BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20070.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920964 jgi|Araly1|920964|scaffold_102245.1 747 0.0
> Ahg920964 jgi|Araly1|920964|scaffold_102245.1
Length=622
Score = 747 bits (404), Expect = 0.0
Identities = 542/607 (89%), Gaps = 16/607 (3%)
Strand=Plus/Plus
Query 290 TTATAATCAATGGAAACAATAGCAGTTCAAAATGCACCGGGTAAACAAGTTTCGGGTTTG 349
|||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 13 TTAT-ATCAATGGAAACAATAGCAGTTCAACGTCCACCGGGTAAACAGGTTTCGGGTTTG 71
Query 350 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 131
Query 410 AGTTTGGCTCTTCCTCTTAATCCAACGTCGTCTTGGGGATCTTCTCCGGCATATCCGCCG 469
|||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||
Sbjct 132 AGTTTGGCTCTTCCGAATAATCCAAAGTCGTCTTGGGGGTCGTCTCCGGCATATCCGCCG 191
Query 470 CCGC-ATAGTTACTCTCAGCCTCCTCTTCTCCCTCTACCACGTGTCAACAGCTCAACTGT 528
|||| | || |||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 192 CCGCCA-AGATACTCTCAGCCTCCTCTTCTCCCTCTGCCACGCGTCAACAGCTCAACTCT 250
Query 529 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGTGTCAACAACAACTCTTCTCTCAATCG 588
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 251 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGAGTCAACAACAACTCTTCTCTCAATTG 310
Query 589 CGTTGCTCAGAC-AAAAGCTATTTCTGAAACACACATGAAGAAAGCAGAGTTCATCGAAT 647
||| |||||||| |||| ||| |||||||||||| | |||| |||| ||| | ||||
Sbjct 311 CGTCGCTCAGACGAAAATAAATT-CTGAAACACACA--A-GAAATCAGACTTCGTTGAAT 366
Query 648 CTG--C-GAGACTGACTCGAACCGGTTCAGTGCCGATCCAGG-CGAACCA-GTTGCGTGA 702
| | | || |||||||||||| |||||||| ||| || || | ||| | || || |||
Sbjct 367 CGGTTCCGATACTGACTCGAACTGGTTCAGTTCCGGCCC-GGTCTAACAACGT-GCATGA 424
Query 703 TTTTCCTGAAGGATTCGATGGCTACCCCGGTCCAGCGATCATGTTATTATCTCCGCCACC 762
||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 425 TTTTCCTAAAGGATTTGATGGTTACCCAGGTCCAGCGATCATGTTATTATCTCCACCGCC 484
Query 763 GAGTAGTTTGCCCATGCCTAGGTTTTCGATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 822
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 GAGTAGTTTGCCCATGCCTAGGTTTTCTATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 544
Query 823 TGCTGGGAAAAGTGACGTAGCTACCAATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 882
| ||| |||| |||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 545 TAATGGCAAAAATGACGTTCCCGCCGATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 604
Query 883 -GGTGGT 888
||||||
Sbjct 605 AGGTGGT 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5