BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19940.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472218 jgi|Araly1|472218|fgenesh2_kg.1__2172__AT1G19940.1 2518 0.0
Ahg926953 jgi|Araly1|926953|scaffold_202514.1 979 0.0
> Ahg472218 jgi|Araly1|472218|fgenesh2_kg.1__2172__AT1G19940.1
Length=1602
Score = 2518 bits (1363), Expect = 0.0
Identities = 1511/1583 (95%), Gaps = 7/1583 (0%)
Strand=Plus/Plus
Query 110 ATGGTGGCGAAACCAAGGTCAAGATGTTGTTGTTGTAG-TGTGTTCATCGGCGTTATCAT 168
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 1 ATGGTGGCGAAACCAAGGTCAAGATGTTGTTGTTGTAGTTG-GTTCATCGGCATTATCGT 59
Query 169 CTTAATCGCTATAA-TCATCGCTGTCATTTTCACAATCAGACATAGATCAAACCACTCCG 227
||| ||||| ||| || | || |||||||||||| |||| |||||||||| ||||||||
Sbjct 60 GTTAGTCGCTGTAATTC-TGGCGGTCATTTTCACATTCAGGCATAGATCAAGCCACTCCG 118
Query 228 ATGATGA---TGGCTCCAATGTTAAAAACTACGCTAATGCTCTCAAGATCGCTATGCAAT 284
||||| | |||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 119 ATGATAATCCTGGCTCCATTGATAAAAATTACGCTAATGCTCTCAAGATCGCTATGCAAT 178
Query 285 TCTTCGATATCCAGAAATCTGGTAAGCTTGAAAACAACGAGATATCATGGAGAGGAGATT 344
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 179 TCTTCGATATCCAGAAATCTGGTAAGCTGGAGAACAACAAGATATCATGGAGAGGAGATT 238
Query 345 CAGGTCTTAAAGATGGAAGCGAAGCAAGTATCGATCTTTCGAAAGGTTTGTACGATGCTG 404
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 239 CAGGTCTTAAAGATGGAAGCGAAGCAAGTATCGACCTTTCGAAAGGTTTATACGATGCAG 298
Query 405 GAGATCACATGAAGTTTGGTTTCCCAATGGCTTTCACTGCTACAGTTCTCTCATGGTCCA 464
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 299 GAGACCACATGAAGTTTGGTTTCCCAATGGCTTTCACTGCCACAGTTCTCTCATGGTCTA 358
Query 465 TTCTTGAATACGGTGATCAAATGGCTTCTCTGAACTTACTGGATCATGCTAAAGACTCTC 524
||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 359 TTCTTGAGTACGGTGATCAAATGGCTTCTGTGAACCTATTGGATCATGCTAAAGACTCTC 418
Query 525 TCAAATGGACTACTGATTTTCTCATCAATGCTCATCCTTCTCCAAATGTCCTCTATATTC 584
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAATGGACTACTGATTTCCTCATCAATGCTCATCCTTCTCCAAATGTCCTCTATATTC 478
Query 585 AGGTGGGAGATCCAGTGACGGATCATAAATGTTGGGATAGACCAGAAACAATGACTAGAA 644
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 479 AGGTGGGAGATCCGGTGACGGATCATAAATGTTGGGATAGGCCAGAAACAATGACAAGGA 538
Query 645 AGAGAACTCTTACTAAGATTGATACAAAGACTCCAGGGACTGAGGTTGCTGCAGAGACAG 704
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 AGAGAACTCTTACTAAGATTGATACAGAGACTCCAGGGACTGAGGTTGCTGCAGAGACAG 598
Query 705 CAGCAGCTATGGCTGCAGCATCTTTAGTCTTTAAAGAAAGTGATACCAAGTATTCAAGCA 764
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 599 CAGCAGCTATGGCTGCAGCATCTTTAGTATTCAAAGAAAGTGATACCAAGTATTCAAGCA 658
Query 765 CGCTTTTGAAACATGCGAAGCAGTTGTTCGATTTTGCGGATAATAACAGAGGATCTTACA 824
