BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19968.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472221 jgi|Araly1|472221|fgenesh2_kg.1__2175__AT1G19968.1 841 0.0
> Ahg472221 jgi|Araly1|472221|fgenesh2_kg.1__2175__AT1G19968.1
Length=622
Score = 841 bits (455), Expect = 0.0
Identities = 579/635 (91%), Gaps = 23/635 (4%)
Strand=Plus/Plus
Query 2 AACAAAACACATGCAAGACAGGCTATAAGAGACTTTATAATATACACCAAACTATGCAAA 61
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AACAAAACACATGCAAGCCAGGCTATAAGAGACTTTATAATACACACCAAACTATGCAAA 60
Query 62 AACCATTTCAGAGAGCTCATCCTAACACACACTCGCACTCCTTCACCATTCATATAAACG 121
||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||
Sbjct 61 AACCATTTCAGAGAGCTCATCCT-A-ACACA----CACTCCTTCACTATTCATATAAACG 114
Query 122 AACCATTTAATCATCATCGTTACTTGGACCATCATCATAATCACAAT------ACCTTCA 175
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 AACCATTAAATCATCATCGTTACTTGGACCATCATCATAATCACAATAACAAGACCTTCA 174
Query 176 TAGGTTTATCTTCATCAATGAAGCTCTTCTCCAAATTCCGCAAAATTTTCATGAAGATCA 235
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 175 TAGGTTTATCTTCATCCATGAAGCTCTTCTCCAAATTCCGCAAGATTTTCATGAGGATCA 234
Query 236 TCTTCGCGCTTCCTTCTTCCTCCTCCGCAACCGTACGTCCTCACAAAACCGCTGACTTCG 295
||||| | ||| | ||||||||||||| ||||| |||||||||||||| ||||||| ||
Sbjct 235 TCTTCAC-CTT--TCCTTCCTCCTCCGCCACCGTGCGTCCTCACAAAACAGCTGACTCCG 291
Query 296 GCAATGGTTGTGATAGGCTAGAGACGCCGAAGATATCGTGCAGTAATTCATACTACTCCT 355
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 292 GCAATGGTTGTGAGAGGCTAGAGACGCCAAAGATATCGTGCAGTAATTCGTACTACTCCT 351
Query 356 CACAATCTCACTACAGTGAAGCTATCTCAGATTGTATAGACTTTTTCAATAAGTCTCAAC 415
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CACACTCTCACTACAGTGAAGCTATCTCAGATTGTATAGACTTTTTCAATAAGTCTCAAC 411
Query 416 AAGAAAGTGAAGACCGGATTGCTCATGATCACGACCGTTTTTACGTTTAGTCAAACTTCA 475
||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 412 AAGAAAGTGAAGACCGGATTGTTCATGATCATGACGGTTTTTACGTTTAGTCAAACTTCA 471
Query 476 AAGAAA-AATAATGATCTCATGTCTTTTCTTCTTCTAGATAACTCAAAATTTTCTTCTCT 534
|| ||| || || || | | | ||||||||||||| |||||||||| |||||||||||
Sbjct 472 AAAAAACAAAAAA-ATGTTTTTTTTTTTCTTCTTCTAAATAACTCAAA-TTTTCTTCTCT 529
Query 535 TAAGCTCAAACTCTTAT-TAATCTGTATTCACAGTCTCTGCATGTTTCCCTGAAAGTAAA 593
||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||
Sbjct 530 TAAGCTCAAACTCTTATCTA-TCCGTATTCACAGTCTCTGCATGTTTCCCTGAAAGTTAA 588
Query 594 TCTCGAGTTCAAATAACC--AAAATGGACCTCACA 626
| |||||||||| ||||| |||| ||||||||||
Sbjct 589 TTTCGAGTTCAA-TAACCCCAAAACGGACCTCACA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5