BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19930.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338371 jgi|Araly1|338371|fgenesh1_pg.C_scaffold_2000470 490 9e-138
Ahg315293 jgi|Araly1|315293|fgenesh1_pm.C_scaffold_2000326 464 5e-130
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 141 1e-32
> Ahg338371 jgi|Araly1|338371|fgenesh1_pg.C_scaffold_2000470
Length=1086
Score = 490 bits (265), Expect = 9e-138
Identities = 446/528 (84%), Gaps = 33/528 (6%)
Strand=Plus/Plus
Query 28 TTGATTTTTTCACTTCCA-AATGATTTGTTAGTGAACATCTTAGCCCGTGTCTCGAGGTT 86
|||| | ||||||||||| || |||||| |||||| |||||||||||||||||||| ||
Sbjct 58 TTGAATCTTTCACTTCCAGAA-GATTTGATAGTGAGTATCTTAGCCCGTGTCTCGAGATT 116
Query 87 GGATTATCCAATTCTCTCCTTAGTCTCCAAGCGTTTCAGCTCGGTCCTTACTTTACCGGA 146
| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 117 GTATTATCCAACTCTCTCCTTAGTCTCCAAGCGCTTCCGCTCGCTCCTTACTTCACCGGA 176
Query 147 GCTTTACCAGACCCGGTCACTAGTAGGTCTTACCGAGAATTGTCTTTATGTGTGCTTACT 206
||||||||| |||||||||||| |||||| || ||| |||| ||| ||||| |||||||
Sbjct 177 GCTTTACCAAACCCGGTCACTATTAGGTCGTAGCGATAATTTTCTCTATGTATGCTTAC- 235
Query 207 G-TCCTCTCGTGCTGACCGTATCCCTAGCTGGTTCAAGCTTTGTCGGAGACC---T---A 259
| | ||||||| ||||||| |||||| ||||||||| ||| ||||||||||| | |
Sbjct 236 GATTCTCTCGTACTGACCGAATCCCTCGCTGGTTCATGCTGTGTCGGAGACCAAATCAAA 295
Query 260 TCCTAGCCAGTGACACT-------------AG--GAAGTCAAGTGGGTATGTTTTGGCAA 304
||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 296 TCCTAACCAGTGACACTAAGAAGAAGAAGAAGAAGAAGTCAAGCGGGTATGTTTTGGCAA 355
Query 305 CAATACCAATTCCA-CATTCTCCTCCTTTGCACAGG-TCAAGTCTCGTGGCGGTTGGTTC 362
|||| |||||| || |||||||||||| |||| || ||| |||||||||||||||||||
Sbjct 356 CAATCCCAATT-CACCATTCTCCTCCTGCGCAC-GGTTCAGGTCTCGTGGCGGTTGGTTC 413
Query 363 TAATATCTATAACATTGGCGGATCCATCTCCCAATC-CCAGTCATCTAGTGTCT-CAATC 420
||||||||| |||||||| |||||||||| | | || || ||||| | || || |||||
Sbjct 414 TAATATCTACAACATTGGAGGATCCATCTACGATTCGCCC-TCATCAAATG-CTTCAATC 471
Query 421 CTAGACTGCTGGTCTCACACGTGGCTCGAAGGTCCAAGCATGCAGGTGGAGCGGGAGTAC 480
||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||||| |||
Sbjct 472 CTAGATTGCTGGTCTCACACATGGCTCAAAGCTCCAAGCATGCATGTGGAGCGGGATTAC 531
Query 481 CCATCAGCCAGTTTACTTGATGGAAAGATATACGTAACAGGAGGCTGT 528
|||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 532 CCATCAGCCAATTTCCTTGATGAAAAGATATACGTAACAGGAGGCTGT 579
> Ahg315293 jgi|Araly1|315293|fgenesh1_pm.C_scaffold_2000326
Length=1125
Score = 464 bits (251), Expect = 5e-130
Identities = 423/501 (84%), Gaps = 32/501 (6%)
Strand=Plus/Plus
Query 557 AAACTGATAACGTAGTGGTTGATGGAAAGCTACACAGTTGTGGTGGGTATAAGGGTGTGG 616
||||| | |||||||| ||||||||||| ||| || ||||| |||| |||||||||| |
Sbjct 635 AAACTAAGAACGTAGTTGTTGATGGAAATCTATAC-GTTGT--TGGGAATAAGGGTGTTG 691