||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 659 CGCTTCTGAAACATGCAAAGCAGTTGTTCGATTTTGCGGATAATAACAAAGGTTCTTACA 718
Query 825 GTGTTAATATACCTGAGGTTCAGTCTTATTATAACTCAACTGGTTATGGAGATGAGCTTC 884
||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 719 GTGCTAATATACCCGAGGTTCAGCCTTATTATAACTCAACTGGATATGGAGATGAGCTTC 778
Query 885 TTTGGGCAGCTTCATGGTTGTACCATGCAACAGAGGATCAAACATATCTTGACTTTGTGT 944
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 TTTGGGCAGCTTCATGGTTGTACCATGCAACAGAGGATAAAACATATCTTGACTTTGTGT 838
Query 945 CGGAAAATGGTGAAGAGTTTGGTAATTTTGGAAGTCCATCATGGTTTAGTTGGGACAACA 1004
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGAAAACGGTGAAGAGTTTGGTAATTTTGGAAGTCCATCATGGTTTAGTTGGGACAACA 898
Query 1005 AGCTTCCAGGAACACATATACTATTATCAAGATTAACCTTTTTCAAAAAAGGGTTATCAG 1064
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 AGCTTCCAGGAACACATATACTATTATCAAGATTAACCTTCTTCAAAAAAGGGTTATCAG 958
Query 1065 GAAGCAAAGGACTTCAAGGTTTTAAAGAAACAGCAGAAGCTGTCATGTGTGGGCTTATAC 1124
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAAGCCAAGGACTTCAAGGTTATAAAGAAACAGCAGAAGCTGTCATGTGTGGGCTTATAC 1018
Query 1125 CAAGCTCACCAACTGCTACATCTAGTAGAACCGATGGTGGTCTAATATGGGTAAGTGAAT 1184
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 CAAGCTCACCAACAGCTACATCTAGTAGAACTGATGGTGGTCTAATATGGGTAAGTGAAT 1078
Query 1185 GGAATGCCCTGCAACACCCTGTGTCCTCTGCATTTCTAGCTACACTCTACAGTGACTATA 1244
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 GGAATGCACTGCAACACCCTGTGTCCTCTGCATTTTTAGCTACACTCTACAGTGACTATA 1138
Query 1245 TGCTCACCTCTGGTGTTAAGGAACTATCTTGCAGTGACCAATCCTTTAAACCTTCAGATC 1304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGCTCACCTCTGGTATTAAGGAACTATCTTGCAGTGACCAATCCTTTAAACCTTCAGATC 1198
Query 1305 TCAGAAAATTCGCTAGATCTCAGGCTGATTACATGTTAGGGAAAAATCCGGAGAAAATGA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAGAAAATTCGCTAGATCTCAGGCTGATTACATGTTAGGGAAAAATCCGGAGAAAATGA 1258
Query 1365 GCTATTTGGTGGGATATGGTGAGAAATATCCAGAATTTGTGCATCATAGAGGAGCTTCAA 1424
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTTATTTGGTGGGATATGGTGAAAAATATCCAGAATTTGTGCATCATAGAGGAGCTTCAA 1318
Query 1425 TACCAGCTGATGCAACCACAGGATGCAAAGATGGGTTTAAGTGGCTTAACTCGGATGAAC 1484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 TACCAGCTGATGCAAACACAGGATGCAAAGATGGGTTTAAGTGGCTTAACTCGGAGGAAC 1378
Query 1485 CAAATCCGAATGTAGCTTATGGAGCACTTGTTGGTGGACCGTTTTTGAATGACACGTTTA 1544
|||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CAAACCCGAACGTAGCTTATGGTGCACTTGTTGGTGGACCGTTTTTGAACGACACGTTTA 1438
Query 1545 TAGACGCAAGGAACAATTCTATGCAAAATGAGCCAAGCACTTATAACAGTGCTCTTGTTG 1604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 TAGACGCAAGGAACAATTCTATGCAAAATGAGCCAAGCACTTATAACAGTGCTCTTGTCG 1498
Query 1605 TTGGTCTTTTGTCGAGTTTGGTTACTACTTCTTCCTCGGTAGAATCTTTTTAAATGAGAT 1664
