BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20110.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312939 jgi|Araly1|312939|fgenesh1_pm.C_scaffold_1001719 2785 0.0
> Ahg312939 jgi|Araly1|312939|fgenesh1_pm.C_scaffold_1001719
Length=2904
Score = 2785 bits (1508), Expect = 0.0
Identities = 1714/1811 (95%), Gaps = 24/1811 (1%)
Strand=Plus/Plus
Query 70 ATGCAACAGGGAGATTACAATTCGTACTATCACCACCAATACTCTCAATTTCAAAATCCT 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGCAACAGGGAGATTACAATTCGTACTATCACCACCAATACTCTCAATTTCAAAACCCA 60
Query 130 ACTCCGAATCCTAATCCTAATCCCAATCCTTCTCCGCCGGCGCCGGCAACCGTAGCTGGT 189
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACTCCGAATCCTAATCC---T---AATCCTTCTCCGCCGGCACCGGCAACCGTAGCTGGT 114
Query 190 CCGACCGATCTTACTCGAAACACGTACGCATCAGCGCCACCGTTCACCGGCGGTTACGGT 249
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCGACCGATCTTTCTCGAAACACGTACGCATCAGCGCCACCGTTCACCGGCGGTTACGGT 174
Query 250 TCCGCCGATTACTCTAACTATTCACAGAATTACACTCCTTACGGGCAAAACTCTGAGCAT 309
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 175 TCCGCCGATTACTCTAACTATTCACAGAATTACACTCCGTACGGGCAAAACTCTGATCAT 234
Query 310 GTCCCTCCTTCAGCTCCTTCCTTCACTTCACCATCACAA------CCTCCTCCTTCTCCG 363
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 235 GTCCCTCCTTCAGCTCCTTCCTTCACTCCACCATCACAACCGCCTCCTCCTCCTTCTCCG 294
Query 364 CCGGCGACATCACTAAACCCTAATTCTTATTCAACCTTCAACCAACCACCACCTCCACCC 423
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 295 CCAGCGACGTCACTAAACCCTAATTCTTATTCCACCTTCAACCAACCACCGCCTCCCCCC 354
Query 424 ACGATTCATCCACAACCTCTATCCTCTTATGGATCATTTGATTCTACTGCTCCGTATCAG 483
||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 355 ACGATTCATCCACCACCTCTATCCTCTTACGGATCATTTGATTCCACTGCTCCGTATCAG 414
Query 484 CAACCTAC--C-TCGCAACATATGTATTACTCACCGTATGATCAGCATCAAACCTCTGGC 540
||| |||| | | |||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct 415 CAATCTACAACAACACAACCGATGTATTATTCACCGTATGATCATCATCAAACCTCCGGC 474
Query 541 TATTCATCTG------CGC---CTCCTCCTTCATCTGCGCCTGCGCCGAATCCTAATCCC 591
|||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 475 TATTCATCTGCACCTCCTCATGCTCCTCCTTCATCTGCGCCTGCGCCGAATCCTAATCAT 534
Query 592 GCGCCTTATTCATCATCCTTGTACTCTGCACCTCCTTATAGTAGCGGAGGATCATCCATA 651
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 GCGCCTTACTCATCATCCTTGTACTCTGCACCTTCTTATAGTAGCGGAGGATCATCCATA 594
Query 652 CCTCCTTCGTATGAGAAACCGTCAGTGAAATTTGATCAATCTGGTTATGACGGTTATAAC 711
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 595 CCTCCTTCGTATGAGAAACCATCGGTGAAATTTGATCAATCTGGTTATGACGGTTATAAC 654
Query 712 CGGAGCAGATCGGATTTAGGATCTGATCTATACGGAAAACGATCTGATAGCGGAGAATAT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 CGGAGCAGATCGGATTTAGGATCTGATCTATACGGAAAACGATCTGATAGCGGAGGTTAT 714
Query 772 CCTGCTTTTGAAGATTCCTATGGCGATGGCGTTTATGCTTATCAAGGAGGCAAAGTTGAG 831
||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||||| ||||
Sbjct 715 CCTGCTTTTGACGATTCTTATGGTGATGGTGTTTATGCTTATGAAGGAGGCAAAGCTGAG 774
Query 832 CCATACGGTTCTCGTGGAACTGCGCCGAAATCATCGAATTCAACATTGTTCGATGATTAT 891
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 775 CCATACGGTTCTCGTGGAACTGCGCCGAAATCATCCAATTCGACATTGTTCGATGATTAT 834
Query 892 GGACGATCCATTAGCTTTTCTTCTTCAGGGAGAGATTCTTCTGTTAGCTCGAATTCTGCT 951
