BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19980.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312926 jgi|Araly1|312926|fgenesh1_pm.C_scaffold_1001706 1528 0.0
> Ahg312926 jgi|Araly1|312926|fgenesh1_pm.C_scaffold_1001706
Length=1971
Score = 1528 bits (827), Expect = 0.0
Identities = 947/1005 (94%), Gaps = 7/1005 (1%)
Strand=Plus/Plus
Query 147 ATGGTTGTGAAATCGGTTTCTGGAGATTCGTCGGAACGGGAAAACTGGGAAACGATTTTC 206
|||| |||||||| ||| ||||||||||| |||||||| ||||||||| |||| ||||||
Sbjct 1 ATGGGTGTGAAATTGGTGTCTGGAGATTCTTCGGAACGAGAAAACTGGCAAACAATTTTC 60
Query 207 AAGAGTTTGGTCAAGATTTTACAGACGAAACAGGACCAGCTTGAGTCGCTTCTCAAAGAC 266
|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 AAGAGTTTGGTCAAGATTCTACAGACGAAACAGGATCAGCTCGAGTCGCTTCTCAAAGAC 120
Query 267 AAGAAGATTCTTGAAAGTGAGATCAAGACTAATAACGAAAATTGGCTCTCTGATGTTCGA 326
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AGGAAGATTCTTGAAAGTGAGATCAAGACTAAGCACGAAAATTGGCTCTCTGATGTTCGA 180
Query 327 AATTACGAGGATCAACTCTCTCTGATGATGAAAGAAATTGAAACGACTAAGATGTTTCAG 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 AATTACGAGGATCAACTCTCTCTGATGATGAAAGAAATTGAAACGACTAAGATGATTCAG 240
Query 387 TTACTGGAGACCTATAAAAGCAATCTCTTGTGTGGCTTAAAGGAGAAAGATCGTTCTCTT 446
|| || ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TTGCTTGAGACCTCCAAATGCAATCTCTTGTGTGGCTTAAAGGAGAAAGATCATTCTCTT 300
Query 447 TGCAATTTGAAACTAGAGCATTCGCTGGATGAGTTAAAAGACTTCAAGGCTTGGTTTGAT 506
|||||||||||| |||| ||| || |||| ||||||| |||||||||||||||||||||
Sbjct 301 TGCAATTTGAAATTAGAACATGCGGTGGACGAGTTAAGTGACTTCAAGGCTTGGTTTGAT 360
Query 507 TTCCTCACTCTGAATACAAATGTGGAGAGTGTAAGTGGCAATTCAGAAGGTACGGCTATT 566
||||||||||||||||||||| |||||| || ||||||||| ||||||| | ||||||||
Sbjct 361 TTCCTCACTCTGAATACAAATATGGAGAATGAAAGTGGCAACTCAGAAGCTTCGGCTATT 420
Query 567 AAGTCATTGGAAGCAAAAATCAGAAAACTGAAACTTGAGTATGAGAAGCTTGCTTCTGAA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGTCATTGGAAGCAAAAATCAGAAAACTGAAACTTGAGTATGAGAAGCTTGCTTCTGAA 480
Query 627 AAGAAATGTGAGGTATCTGATCTTTTACGAGAAAACGGGTTTGCGTGGAATCAGTTCAAA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGAAATGTGAGGTATCTGATCTTTTACGAGAAAACGGGTTTGCGTGGAATCAGTTCAAA 540
Query 687 TGTATCGAGAGTGAATTCACTGATAAGTTAAAGAGGAAAGATGATGAGATCGTTCAAGCG 746
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TGTATCGAGAGTGGATTCACTGATAAGTTAAAGAGGAAAGATGATGAGATCGCTCAAGCG 600
Query 747 AATACGAAAATTTCCAGTCTTATATCTTATCAAGAGCAGCTTCAGTCATCTAATCAAGAG 806
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATACGAAAATCTCAAGTCTTATATCTTATCAAGAGCAGCTTCAGTCATCTAATCAAGAG 660
Query 807 AAGGATGAGACTATCTCAAGGTTAAAGGCTAAGATGGCTGAAATGGAGACCAATTCTACT 866
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AAGGATGAGACTATCTCAAGGTTAAAGGCTAAGATGGCTGAAATGGAGGTGAATTCTACT 720
Query 867 AAGAAAGATGAGGAAATCTCAAAACTCACAAGGGATCTAGAGTCTGCAAAGAAGTCTCGT 926
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 AAGAAAGATGAGGAAATCTCAAAACTCACACGGGATCTAGAGTCTGCAAAGAAGTCTCGT 780
Query 927 GGG-TTCACACCGGTTTTAACTCGATGCACCAAACTTGAAAAGCGTAGCAATGGAAATAC 985
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 GGGCTT-ACACCGGTTTTAACTCGATGCACCAAACTTGAAACGCGTAGCAATGGAAATAC 839
Query 986 GGTGGGATCTCATATATCTACTAAGAAAGACAAG-TCTGCTGCATCAACAACAAATGAAA 1044
||||||||||||||||| |||||||||||| ||| | |||||||||||||||||| ||||
Sbjct 840 GGTGGGATCTCATATATTTACTAAGAAAGAGAAGGT-TGCTGCATCAACAACAAACGAAA 898
Query 1045 AGGTAAGCAAAAGCTCAAAGAGGAAAAGAGCGAAGAACATGACACCGGTCTCGGTTTCAG 1104
|||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||
Sbjct 899 AGGTAAGCAAAAGCTCAAAGAGGAAAAGAGTGAA---CATGACACCGGCCTCAGTTTCAG 955
Query 1105 AAGTCCCAAAGCTCTTCACTTCGACTTTTAGGCTTCCCAAGTTGA 1149
||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 956 AAGTCCCAAAGCTGTTCACTTCAACTTTTAGACTTCCCAAGTTGA 1000
Score = 202 bits (109), Expect = 7e-51
Identities = 148/166 (89%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 1370 AAGCTTAACCAAAGAAGAAAACAGCAATGGCGGAACATCTGCCAATGCAACAAAGATTTC 1429
||| || ||||||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 994 AAG-TTGACCAAAGAAGAAAGCAGCAATGGCGGAACATCTGGCAATTCAACAAAGATTTC 1052
Query 1430 AAGCGGCTTTGAAG-A-AG--AttttttttCCGGTTTTATTTTGTTTATAGCTGAGAATT 1485
|||||||||||||| | || |||||||| || |||||||||||| || |||||||||
Sbjct 1053 AAGCGGCTTTGAAGTAGAGTTTTTTTTTTTTTGG-TTTATTTTGTTTGTAACTGAGAATT 1111
Query 1486 CCCTCTTGTATGGATTTGATATTTTGAATAAGATCATTTGCTTCTT 1531
||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1112 TCCTTTTGTATGGCTTTGATATTTTGAATAAGATCATTTGCTTCTT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5