BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20000.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472225 jgi|Araly1|472225|fgenesh2_kg.1__2179__AT1G20000.1         527    4e-149


> Ahg472225 jgi|Araly1|472225|fgenesh2_kg.1__2179__AT1G20000.1
Length=426

 Score =  527 bits (285),  Expect = 4e-149
 Identities = 315/330 (95%), Gaps = 0/330 (0%)
 Strand=Plus/Plus

Query  286  GCCAACAAGATGCAGAAGATTTTATCACAATTTACAGAGGAACAAATGAGCAGATATGAA  345
            ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  97   GCCAACAAGATGCAGACCATTTTATCACAATTTACAGAGGATCAAATGAGCAGATATGAA  156

Query  346  TCTTTCAGAAGATCTGGTTTTAAGAAATCAGACATGGAGAAGTTGGTACAGAGAATCACA  405
            |||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct  157  TCTTTCAGGAGATCTGCTTTTAAAAAATCAGACATGGAGAAGTTAGTACAGAGAATCACA  216

Query  406  GGGGGTCCGAAGATGGACGACACTATGAACATCGTTGTGCGTGGTATCGCAAAGATGTTT  465
            |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  217  GGGGGTCCGAAGATCGACGACACTATGAATATCGTTGTGCGTGGTATCACAAAGATGTTT  276

Query  466  GTTGGCGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAGGAATCAGGACCT  525
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  277  GTTGGTGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAAGAATCAGGACCT  336

Query  526  ATTAGACCTTGCCATATCAGAGAGTCATATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT  585
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  337  ATTAGACCTTGCCATATCAGAGAGTCCTATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT  396

Query  586  CAAAGATCAGTTCAACGGCTTTTTCGCTAG  615
            || |||||||||||||||||||| ||||||
Sbjct  397  CAGAGATCAGTTCAACGGCTTTTCCGCTAG  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5