Query 617 CTTACAACCCCAATGATGGTAGATGGGATAGTTTAGGATCAGAGATGAATTT-GGGTCTG 675
|||||||||||| |||| || |||||||||||||||| | ||||||||||| || || |
Sbjct 692 TTTACAACCCCAAGGATGATACATGGGATAGTTTAGGACCGGAGATGAATTTAGGTTC-G 750
Query 676 AAATGGTCTTCATCTTGTGTGATAGAGAACGTGATTTACTATTATTATCAC-AATGAAAA 734
||||||| ||| ||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 751 AAATGGTTTTCTTCTTGTGTGATAGAGAACGTGCTTTACTATTATTATTACGAA-GAAGG 809
Query 735 TATCAAATGGTATGACACTAAGGTAAGATCCTGGAGAACTTTG---AATGGTTTGA-AAA 790
||||||||||||||||||||||| |||||||||||||| |||| |||||| ||| |||
Sbjct 810 TATCAAATGGTATGACACTAAGGCAAGATCCTGGAGAAGTTTGTTAAATGGTATGAGAAA 869
Query 791 CACTACCTAGGTTTGCTCGTTATGCCAATGTTAGGTTGGCAGATTATGGTGGGAAAATGG 850
||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 870 -ACTGCCTAAGTTTGCTCGTCATGCCAATGTTAGGTTGGCGGATTATGGTGGGAAAATGG 928
Query 851 CACTTTTTTGGGACAAGTTTA---CT---GGT--TG-T-G-G-CAATCAGAATAGGATGA 898
|||||||||||||||||||| || ||| || | | | | || ||||||||||||
Sbjct 929 CACTTTTTTGGGACAAGTTTGTGGCTTCTGGTGGTGGTCGTGGCTATGAGAATAGGATGA 988
Query 899 TTTGGTGTGCGATTATTGCTCTTGAAAGACGCAATA-ATGAAGAGATTTGGGGGAATGTC 957
||||||||||||| ||||| ||||||||| | ||| | || |||||||||||||| ||
Sbjct 989 TTTGGTGTGCGATGATTGCACTTGAAAGAAGTTATAGAGGA-GAGATTTGGGGGAAGGTG 1047
Query 958 GAGTGGTCTGATGCAGTGCTTCCGCATC-AAGTTCCTATGGCCTATGTATGT-GAGTATG 1015
||||||| ||||||||||||||| ||| || |||||| || |||| || | |||||||
Sbjct 1048 GAGTGGTTTGATGCAGTGCTTCCAAATCCAA-TTCCTAAGGAATATG-ATTTTGAGTATG 1105
Query 1016 TTG-TTGCTGTCAACGTTTGA 1035
| | ||| |||||||||||||
Sbjct 1106 TCGGTTG-TGTCAACGTTTGA 1125
Score = 337 bits (182), Expect = 1e-91
Identities = 428/539 (79%), Gaps = 48/539 (9%)
Strand=Plus/Plus
Query 2 TGAAGAAGAATAAGGTGCCAACAG----AA--TTGATTTTTTCACTTCCA-AATGATTTG 54
||||||||||||| |||||| || || |||| | ||||||||||| || ||||||
Sbjct 26 TGAAGAAGAATAAACTGCCAATAGAACCAACCTTGAATCTTTCACTTCCAGAA-GATTTG 84
Query 55 TTAGTGAACATCTTAGCCCGTGTCTCGAGGTTGGATTATCCAATTCTCTCCTTAGTCTCC 114
|||||| ||||||||||||||||| || || ||||| || |||||||||||||| |
Sbjct 85 ATAGTGAGTATCTTAGCCCGTGTCTCAAGATTTTCTTATCGAAATCTCTCCTTAGTCTGC 144
Query 115 AAGCG-TTTCAGCTCGG-TCCTTACTTTACCGGAGCTTTACCAGACCCGGTCACTAGT-A 171
||||| || || || || ||||||||| | ||||||| ||| || |||||||||| | |
Sbjct 145 AAGCGCTTCCA-CT-GGCTCCTTACTTCAGGGGAGCTTCACCGGATCCGGTCACTA-TCA 201
Query 172 GGTCT-TACCGAGAATTGTCTTTATGTGTGCTTACTG-TCCTCTCGTGCTGACCGTATCC 229
||| | ||||||||||||||| ||||||||||||| | | ||||| | ||||| |||||
Sbjct 202 GGT-TGTACCGAGAATTGTCTCTATGTGTGCTTAC-GTTTCTCTCATAATGACCATATCC 259
Query 230 CTAGCTGGTTCAAGCTTTGTCGGAGACCTATCCTAGCCAGTGACACTAGGAAGTCAAGTG 289
|| ||||| || | ||| | || | || | | ||||||||||
Sbjct 260 CTCGCTGG---AA--------GAAGA---A--GAAG--A-AGA-A-T---AAGTCAAGTG 295
Query 290 GGTATGTTTTGGCAACAATACCAATTCCACATTCTCCTCCTTTGCACAGG-TCAAGTCTC 348
