BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20050.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472231 jgi|Araly1|472231|fgenesh2_kg.1__2185__AT1G20050.1 1229 0.0
> Ahg472231 jgi|Araly1|472231|fgenesh2_kg.1__2185__AT1G20050.1
Length=909
Score = 1229 bits (665), Expect = 0.0
Identities = 833/911 (91%), Gaps = 24/911 (3%)
Strand=Plus/Plus
Query 10 GGATCGAGGAGATTAGTAGTAAGCACATCATCATCACTCAGATCTAGT----AGTTCCAC 65
||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 GGATCGAAGAGATTAGTAGTAAGCACATCATCAGCACTCAGATCTAGTAGAGAGTTCCAC 60
Query 66 AAACTCACATTGGGTCGTTGACCAGAAAAACACACAGAGAAAGGAGAAAAA-CATGGAGG 124
|| | |||||||| | |||||||| |||||||| ||||| | || ||||| ||||||||
Sbjct 61 TAATTAACATTGGGCCATTGACCAG-AAAACACAGAGAGAGA-GAAAAAAACCATGGAGG 118
Query 125 AGTTGGCGCATCCGTACGTTCCGAGAGATCTGAACCTACCCGGATACGTACCAATCTCAA 184
| |||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 119 AATTGGCGCATCCGTACGTTCCGAGAGATCTGAAACTGCCGGGATACGTACCAATCTCCA 178
Query 185 TGTCAATGTCCTCCATCGTCTCTATCTACCTCGGTTCTTCCCTCCTTGTTGTCTCCCTCG 244
|||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 179 TGTCCATGTCCTCCATTGTCACTATCTACCTCGGTTCTTCCCTCCTTGTTGTCTTCCTCG 238
Query 245 TCTGGCTTCTCTTCGGGAGGAAGAAAGCTAAACTTGATAAGTTGCTTATGTGTTGGTGGA 304
|||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||
Sbjct 239 TCTGGCTTCTCTTCGGGAGGAAGAAATCTAAAGTTGAGAAATTGCTTATGTGTTGGTGGG 298
Query 305 CATTCACTGGTCTCACTCATGTTATTCTCGAGGGCTATTTCGTTTTCTCCCCTGAGTTTT 364
||||||||||||||||||| | || ||||| ||||||||||||||||| ||||||||||
Sbjct 299 CATTCACTGGTCTCACTCACATCATCCTCGAAGGCTATTTCGTTTTCTCTCCTGAGTTTT 358
Query 365 TCAAGGACAACACTTC-TGCTTATCTTGCTGAAGTTTGGAAAGAATATAGCAAAGGTGAT 423
|||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||
Sbjct 359 TCAAGGACAACACTTCTTG-TTATCTCGCTGAAGTCTGGAAAGAATATAGCAAAGGTGAT 417
Query 424 TCGAGATACGTAGGTAGAGATTCTGCAGTTGTATCTGTTGAAGGGATCACTGCTGTTATC 483
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 TCGAGATACGCAGGTAGAGATTCTGCAGTTGTGTCTGTTGAAGGGATCACTGCTGTTATC 477
Query 484 GTTGGCCCAGCTTCTCTCCTAGCTATTTATGCCATTGCTAAGGAGAAGTCGTATAGCTAC 543
|| ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GTAGGCCCTGCTTGTCTCCTAGCTATATATGCCATTGCTAAGGAGAAGTCGTATAGCTAC 537
Query 544 GTGCTTCAGCTTGCGATTTCGGTTTGCCAGCTCTACGGATGTTTGGTTTATTTCATTACT 603
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 GTGCTTCAGCTTGTGATTTCGGTTGGCCAGCTCTACGGATGTTTGGTTTATTTCATTACT 597
Query 604 GCTATCTTGGAAGGAGACAACTTTGCCACAAACTCTTTCTACTATTACTCCTACTACATC 663
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 598 GCTATCTTGGAAGGAGACAACTTTGCTACAAACTCTTTCTACTATTACTCCTACTACCTC 657
Query 664 GGGGCTAACT-GTTGGTGGGTCTTGATACCTTCACTCATTTCTTTCCGTTGCTGGAAAAA 722
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGGGCTAA-TGGATGGTGGGTCTTGATACCTTCACTCATTTCTTTCCGTTGCTGGAAAAA 716
Query 723 GATTTGTGCAGCTGCTGCCATTGCCAACAACAACGTCGAGACAAAGACGAAGAAGAAAAC 782
||||||||||||||| | ||||||||||| |||| |||||||||||||||||
Sbjct 717 GATTTGTGCAGCTGC----A-----AACAACAACGTTGAGATTAAGACGAAGAAGAAAAC 767
Query 783 CCGTTGAACCAAGGATCAAAGACTCTTTTATCTCTTCAGGTTACTGCTGTTATAGCAAAT 842
|||||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||| |
Sbjct 768 CCGTTGAAGCAAGGATCAAAGAATCTTTTATCTCTTCAGGTCACTGCTATTATAGCAA-T 826
Query 843 GAACATGAGTCTCCTTTTGCGGATAATTTATCCATTTTAAAAACTTT-AGCTATGTTGTC 901
|||||| ||| |||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 827 GAACATTTGTCACCTTTTGCGGATGATTTATCCATTTTAAAAACTTTGA-CTATGTTGTC 885
Query 902 TGTCTCTCTTA 912
||||||| |||
Sbjct 886 TGTCTCT-TTA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5