BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20090.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472235 jgi|Araly1|472235|fgenesh2_kg.1__2189__AT1G20090.1 1240 0.0
Ahg926972 jgi|Araly1|926972|scaffold_202533.1 795 0.0
> Ahg472235 jgi|Araly1|472235|fgenesh2_kg.1__2189__AT1G20090.1
Length=1088
Score = 1240 bits (671), Expect = 0.0
Identities = 856/938 (91%), Gaps = 41/938 (4%)
Strand=Plus/Plus
Query 271 TTTTTTGTTTGTTTCCGATCTTGCGGCAGAGAT--G-GCGTCAAGGTTTATAAAGTGTGT 327
|||||||||| ||| |||||||||||| ||||| | ||||||||||| |||||||||||
Sbjct 182 TTTTTTGTTT-TTT-CGATCTTGCGGCGGAGATGAGTGCGTCAAGGTTCATAAAGTGTGT 239
Query 328 GACCGTCGGAGATGGTGCCGTCGGAAAAACTTGCATGCTCATTTCTTACACTAGCAATAC 387
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 240 GACCGTCGGAGATGGTGCCGTCGGAAAAACCTGCATGCTGATTTCTTACACAAGCAATAC 299
Query 388 TTTTCCTACTGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGA 447
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCCCTACAGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGA 359
Query 448 TGGCAACACTGTCAATCTTGGATTGTGGGATACTGCTGGTCAAGAGGACTACAACAGGTT 507
||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 360 TGGGAACACTGTCAATCTTGGATTGTGGGATACAGCAGGTCAAGAAGACTACAACAGGTT 419
Query 508 ACGACCTTTGAGTTACCGTGGTGCTGATGTTTTCATTCTTGCTTTCTCTCTTATTAGCAA 567
||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 420 ACGACCTCTGAGTTATCGTGGTGCCGATGTTTTCATTCTTGCTTTCTCTCTCATCAGCAA 479
Query 568 GGCTAGCTATGAGAATATAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGG 627
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCTAGCTATGAGAATATTGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGG 539
Query 628 TGTTCCCATTATCCTTGTTGGG-ACAAAACTCGATCTTCGAGATGACAAGCAATTCTTTA 686
||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 540 TGTTCCCATTATCCTCG-TGGGAACAAAACTCGATCTTCGAGATGACAAGCAATTCTTCA 598
Query 687 TAGATCATCCTGGTGCTGTGCCAATTACTACAAACCAGGGAGAGGAACTGAAGAAACTGA 746
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 TTGATCATCCTGGTGCAGTGCCAATTACAACAAACCAGGGAGAGGAACTGAAGAAACTGA 658
Query 747 TTGGATCTGCTGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGT 806
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGGATCTGCGGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGT 718
Query 807 TTGATGCAGCTATAAAAGTGGTGCTTCAGCCACCAAAGCAGAAGAAGAAGAAAAAGAATA 866
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGATGCAGCCATAAAAGTGGTGCTTCAGCCACCAAAGCAGAAGAAGAAGAAAAAGAATA 778
Query 867 AGAACCGTTGCGCGTTCTTGTGATAAGAAAAACCTCTAAGACTAGGTAAAACCAACTAAA 926
||||||||||||||||||||||||| | | || ||||||| ||||||||| |||||||||
Sbjct 779 AGAACCGTTGCGCGTTCTTGTGATATGCAGAATCTCTAAG-CTAGGTAAA-CCAACTAAA 836
Query 927 GAA-A-GAAGCAGAAGATGATTTCAACTATTTGATTCGGCCC-ATTTTAATATGATAATT 983
||| | |||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 837 GAAGAAGAAGAAGATGATGATTTCAACTATTTGATTCGTCCCCATTTTAATATGATAATT 896
Query 984 TCGACGTGAAGGGAGACATTTCTAGTAGCTTTTTTGTATAGTTGCTAAAACGAGCTTTGT 1043
||||| |||||||||||| || |||||||||||| | |||| | | ||
Sbjct 897 -CGACGGGAAGGGAGACATCTCGAGTAGCTTTTTT-T---GTTG-T---------T--GT 939
Query 1044 TGTTGTTGTGTCTTTTACTCTTTGCTGGTGAATCTTTCGAGTCCACAGACTAAGAGACCG 1103
|| |||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct 940 -GT--------CTTTTACTCTTTGCTGGTGAATCTTTTGAGTTCACAGAGTAAGAGACCG 990