|||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 835 GGACGATCTATTAGCTTTTCTTCTGGAGGGAGAGATTCTTCTGTTAGCTCAAATTCTGCT 894
Query 952 AAGATCGTGAGAGCTGTTCCTAAGGCTGATGTGCAGGAAGATTCCACTGGTGGTGTGCAG 1011
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 895 AAGATCGTGAGAGCTGTTCCTAAAGCTGATGTGCAGGAAGATTCCAATGGTGGTGTGCAG 954
Query 1012 AAATTTCGTGTCAAATTGTTGGCTGAGACTTATGGACAAACCACAACAGATGTTCTTTGT 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAATTTCGTGTCAAATTGTTGGCTGAGACTTATGGACAAACCACAACAGATGTTCTTTGC 1014
Query 1072 CAGATTGGTTTGGATGGTCTTCGTATGCTTGATCCAAGTACTAGCCGAACTTTGAGAATA 1131
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1015 CAGATTGGTTTGGATGGTCTCCGTATGCTTGATCCTAGTACTAGCCGGACTTTGAGAATA 1074
Query 1132 TATCCTCTTGAGAACATCACAAGATGCGAAAAACTAGATTCGTCTATTCTGGCTTTCTGG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TATCCTCTTGAGAACATCACAAGATGCGAAAAACTAGATTCGTCTATTCTGGCTTTCTGG 1134
Query 1192 TCTAAGACTCCGGTAGACATTGAAGCTAAACGTATCAGATTGCAATCAAATAGTTACACC 1251
||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1135 TCTAAGACTCCGGTAGATATTGAAGCTAGACGTATCAGACTGCAATCAAATAGTTACACC 1194
Query 1252 ACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGGCCAAGGAGATCGGGGGA 1311
|| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1195 ACTAACACGCTTCTGGACACTGTGACTGCTGCAATGTTTCAGGCCAAAGAGATCGGAGGA 1254
Query 1312 AGTAGCAGGCCTCCCACCTCTGGAAAACTGATTGAACAAACTGCTGAGAAGAAAAAAGGA 1371
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1255 AGTAGCAGGCCTCCCACCTCTGGAAAACTGGTTGAACAAACTGCTGAGAAGAAAAAAGGA 1314
Query 1372 TTGGGTGATTGGATGAACATTATAAAGCCTGTTAATGAGGAGAAAGATCATTGGGTACCT 1431
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1315 TTGGGTGATTGGATGAACATTATAAAGCCTGTAAATGAGGAGAAAGATCATTGGGTGCCT 1374
Query 1432 GATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG 1491
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 GATGAAGCTGTATCTAAGTGCACATCTTGTGGTTCAGATTTCGGTGCATTTATACGAAGG 1434
Query 1492 CACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCT 1551
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CACCACTGCAGGAATTGTGGCGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCT 1494
Query 1552 CTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGGCAGAAGTG 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGGCAGAAGTG 1554
Query 1612 TCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAATGTGAGCCTGCAGAGCCAT 1671
|||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1555 TCACAAAGGTTGAGTAATTCCAAGGAAGCCACTAGCAGGAATGTGAGCTTGCAGAGCCAT 1614
Query 1672 GAAGACCTTGCTAGAAAGTTACAGGAGGAAATGGAGAGAAACCGCAAGTCTTCGTCTGGT 1731
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GAAGACCTTGCTAGGAAGTTACAGGAGGAAATGGAGAGAAACCGCAAGTCTTCGTCTGGT 1674
Query 1732 TTGAGGGAAGGATCTGGGAGGCGGATGAAAGAAGTAGCTTGTCCAACATGCACTGTGCAC 1791
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1675 TCGAGGGAAGGATCTGGGAGGCGGATGAAAGAAGTAGCTTGTCCAACATGCACAGTGCAC 1734
Query 1792 TTACAGGTCCAGGTTCCAGTCTCAGGATCAGAGACCATTGAGTGCGGAGTTTGCCAAAAC 1851
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1735 TTACAGGTCCAGGTTCCAATCTCAGGATCAGAGACCATTGAATGCGGAGTTTGCCAAAAC 1794
Query 1852 CCTTTCCTCGT 1862
|||||||||||
Sbjct 1795 CCTTTCCTCGT 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5