BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19950.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312922 jgi|Araly1|312922|fgenesh1_pm.C_scaffold_1001702 1365 0.0
> Ahg312922 jgi|Araly1|312922|fgenesh1_pm.C_scaffold_1001702
Length=930
Score = 1365 bits (739), Expect = 0.0
Identities = 883/949 (93%), Gaps = 24/949 (3%)
Strand=Plus/Plus
Query 209 ATGATTGGATCGTTTCTAACAAGAGGACTAGTAATGGTATTTGGATATGCGTATCCTGCT 268
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGATTGGATCGTTTCTAACAAGAGGACTTGTAATGGTATTTGGATATGCGTATCCTGCG 60
Query 269 TATGAATGTTACAAAGCGGTTGAAAAGAATAAGCCTGAGATGCAACAGCTTCGATTCTGG 328
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGAATGCTACAAAGCTGTTGAAAAGAATAAGCCTGAGATGCAACAGCTTCGATTCTGG 120
Query 329 TGCCAATACTGGATTTTGGTGGCTGCTTTGACAATTTTCGAAAGAGTTGGCGATGCTCTT 388
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 121 TGCCAATACTGGATTTTGGTGGCTGCTTTGACGATTTTCGAAAGAGTTGGCGATGCTTTT 180
Query 389 GCTTCATGGGTTCCACTATACTGTGAGGCAAAACTGGCATTTTTCATATATCTTTGGTTC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTCATGGGTTCCACTATACTGTGAGGCAAAACTGGCATTTTTCATATATCTTTGGTTC 240
Query 449 CCCAAGACCAGAGGAACTACATACGTGTACGATTCATTCTTTCAG-CCATATGTTGCAAA 507
||||||||||||||||||||||| ||||||||||| || ||| || ||||||||||||||
Sbjct 241 CCCAAGACCAGAGGAACTACATATGTGTACGATTC-TTTTTTTAGACCATATGTTGCAAA 299
Query 508 GCATGAAAATGAAATCGACCGCAGCTTGATTGAGCTAAGGACCAAAGCTGGGGATCTGGC 567
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 300 GCATGAAAATGAAATCGACCGCAACTTGATTGAGCTAAGGACCAAAGCTGGAGATATGGC 359
Query 568 AGT-GATATACTGCAGAAAAGCAGTGAGCTATGGACAAACAAGAATCGTAGAGATCCTGC 626
||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 360 AGTCG-TATACTGCAGAAAAGCAGTTAGCTATGGACAAACAAGAATCGCAGAGATCCTGC 418
Query 627 ATTTTGTAGCTCTCCAGTCAACACCAAAACCTAAGCCTAAGGAAAAGAAGCAGGCAGCAG 686
|||||||||||||||||||||||||||||||| |||| |||| ||||||||| | ||||
Sbjct 419 ATTTTGTAGCTCTCCAGTCAACACCAAAACCTCAGCCGAAGGTAAAGAAGCA-G--GCAG 475
Query 687 CACCAGAAGAGGAAGAACAGAAACAACCGGATCTTAAGGCGACGAGCCAAGCAGCTTCTT 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CACCAGAAGAGGAGGAACAGAAACAACCGGATCTTAAGGCGACGAGCCAAGCAGCTTCTT 535
Query 747 CTAATCCTCAAGTGCGTCTGCAATCGAAGAAACCACAGCTTGTAACCAAAGAACCTATAT 806
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTAATCCTCAAGCACGTATGCAATCGAAGAAACCACAGCTTGTAACCAAAGAACCTATAT 595
Query 807 CACCAAAGCCTCTTTCATCCCCACGTAAGCAACAACAACTACAAACAGAGACCAAGGAAG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 CACCAAAGCCTCTTTCATCCCCACGTAAGCAACAACAACTACAAACAGAGACCAAAGAAG 655
Query 867 CAAAAGCAAGCGTGTCACAAACCAAACTCACTACTCTAACTccaccaggaccaccaccac 926
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 656 CAAAAGCAAGCGTGTCACAAACCAGACTCACTACTCTCTCTCCACCAGTACCACCACCAC 715
Query 927 caccaccaccaccgccaccaTCGCCCACAACCGCCGCGAAACGAAACGCTGATCCAGCAC 986
||||| |||| | | || | ||| | | |||| |||||||||||||||||
Sbjct 716 CACCATCACC-CT-CAAC-A--GCC-AT----G-----AAACCAAACGCTGATCCAGCAC 760
Query 987 AGCCATCACCAACAGAGGCAGAAG-AAGCGTCACAGACTGTCGCAGCTTTACCAGAACCA 1045
|||||| ||||||||||||||| | |||||||||||||||| ||||| |||||| | ||
Sbjct 761 AGCCATTACCAACAGAGGCAGA-GCAAGCGTCACAGACTGTTGCAGCGTTACCACCAGCA 819
Query 1046 GCGTCTGAGATTCAGCGAGCGTCATCGTCGAAAGAGACTATAATGGAGGAAACACTAAGG 1105
||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||
Sbjct 820 GCGTCTGAGATTCAGCGAGCGACATCTTCGAAAGAGACTTTAATGGAGGAAACACTTAGG 879
Query 1106 ATCACTCGTGGGAGTCTGAGAAAAGCTCGTTCTGCGGGAGCACCGCGCT 1154
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GTCACTCGTGGGAGTCTGAGAAAAGCTCGTTCTGCGGGAGCACCGCGCT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5