BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20065.2

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472233 jgi|Araly1|472233|fgenesh2_kg.1__2187__AT1G20065.2         276    8e-74


> Ahg472233 jgi|Araly1|472233|fgenesh2_kg.1__2187__AT1G20065.2
Length=195

 Score =  276 bits (149),  Expect = 8e-74
 Identities = 180/195 (92%), Gaps = 2/195 (1%)
 Strand=Plus/Plus

Query  74   ATGGAGAAATCTCGTGAAAGT-GATATCTTGTTCTGTAATTTGTGTGGGACAATGCTGGT  132
            |||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGGAGAAATCTCGGGAAAGTGGGT-TCTTGTTCTGTAATTTGTGTGGGACGATGCTGGT  59

Query  133  CTTGAAATCAACCAAGTATGCAGAATGTCCACTATGCGAAACAACGCGAAATGGCAAAGA  192
            |||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||
Sbjct  60   CTTGAAATCAACCAAGTATGTAGAATGTCCACTCTGCGAAACAACGAGAAATGCCAAAGA  119

Query  193  AATCATTGACAAGAATTTAGCTTACACAGTTACTACTGAGGTATGTGTTTTCCTTTACTC  252
            |||||||||||||||| || | ||||||||| || |||||||||||||||||||||| ||
Sbjct  120  AATCATTGACAAGAATATATCATACACAGTTTCTGCTGAGGTATGTGTTTTCCTTTATTC  179

Query  253  AGCATTGTGGATTCT  267
            |||||||||||||||
Sbjct  180  AGCATTGTGGATTCT  194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12400566425


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5