BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20100.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472236 jgi|Araly1|472236|fgenesh2_kg.1__2190__AT1G20100.1 1502 0.0
> Ahg472236 jgi|Araly1|472236|fgenesh2_kg.1__2190__AT1G20100.1
Length=1307
Score = 1502 bits (813), Expect = 0.0
Identities = 1183/1350 (88%), Gaps = 71/1350 (5%)
Strand=Plus/Plus
Query 1 TCAACCGCAATTGGtttttttcttctttc-tc-tc-tctctcATCGATTAACAAAATCGA 57
|||||||||||||||||| |||||| ||| || || |||||| || | | ||||
Sbjct 1 TCAACCGCAATTGGTTTTATTCTTC-TTCTTCTTCTTCTCTC-TC---T--C-TCATCGT 52
Query 58 ATCGaaaaaaaaaaTTAGGG-T-TCTTC-TCTCTTCCGTCTCTCGTTATCGATTTCGTTT 114
| ||||||||||||||||| | ||||| |||| ||||||| | | ||||||||||| ||
Sbjct 53 TTAGAAAAAAAAAATTAGGGTTATCTTCTTCTC-TCCGTCTATAGCTATCGATTTCGATT 111
Query 115 TGATTTCGCGCCACAAAGAAGAA-GTTTCATTAGGCGCGAATCTGAAACCTAGGTTCGAT 173
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 112 TGATTTCGCGCCACAAAGAAGAAGGTTT-ATTAGGCGCGAATCTGAAACCTAGGTTCGA- 169
Query 174 TTAGTTCTGTCCGAA-TTACTGTCCGTTGTCTTGTCCGTTAGTCGATTCGATCTGagaaa 232
||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 170 TTAGTCCTGTCCGAATTTACTGTCCGTTGTCTTGTCCGTTAATCGATTCGATCTGAGAAA 229
Query 233 gaaagaaagagaagaagaaaaaaCGATGTCACGATATTTCACATCCCCACCGCCTGTGTA 292
||||| |||| | || ||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 230 GAAAG--AGAG-A-AACAAAAAACGATGTCGCGTTATTTCACATCTCCACCGCCTGTGTA 285
Query 293 TGCGAGGAACTGGGCGAACGGTCAAAACTTGGTCGAATGGACTAAGATCGAAAGACCAAT 352
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 286 TGCGAGGAACTGGGCGAACGGTCAGAACTTGGTCGAATCGACTAAGATCGAAAGACAAAT 345
Query 353 AGTTGATTCTAAAAAGCTGCATCGgaaagagaagaaggagaaaaagaaagaaaagaaatt 412
||| |||||||||||| ||||||||||||||||||| | | || | ||||||||||
Sbjct 346 AGTCGATTCTAAAAAGGTGCATCGGAAAGAGAAGAA-G-G----AG--A-AAAAGAAATT 396
Query 413 aaagaaagagaagaaaTCCCTTGAACAGAAGTATTCCACAACCAAGACAGTCTCAT-ATG 471
||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| | |||
Sbjct 397 AAAGAAAGAGAAGGAATCTCTTGAACAGCAGTATTCCCCAACCAAGACAGTCTC-TGATG 455
Query 472 AATCCGAACAGCTTGAGAA-ATCTTGTTTAACAGAAGAATTTGAGCAACCTCA---GGTT 527
|||| |||||||||||||| | |||||| || |||||| ||||| || ||| |||
Sbjct 456 AATCAGAACAGCTTGAGAAGA-GTTGTTTGACGGAAGAACCTGAGCTACTTCACTCTGTT 514
Query 528 GGATATTTGTCTGATGGTAGCCAGAACAGTAAGAAGAGAAGAAGGGAAACTTCTCCTGCT 587
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GGTTATTTGTCTGATGGTAGCCAGAACAGTAAGAAGAGAAGAAGGGAAACTTCTCCTGCT 574
Query 588 GTTGTTGAGAGTCAAATCAAAGCTACACCTGTAGCTGGTAAACCACTACGGATTCGTATT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 575 GTTGTTGAGAGTCAAATCAAAGCTACACCTGTAGCTGGTAAACCACTACGGATTCGTTTT 634