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1499 TTGGTCTTTTGTCGAGTTTGGTTACTACGTCTTCCTCATTAGAATCTTTTTAAATGAGAT 1558
Query 1665 TTTTATTAATTAGAATCACACAC 1687
|||||||||||||||||||||||
Sbjct 1559 TTTTATTAATTAGAATCACACAC 1581
> Ahg926953 jgi|Araly1|926953|scaffold_202514.1
Length=1621
Score = 979 bits (530), Expect = 0.0
Identities = 1150/1441 (80%), Gaps = 76/1441 (5%)
Strand=Plus/Plus
Query 236 GGCTCCAATGTTAA-AAACTACGCTAATGCTCTCAAGATCGCTATGCAATTCTTCGATAT 294
||| ||| || ||| ||| ||||| | ||||||||| ||||| |||| |||||||||||
Sbjct 174 GGCGCCATTGATAAGAAA-TACGCCGACGCTCTCAAGCTCGCTTTGCAGTTCTTCGATAT 232
Query 295 CCAGAAATCTGGTAAGCTT-GAAAACAACGAGATATCATGGAGAGGAGATTCAGGTCTTA 353
||||||||||||||| || || ||||| ||||||| ||||||||||||||||||||||
Sbjct 233 CCAGAAATCTGGTAA-ATTGGAGAACAATAAGATATCTTGGAGAGGAGATTCAGGTCTTA 291
Query 354 AAGATGGAAGCGAAGC-AAGTATCGATCTTTCGAAAGGTTTGTACGATGCTGGAGATCAC 412
|||||||||| ||||| || | | |||||||| || ||||| || ||||||||||||||
Sbjct 292 AAGATGGAAGTGAAGCCAA-TCTTGATCTTTCCAAGGGTTTATATGATGCTGGAGATCAT 350
Query 413 ATGAAGTTTGGTTTCCCAATGGCTTTCACTGCTACAGTTCTCTCATGGTCCATTCTTGAA 472
|| ||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||
Sbjct 351 ATTAAGTTTGGTTTTCCAATGGCTTTCACTGCTACTGTTTTGTCATGGTCGATTCTTGAG 410
Query 473 TACGGTGATCAAATGGCT-TCTCTGAACTTACTGGATCATGCTAAAGACTCTCTCAAATG 531
|| |||||||||||| | | ||||| | |||||| |||||||||||| ||| ||
Sbjct 411 TATGGTGATCAAATGAATGTAG-TGAACCAATTGGATCCTGCTAAAGACTCGCTCCGGTG 469
Query 532 GACTACTGATTTTCTCATCAATGCTCATCCTTCTCCA-AATGTCCTCTATATTCAGGTGG 590
||| ||||| | ||| ||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 470 GACCACTGACTATCTTATCAAAGCTCATCCTTCTG-ATAATGTCCTCTATATTCAGGTGG 528
Query 591 GAGATCC-A--GTGACGGATCATAAATGTTGGGATAGACCAGAA-ACAATGACTAGA-AA 645
||||||| | || | | ||||| ||||||||| |||||||| | | ||| ||| ||
Sbjct 529 GAGATCCGAAAGT-A-G-ATCATCCATGTTGGGAGAGACCAGAGGATA-TGAA-AGAGAA 583
Query 646 GAGAACTCTTACTAAGATTGATACAAAGACTCCAGGGACTGAGGTTGCTGCAGAGACAGC 705
|||| | || ||||| |||||| || | ||||||||||| ||||||||||| || || ||
Sbjct 584 GAGACCACTCACTAAAATTGATGCAGATACTCCAGGGACAGAGGTTGCTGCGGAAACTGC 643
Query 706 AGCAGCTATGGCTGCAGCATCTTTAGTCTTTAAAGAAAGTGATAC-CAAGTATTCAAGC- 763
|||||||||||| |||||||||| || ||||| || |||||| | ||| |||||| ||
Sbjct 644 TGCAGCTATGGCTTCAGCATCTTTGGTGTTTAAGGATAGTGATCCTCAA-TATTCA-GCC 701
Query 764 ACGCTTTTGAAACATGCGAAGCAGTTGTTCGATTTTGCGGATAATAACAGAGGATCTTAC 823
|||||| |||| ||||||||||||||||| |||||||| || | ||| ||||| ||||||
Sbjct 702 ACGCTTCTGAAGCATGCGAAGCAGTTGTTTGATTTTGCTGACACTAAGAGAGGCTCTTAC 761
Query 824 AGTGTTAATATACCTGAGGTTCAGTC-TTATTATAACTCAACTGGTTATGGAGATGAGCT 882
||||| || ||||||||||||||| || ||| || ||||| || || || ||||||||
Sbjct 762 AGTGTCAACATACCTGAGGTTCAGAAGTT-TTACAATTCAACGGGATACGGGGATGAGCT 820
Query 883 TCTTTGGGCAGCTTCATGGTTGTACCATGCAACAGAGGATCAAA-CATATCTTGACTT-T 940
