BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20135.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312940 jgi|Araly1|312940|fgenesh1_pm.C_scaffold_1001720 1295 0.0
> Ahg312940 jgi|Araly1|312940|fgenesh1_pm.C_scaffold_1001720
Length=2907
Score = 1295 bits (701), Expect = 0.0
Identities = 766/798 (96%), Gaps = 2/798 (0%)
Strand=Plus/Plus
Query 64 GCTCAAACTGGAACATTTTCAGCAGTTCTTGCATTTGGAGATTCGATTCTCGATACTGGT 123
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2095 GCTCAAACTGGAAGATTTTCAGCGGTTCTTGCATTTGGAGATTCGATTCTCGATACCGGT 2154
Query 124 AACAACAATTTGCTCATGACAGTATCAAGAGGCAATTTTTTGCCATATGGACGCGATTTT 183
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2155 AACAACAATTTGCTCATGACAGTGTCAAGAGGCAACTTTTTGCCATATGGACGCGATTTT 2214
Query 184 CCTCATCGTATTCCTACAGGAAGATTCGGGAATGGAAGAGTTCTATCAGATTTAGTTGCC 243
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CCTAATCGTATTCCTACCGGAAGATTCGGGAATGGAAGAGTTCTATCAGATTTAGTTGCG 2274
Query 244 AGCGGTTTAGGGGTAAAAGATCTTTTACCTGCTTTCCGGAGCCCATTTCTTAAAAATAGT 303
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2275 GGCGGTTTAGGGGTAAAAGATCTTTTACCTGCCTTCCGGAGCCCATTTCTTAAAAGTAGT 2334
Query 304 GAACTCGCTACCGGCGTTTGTTTTGCATCCGGTGGTTCAGGGTTAGACAAATTCACTGCA 363
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2335 GAACTCGCTACCGGTGTTTGTTTTGCGTCCGGAGGTTCAGGGTTAGACAAATTCACTGCA 2394
Query 364 TCTATACAGGGGGTTATATGGGTACAAGATCAGGTGAGTGACTTTCAAAGATACT-TAGA 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 2395 TCTATACAGGGGGTTATATGGGTACAAGATCAGGTGAATGACTTTCAAAGATA-TATAGA 2453
Query 423 AAAGTTAAACCAACAAGTTGGAGATGCAGCTAAAGTCAAAGAGATTATAGCCAATGCTGT 482
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2454 AAAATTAAACCAACAAGTTGGAGATCCAGCTAAAGTCAAAGAGATTATAGCCAATGCTGT 2513
Query 483 GATTCTAGTGTCTGCTGGTAATAACGATCTTGCCATCACATATTTTTCAACTCCGAAGAG 542
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 GATTCTAGTTTCTGCTGGTAATAACGATCTTGCCATCACATATTTTTCAACTCCGAAGAG 2573
Query 543 ACAAACGAGATACACTGTCCAAGCATACACTGATATGCTCATCGGTTGGAAAACTACCTT 602
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 ACAAACAAGATACACTGTCCAAGCATACACTGATATGCTCATCGGTTGGAAAACTACCTT 2633
Query 603 CATAAATAGTCTATATGATCTAGGAGCTAGAAAATTTGCAATTCTTGGAACGTTACCGTT 662
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2634 CATGAATAGTCTATATGATTTGGGAGCTAGAAAATTTGCAATTCTTGGAACGTTACCGTT 2693
Query 663 AGGGTGTTTGCCAGGGGCGAGACAAATTACCGGAAATTTGATATGTCTTCCGAATGTAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 AGGGTGTTTGCCAGGGGCGAGACAAATTACCGGAAATTTGATATGTCTTCCGAATGTAAA 2753
Query 723 CTATGGTGCTAGAGTTTATAATGACAAAGTAGCTAACTTGGTCAATCAGTACAACCAAAG 782
||||||||||||||| |||||||| |||||||| ||||||||||| || |||| ||||||
Sbjct 2754 CTATGGTGCTAGAGTATATAATGAAAAAGTAGCGAACTTGGTCAACCAATACAGCCAAAG 2813
Query 783 GCTTCCCAATGGCAAATTCGTCTACATCGATATGTATAACTCACTTCTTGAGGTCATCAA 842
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2814 GCTTCCCAATGGCAAATTCGTCTACATTGATATGTATAACTCACTTCTTGAAGTCATCAA 2873
Query 843 TAATCCTAGCCAATACGG 860
||||||||||||||||||
Sbjct 2874 TAATCCTAGCCAATACGG 2891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5