Query 648 GTTTTCAAGAAACCGAAAGAAG---CTGAAGCTGTACCTCAAGA-G-G-ATCCTGTTTGT 701
|| ||||||||||||||||| | |||| | |||||||||||| | | ||| |||||||
Sbjct 635 GTCTTCAAGAAACCGAAAGAGGTTTCTGAGGTTGTACCTCAAGAAGAGGATCGTGTTTGT 694
Query 702 TCCACTTCAGGGACTCAGAGACCTAGCGAATTACCAAGTTCTGTCTCTCTTCCAA-GTAT 760
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 695 TCCACTTCAGGGACTGAGAGACCCAGCGAAATACCAAGTTCTGTCTCTCTTCCAAAG-A- 752
Query 761 C-TGTGATCATGATGTGGCTGTACCCTCAACTTCTCTTGAGAGTGGCAAGGTAGCAATTA 819
| |||| |||||||| | | ||| |||| ||||||||||||||| |||| | ||||||
Sbjct 753 CATGTGGTCATGATGAGAATATACTCTCATCTTCTCTTGAGAGTGACAAGATTGCAATTC 812
Query 820 TTTCCGAATCAAAGAAGAGAAAGAAACATAAGCCTAGCAAAGAATCCCGGTACAATTCAT 879
|||| |||||||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 813 TTTCTGAATCAAAGAAGAGGAAGAAACATAAGCCAAGCAGAGAATCTCGGTACAATTCAT 872
Query 880 TGTTTGATGAATTAGTTCCTCCCTGTATTTCCTTGGAGGAAGATGATAGCAGCAGCGATG 939
|||||||||||| |||||||| || | ||| ||||||||||||||||||| ||| ||||
Sbjct 873 TGTTTGATGAATGGGTTCCTCCTTGCAATTCGTTGGAGGAAGATGATAGCAACAGTGATG 932
Query 940 ACTGGCTTTTTGGAACAAGTCGGAAAGAAAATGTTTCTTCTGCCAAGTCTTCTTATAAGA 999
|||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct 933 ACTGGCTTTTTGGAACAAGTCGGAAAGATAATGCTTCTTCAACCAAGTCTTCTAATAAGA 992
Query 1000 CTGATGAAGACACGATCATGAGCTTGCAGACGTCAAGAG-ATTGTTCCTCTT-TGCCTAG 1057
|||||||||||| |||||||||||||||||| ||| | | |||||||||||| | |||||
Sbjct 993 CTGATGAAGACATGATCATGAGCTTGCAGACTTCA-GCGGATTGTTCCTCTTAT-CCTAG 1050
Query 1058 AGCTATGTTATTGTCTGAAGTTGGAATTTTTTCATTACCATATACTGTCCCGTTTTAGGT 1117
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1051 AGCTCTGTTATTGTCTGAAGTCGGAATTTTTTCATTACCATATACAGTCCCGTTTTAGGT 1110
Query 1118 CCCATATTGTTTTGTTCTTTCTCAGCTTAGCCTTAGGCCTTAGCTTTGTACAGTTATCAT 1177
|||||||||||||||||||||||| | ||||||||| ||||||||| | ||
Sbjct 1111 CCCATATTGTTTTGTTCTTTCTCAACGTAGCCTTAGTCCTTAGCTT---A---TT----- 1159
Query 1178 TGTAACAATCACAGTGATCTATGATACTTGA---ACGATCTCTGTATTTTTGACACT-AA 1233
||||||||||||||||||||| ||||||| | |||||||||||||||||| || ||
Sbjct 1160 -GTAACAATCACAGTGATCTATAATACTTGTTGTATGATCTCTGTATTTTTGAC-CTTAA 1217
Query 1234 TCAAAAATCATGGTTTCCACTTACTAAACTATCGTCTACATGATTTTTGTCAACTGGAAG 1293
||| |||| ||||||||||| ||||||| |||| ||| ||||| ||||| ||| || |||
Sbjct 1218 TCATAAATTATGGTTTCCACGTACTAAATTATCTTCTTCATGAATTTTGGCAATTGAAAG 1277
Query 1294 TTTTTG-GTTGAATTGATCAATGCGATTGC 1322
||||| |||||||||||||||||||||||
Sbjct 1278 CTTTTGTGTTGAATTGATCAATGCGATTGC 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5