|| ||||||||| |||||||| |||||||| ||||| |||| | || ||||| || |
Sbjct 821 ACTATGGGCAGCTAGTTGGTTGTATCATGCAACGGAGGA-CAAAACTTACCTTGA-TTAT 878
Query 941 GTGTCGGAAA-ATGGTGAAGAGTTTGGTAATTTTGGAAGTCCATCATGGTTTAGTTGGGA 999
||||| || |||| |||| |||| || |||||||| |||| | ||||||||||||||
Sbjct 879 GTGTCT-AATCATGGAAAAGAATTTGCTAGTTTTGGAAATCCAACTTGGTTTAGTTGGGA 937
Query 1000 CAACAAGCTTCCAGGAACACATATACTATTATCAAGATTAAC-CTT-TTTCAAAAAAGGG 1057
|||||||||| |||||||||| ||||||||||||||||| | ||| ||| |||||||
Sbjct 938 CAACAAGCTTGCAGGAACACAGGTACTATTATCAAGATTA-CTCTTCTTT-AAAAAAGAT 995
Query 1058 TTATCAGGAAGCAAAGGACTTC-AAGGTTTTAAAG-AA-ACAGC-AGAAGCTGTCATGTG 1113
|||||||||||||| |||||| || || | || || ||||| | |||||||||||||
Sbjct 996 TTATCAGGAAGCAAGGGACTTGGAAA-TT--ACAGGAACACAGCTA-AAGCTGTCATGTG 1051
Query 1114 TGGGCTTATACCAA-GCTCACCAACTGCTACATCTAGTAGAACCGATGGTGGTCTAATAT 1172
||| ||| |||||| | || ||||| |||||| |||||||||| | |||||||| ||||
Sbjct 1052 TGGACTTCTACCAAAG-TCTCCAACAGCTACAGCTAGTAGAACAAACGGTGGTCTTATAT 1110
Query 1173 GGGTAAGTGAATGGAA-TGCCCTGCAACAC-CCTGTGTCCTCTGCATTTCT-AGC-TACA 1228
|||| ||||||||||| | | ||||||| || || ||||| || || || ||| | |
Sbjct 1111 GGGTTAGTGAATGGAACT-CGATGCAACAATCC-GTTTCCTCAGCGTT-CTTAGCCT-CG 1166
Query 1229 CTCTACAGTGACTATATGCTCACCTCTGGTGTTAAGGAACTATCTTGC-A-GTGACCAAT 1286
|| | |||||| || |||||||| || || | | || |||| ||| | | || |||
Sbjct 1167 CTTTTCAGTGATTACATGCTCACTTCCCGTATCCATAAAATATCATGCGACGGGAA-AAT 1225
Query 1287 CCTTT-AAACCTTCAGATCTCAGAAAATTCGCTAGATCTCAGGCTGATTACATGTTAGGG 1345
||| ||| | |||||||||| | ||||| | ||| ||||||||||||||| | |||
Sbjct 1226 --TTTCAAAGCAACAGATCTCAGGGATTTCGCCAAATCGCAGGCTGATTACATGCTGGGG 1283
Query 1346 AAAAATCCG--GAGAAAATGAGCTATT-TGGTGGGATATGGTGAGAAATATCCAGAATTT 1402
|| |||||| | ||| | |||| | ||||||| ||||| || ||||| ||| |||||
Sbjct 1284 AAGAATCCGCTGGGAACA--AGCT-TCGTGGTGGGTTATGGAGACAAATACCCACAATTT 1340
Query 1403 GTGCATCATAGAGGAGCTTCAATACCAGCTGATGCAACCACAGGATGCAAAGATGGGTTT 1462
|||||||||||||||||||| || || || ||||||||||| || ||| |||||| ||
Sbjct 1341 GTGCATCATAGAGGAGCTTCGATTCCGGCAGATGCAACCACGGGTTGCTTAGATGGATTC 1400
Query 1463 AAGTGGCTTAACTCGGATGAA-CCAAATCCGAATGTAGCTTATGGAGCACTTGTTGGTGG 1521
|| ||| ||||||| | ||| ||||| || || |||| ||||| ||||| ||||||||
Sbjct 1401 AAATGGTTTAACTCA-ACGAAACCAAACCCAAACATAGCATATGGTGCACTCGTTGGTGG 1459
Query 1522 ACCGTTT-TTGAATGACACGTTTA-TAGACGCAAG-GAACAATTCTATGCAAAATGAGCC 1578
|| ||| || || || ||||||| | ||| || | || || | ||||| || |||||
Sbjct 1460 GCC-TTTCTTCAACGAGACGTTTACT-GACTCACGAGAG-AACCCGATGCAGAACGAGCC 1516
Query 1579 AAGCACTTATAACAGTGCTCTTGTTGTTGGTCTTTTGTCGAGT-TTGGTTACTACTTCTT 1637
|| |||||| |||| ||| || | |||||||| ||||| ||| ||| | ||||| ||||
Sbjct 1517 AACCACTTACAACAATGCACTCCTCGTTGGTCTCTTGTCTAGTCTTG-TCACTACCTCTT 1575
Query 1638 C 1638
|
Sbjct 1576 C 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5