BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20015.1

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920957 jgi|Araly1|920957|scaffold_102238.1                        165    4e-41


> Ahg920957 jgi|Araly1|920957|scaffold_102238.1
Length=565

 Score =  165 bits (89),  Expect = 4e-41
 Identities = 89/89 (100%), Gaps = 0/89 (0%)
 Strand=Plus/Minus

Query  1    TCAAGTGATGAGATTTGATCTAAAATTCTCACGACGGTCGTCTGAGGCCTTTTGTGGCCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  526  TCAAGTGATGAGATTTGATCTAAAATTCTCACGACGGTCGTCTGAGGCCTTTTGTGGCCG  467

Query  61   ATTGATGTACCGATCACTCCTCTCTGATG  89
            |||||||||||||||||||||||||||||
Sbjct  466  ATTGATGTACCGATCACTCCTCTCTGATG  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2560802511


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5