACTATATATGGATACATCAATAAGTAATAAAATATGACGAT 798
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 T---CTTTTTCATTTGCACACTATATATGGATACATCAATAAGTAATAAAATATGACGAT 701
Query 799 TCAATGAT 806
|||| |||
Sbjct 702 TCAACGAT 709
> Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581
Length=495
Score = 444 bits (240), Expect = 6e-124
Identities = 406/488 (83%), Gaps = 4/488 (1%)
Strand=Plus/Plus
Query 101 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTT 160
||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||| |||||
Sbjct 10 TTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCCGCACTCGTC 69
Query 161 TTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATG 220
||||||||||||||||| || || || || || ||||| || |||||||| || || |||
Sbjct 70 TTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATG 129
Query 221 GGTGTGATGAGACCAGAGCTT-GTGATGAAATCGATTGTTCCTGTTGTTATGGCTGGAGT 279
|| || ||||| || ||| || || |||||||| ||||| ||||||||||||||||| ||
Sbjct 130 GGAGTTATGAGGCCTGAG-TTGGTCATGAAATCTATTGTCCCTGTTGTTATGGCTGGTGT 188
Query 280 TTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATCAACCCTAAGGC 339
||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 189 TTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGC 248
Query 340 CAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCT 399
||||||||||| || || ||||| || || ||||| || || |||||||||||||||||
Sbjct 249 TAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCTTGTGGTCT 308
Query 400 CGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAA 459
|||||||| || || || ||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 309 TGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTCAGGGCAAA 368
Query 460 TGCACAACAACCTAAGTTGTTTGT-GGGAATGATTCTGATTCTCATCTTTGCTGAAGCAC 518
||| || || |||||| | ||||| |||| ||||||| || || |||||||| ||||| |
Sbjct 369 TGCTCAGCAGCCTAAGCTCTTTGTCGGGA-TGATTCTTATCCTTATCTTTGCAGAAGCGC 427
Query 519 TTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGAG 578
| || || ||||| || ||||| || |||||||| || || |||||||| ||||||||||
Sbjct 428 TCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCAGTCTAGAG 487
Query 579 CCGAGTGA 586
| || |||
Sbjct 488 CGGAATGA 495
> Ahg476712 jgi|Araly1|476712|fgenesh2_kg.2__1842__AT1G75630.1
Length=719
Score = 436 bits (236), Expect = 9e-122
Identities = 324/366 (89%), Gaps = 7/366 (2%)
Strand=Plus/Plus
Query 89 ATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 148
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 38 ATGGCTTCTGGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTCGGCGCCGCC 97
Query 149 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 208
|| || ||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 98 GCTGCACTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGCGTCGGA 157
Query 209 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGTT 268
|| ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 158 GTTGCGTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTGCCTGTTGTC 217
Query 269 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATC 328
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 218 ATGGCTGGTGTTTTAGGTATTTATGGTTTGATCATCGCTGTCATCATCAGTACTGGGATT 277
Query 329 AACCCTAAGGCCAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 388
||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 278 AACCCCAAGGCCAAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTA 337
Query 389 GCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 448
|||||||||||| | |||| || ||||||||||||||||| ||||| ||||| |||
Sbjct 338 GCTTGTGGTCTC--T---CTCT--GCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGT 390
Query 449 GTTAGA 454
||||||
Sbjct 391 GTTAGA 396
Score = 202 bits (109), Expect = 4e-51
Identities = 129/139 (93%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 450 TTAGAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTG 509
||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 453 TTAGAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTG 512
Query 510 CTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTC 569
| ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct 513 CGGAAGCGCTTGCACTATATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTC 572
Query 570 AGTCTAGAGCCGAGTGAAA 588
|||||||||| ||||||||
Sbjct 573 AGTCTAGAGCTGAGTGAAA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5