BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19960.1

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1         520    4e-147


> Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1
Length=386

 Score =  520 bits (281),  Expect = 4e-147
 Identities = 328/350 (94%), Gaps = 5/350 (1%)
 Strand=Plus/Plus

Query  1    GTATGAGCGCTCTTCACTCTTAGCAACCACGAGCACAAGAAAATATGAGCGACCCTAGCG  60
            |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    GTATGAGCACTCTTCACTCTTAGCAACCACGAGCACAAGAAAACATGAGCGACCCTAGCG  60

Query  61   GCCAATCTTCAACAACGACTGTCGGTGGAATTGCCGGCGGTAGCGGTTGTAACGGAGGAG  120
            ||||||||||||||||||||||||||||||  | |||||| |||||| ||||||| ||||
Sbjct  61   GCCAATCTTCAACAACGACTGTCGGTGGAAACGGCGGCGGCAGCGGTAGTAACGGGGGAG  120

Query  121  GTGGTGGAAGTGGCAGTGGAAGCGGCGGCTCCTTTGGGAATCAGCCGAGGAGATCAAAGG  180
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  121  GTGGTGGAAGTGGCGGTGGAAGCGGTGGCTCCTTTGGGAATCAGCCGAGGAGATCAAAGG  180

Query  181  TGAGGAAGCAAGTGTGGGCTGGAGTACTCGGCATCTCATCCGACTCCACCAACAATTAAT  240
            ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct  181  TGAGGAAGCAAGTGTGGGCTGGAGTTCTCGGCATCTCCTCCAACTCCACCAACAATTAAT  240

Query  241  AGTTTCT--T-CTTTCTTTCTCTTTTCACCTAAGAAATCATGTGTAGTGAAAAATGGTGG  297
            ||||| |  | |||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct  241  AGTTTTTAATTCTTTCTTTCTCTTTTCACCTAAAAAAT-ATGTCTAGTGAAAAATGGTGG  299

Query  298  TGGTAATTACTATGCTTGATCATCGTTTCATGTTAACTGTGTCTAAATAA  347
            |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  300  TGGTAATTACTATGCTTGATCATCATT-CATGTTAACTGTGTCTAAATAA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15300391189


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5