BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19970.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312925 jgi|Araly1|312925|fgenesh1_pm.C_scaffold_1001705 1303 0.0
> Ahg312925 jgi|Araly1|312925|fgenesh1_pm.C_scaffold_1001705
Length=846
Score = 1303 bits (705), Expect = 0.0
Identities = 814/864 (94%), Gaps = 18/864 (2%)
Strand=Plus/Plus
Query 93 ATGAAGGCGGAGAAGAATCCGATTCAGTCCGTAATGGCGTGGATTCGCCGGCAACCGCCA 152
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAGGCGGAGAAGAGTCCGATTCAGTCCGTGATGGCGTGGATTCGCCGGCAACCGCCA 60
Query 153 AAAGTAAAGGCTTTTCTTGGCGTGGTAACGGCAATGACGGTGCTTGTTCTCCTCAGGGTG 212
|| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AAGGTAAAGGCTTTTCTTGGTGTGGTAACGGCAATGACGGTGCTTGTTTTCCTCAGGGTA 120
Query 213 ATTGTTCATGAACACGACAATCTTTTCGTCGCTTCTGAGGCTGTACATGCCGTTGGTATC 272
|||||||||||||||||||| |||||| | || ||||||||||| |||||| |||| |||
Sbjct 121 ATTGTTCATGAACACGACAACCTTTTCATTGCCTCTGAGGCTGTTCATGCCTTTGGAATC 180
Query 273 GCTGTTCTTATCTATAAGCTCACAAAGGAGAAGACTTGTGCTGGGATATCTCTCAAGACA 332
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCTGTTCTTATCTACAAGCTCACAAAGGAGAAGACTTGCGCTGGGATATCTCTCAAGACA 240
Query 333 CAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGGAGTTT 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGGAGTTT 300
Query 393 GATCTTCATACATTTCTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCGTTTATATG 452
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GATCTTCATACATTACTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCATTTATATG 360
Query 453 ATCCGTTTCAAGCTTAGACCTACTTATATGGAAGATAAAGACAATTTTGCTATCTATTTC 512
|| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 361 ATTCGTTTCAAGCTTAGGCCTACTTATATGGAAGACAAAGACAATTTTGCTATCTACTTC 420
Query 513 GTCGTAATCCCATGTGCTGTTCTGTCTTTCTTCATTCATCCATCAACACGTCACCACATC 572
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GTCGTAATCCCATGTGCTGTTCTGTCTTTCTTCATTCATCCATCAACACGACACCACATC 480
Query 573 ATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTCTTCCTCAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTCTTCCTCAA 540
Query 633 TTAAGAGTCATGCAGAACACTAAGATTGTGGAACCATTCACTGCACATTACGTATTTGCT 692
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 541 TTAAGAGTCATGCAGAACACTAAGATCGTGGAACCATTCACAGCTCATTACGTATTTGCT 600
Query 693 TTGGGAATTGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTGGATACGCGA 752
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGGGAATCGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTGGATACGCGA 660
Query 753 GGGCGGTTACTGACTGCATTAGGGTCTGGACTGTGGCCTGTAATGGTCCTCATCTCTGAA 812
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGCGGTTACTGACTGCATTAGGTTCTGGACTGTGGCCTGTAATGGTCCTCATCTCTGAA 720
Query 813 ATAGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGTTCAGAGTTTAATGGGT 872
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGTTCAGAG---------- 770
Query 873 GGACAGCTCGTTCTTCGACTCCCGTCTGGTGTGGTGTAAAAAGCTCTGCGAAAATGGAGT 932
| |||||||||| ||||||||||||||||||||| ||||| || |||||||||||
Sbjct 771 ---C---TCGTTCTTCGTCTCCCGTCTGGTGTGGTGTAAGAAGCTTTGTGAAAATGGAGT 824
Query 933 GCTTGAGCTTGTGGAGAGGTTTAA 956
|||||||||||||||| | |||||
Sbjct 825 GCTTGAGCTTGTGGAG-G-TTTAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5