Query 1104 TGTGTTGTACTCTTGCTATGTAGACTAATCTCTGTCTCTCTTCTCTTTTGTTCTTGA-GG 1162
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 991 TGTGTTCTACTCTTGCTATGTAGACTAATCTGTCTCTCTCTTCTCTTTTGTTCTTGATGG 1050
Query 1163 --ATCATTTTGTATTAACAAATGAATCTAATTAATATT 1198
|||| |||||||||||||||||||||||||||||||
Sbjct 1051 GGATCAATTTGTATTAACAAATGAATCTAATTAATATT 1088
Score = 115 bits (62), Expect = 7e-25
Identities = 101/118 (86%), Gaps = 9/118 (8%)
Strand=Plus/Plus
Query 23 TGTTCTCTTAGCTGTCTCAGAGTTGTTGTTTTTCTACTAGTCCCCTCCTCCTATAGGCTC 82
|||||||||||||||||||||||||||||| || | | ||| | |||||||||||||
Sbjct 1 TGTTCTCTTAGCTGTCTCAGAGTTGTTGTTGTTAT--T-GTC---TACTCCTATAGGCTC 54
Query 83 C-TCTCAAAGTCATCTATCAACCGCCAAATCAACcttcttcttcttctt-ttccttct 138
| ||||||||||||| |||||||||||| | ||||| || ||||||||| ||| ||||
Sbjct 55 CCTCTCAAAGTCATCAATCAACCGCCAATTTAACCTCCTCCTTCTTCTTCTTC-TTCT 111
> Ahg926972 jgi|Araly1|926972|scaffold_202533.1
Length=632
Score = 795 bits (430), Expect = 0.0
Identities = 547/604 (91%), Gaps = 5/604 (1%)
Strand=Plus/Plus
Query 291 TTGCGGCAGAGAT--G-GCGTCAAGGTTTATAAAGTGTGTGACCGTCGGAGATGGTGCCG 347
||||||| ||||| | || || ||||||||||||||||| |||||||| ||||||||||
Sbjct 11 TTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGCGATGGTGCCG 70
Query 348 TCGGAAAAACTTGCATGCTCATTTCTTACACTAGCAATACTTTTCCTACTGATTATGTGC 407
|||||||||| || ||||| ||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct 71 TCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACGGACTATGTTC 130
Query 408 CAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGATGGCAACACTGTCAATCTTG 467
||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||
Sbjct 131 CAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACGGTGAATCTTG 190
Query 468 GATTGTGGGATACTGCTGGTCAAGAGGACTACAACAGGTTACGACCTTTGAGTTACCGTG 527
||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 191 GATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTGAGTTACCGTG 250
Query 528 GTGCTGATGTTTTCATTCTTGCTTTCTCTCTTATTAGCAAGGCTAGCTATGAGAATATAG 587
|||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 251 GTGCCGATGTCTTCATTCTTGCATTCTCCCTTATTAGCAAGGCTAGCTATGAGAATGTAG 310
Query 588 CCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGGTGTTCCCATTATCCTTGTTG 647
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 311 CCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATAATCCTTGTTG 370
Query 648 GGACAAAACTCGATCTTCGAGATGACAAGCAATTCTTTATAGATCATCCTGGTGCTGTGC 707
| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 371 GAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCTGGTGCAGTGC 430
Query 708 CAATTACTACAAACCAGGGAGAGGAACTGAAGAAACTGATTGGATCTGCTGTCTACATTG 767
| |||||||||||||||||||||||| | ||||||||||| |||||| | |||||||||
Sbjct 431 CGATTACTACAAACCAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCAATCTACATTG 490
Query 768 AATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGTTTGATGCAGCTATAAAAGTGG 827
|||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||
Sbjct 491 AATGTAGTTCAAAGACGCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCCATAAAAGTGG 550
Query 828 TGCTTCAGCCACC-AAAGCAGAAGAAGAAGAAAAAGAATAAGAACCGTTGCGCGTTCTTG 886
||||||||||||| ||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 551 TGCTTCAGCCACCGAAA-CAGAAGAAGAAGAAAAAGAATAAGAACCGCTGTGTGTTCTTG 609
Query 887 TGAT 890
||||
Sbjct 610 TGAT 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5