|||||||||||| |||||| ||| |||| ||| ||||||||| ||| || | |||||
Sbjct 296 GGTATGTTTTGGAAACAATCCCATTTCCCCATCCTCCTCCTTCCCAC-GGTTGGGGTCTC 354
Query 349 GTGGCGGTTGGTTCTAATATCTATAACATTGGCGGATCCATCTCCCAATCCCAG-TCATC 407
|||||||||||||||||||| || ||||||||||||||||||| | | | | |||
Sbjct 355 GTGGCGGTTGGTTCTAATATTTACAACATTGGCGGATCCATCTACGGTTGTC-GCTCAAA 413
Query 408 TAGTGTCTCAATCCTAGACTGCTGGTCTCACACGTGGCTCGAAGGTCCAAGCATGCAGGT 467
|||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 414 TAGTGTCTCAATCCTAGACTGCTGGTCTAACACGTGGCTCAAAGCTCCAAGCATGCAGGT 473
Query 468 GGAGCGGGAGT-ACCCATCAGCCAGTTTACTTGATGGAAAGATATACGTAACAGGAGGC 525
|| | || || ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 474 AGATC-GGTGTCGCCCATCAGCCAATTTCCTTGATGGAAAGATATACGTAACAGGAGGC 531
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 141 bits (76), Expect = 1e-32
Identities = 373/512 (73%), Gaps = 37/512 (7%)
Strand=Plus/Plus
Query 37 TCACTTCCAAATGATTTGTTAGTGAACATCT-TAGCCCGTGTCTCGAGGTTGGATTATCC 95
|||||||| |||||||| || || | | | | || || ||||| || ||| | |||||
Sbjct 77 TCACTTCCCGATGATTTGATATTG-AGTTGTGTGGCACGGGTCTCAAGATTGTACTATCC 135
Query 96 AATTCTCTCCT-TAGTCTCCAAGCG-TTTCAGCTCGGTCCTTACTTTACCGGAGCTTTAC 153
| ||||| || | ||||||||| | |||| | || |||| ||| |||||||||||||
Sbjct 136 GACTCTCT-CTCTCGTCTCCAAGAGCTTTC-GATCACTCCTGGCTTCACCGGAGCTTTAC 193
Query 154 CAGACCCGGTCACTAGTAGGTCTTACCGAGAATTGTCTTTATGTGTGCTTACTGTCCTCT 213
|| | | ||||| | || | || |||| |||||| ||||| |||||| || |
Sbjct 194 AAGGCTAGATCACTCTTGGGACGCACGGAGAGTTGTCTCTATGTTTGCTTAAGGTTGACA 253
Query 214 CGTGCTGACCGTATCCCTAGCTGGTTCAAGCTTTGTCGGAGACCT-AT-----CCTAGCC 267
| | | | | | ||||||||||| || || |||| |||| || |||| ||
Sbjct 254 CCT-TTTA--AAAGCAATAGCTGGTTCACCCTCTGCCGGAAACCTCATCAAACCCTAACC 310
Query 268 AGT--G-ACACTAGGAAGTCAAGTGGGTATGTTTTGGCAACAATACCAATTCCACATTCT 324
||| | | | | |||||||||||||||||||||||||||| | ||||| || ||||||
Sbjct 311 AGTAAGAAGAAAAAGAAGTCAAGTGGGTATGTTTTGGCAACAGTCCCAATCCCCCATTCT 370
Query 325 CCTCCTTTGCACAGGTCAAGTCTCGTGGCGGTTGGTTCTAATATCTATAACATTGGCGGA 384
|||| | |||| |||| |||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 371 CCTCGTGCGCACTTGTCAGGTCTCGTGGCTGTTGGTTCTGATATCTACAACATTGGCGGA 430
Query 385 TCCA------TCTCCCAATC-CCAG---TCATCTAGTGTCTCAATCCTAGACTGC-TGGT 433
| || ||| | || | || | || ||||| |||| || || || ||| || |
Sbjct 431 TGCAGAAAAATCTACGAAACGCC-GCCCTCCTCTAGCGTCTGGATTCTGGATTGCATG-T 488
Query 434 CTCACACGTGGCTCGAAGG-TCCAAGCATGCAGGTGGAGCGG--GAGTACCCATCAGCCA 490
||||||| |||| ||| || ||||||| ||| |||||||| ||| || || || |
Sbjct 489 CTCACACATGGCGCGA-GGCTCCAAGCTTGCCGGTGGAGCCAATGAG-ACTT-TCTGCTA 545
Query 491 GTTTACTTGATGGAAAGATATACGTAACAGGA 522
| | ||||||||||||||||| ||| |||||
Sbjct 546 GCGTCCTTGATGGAAAGATATATGTAGCAGGA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5