BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20000.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg472225 jgi|Araly1|472225|fgenesh2_kg.1__2179__AT1G20000.1 527 4e-149 > Ahg472225 jgi|Araly1|472225|fgenesh2_kg.1__2179__AT1G20000.1 Length=426 Score = 527 bits (285), Expect = 4e-149 Identities = 315/330 (95%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 286 GCCAACAAGATGCAGAAGATTTTATCACAATTTACAGAGGAACAAATGAGCAGATATGAA 345 |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 97 GCCAACAAGATGCAGACCATTTTATCACAATTTACAGAGGATCAAATGAGCAGATATGAA 156 Query 346 TCTTTCAGAAGATCTGGTTTTAAGAAATCAGACATGGAGAAGTTGGTACAGAGAATCACA 405 |||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||||| Sbjct 157 TCTTTCAGGAGATCTGCTTTTAAAAAATCAGACATGGAGAAGTTAGTACAGAGAATCACA 216 Query 406 GGGGGTCCGAAGATGGACGACACTATGAACATCGTTGTGCGTGGTATCGCAAAGATGTTT 465 |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 217 GGGGGTCCGAAGATCGACGACACTATGAATATCGTTGTGCGTGGTATCACAAAGATGTTT 276 Query 466 GTTGGCGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAGGAATCAGGACCT 525 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 277 GTTGGTGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAAGAATCAGGACCT 336 Query 526 ATTAGACCTTGCCATATCAGAGAGTCATATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT 585 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 337 ATTAGACCTTGCCATATCAGAGAGTCCTATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT 396 Query 586 CAAAGATCAGTTCAACGGCTTTTTCGCTAG 615 || |||||||||||||||||||| |||||| Sbjct 397 CAGAGATCAGTTCAACGGCTTTTCCGCTAG 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5