BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20140.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481069 jgi|Araly1|481069|fgenesh2_kg.4__129__AT1G20140.1 704 0.0
Ahg920975 jgi|Araly1|920975|scaffold_102256.1 669 0.0
> Ahg481069 jgi|Araly1|481069|fgenesh2_kg.4__129__AT1G20140.1
Length=658
Score = 704 bits (381), Expect = 0.0
Identities = 591/683 (87%), Gaps = 51/683 (7%)
Strand=Plus/Plus
Query 87 GAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGC 146
||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68
Query 147 TGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCC 206
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128
Query 207 ACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGT 266
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188
Query 267 TGAAGCCGCTGCTGAAGCTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACGA 326
||||||||| ||||| |||| ||||| |||||||||| ||||||| |||||||||| ||
Sbjct 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248
Query 327 GCTTAA-GAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTCA 385
||||| | | ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 249 ACTTAAGGCA-TGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCA 307
Query 386 TCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTGG 445
|| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 308 TCCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGG 367
Query 446 CTGATCA-GATGAGAGGCAAAACTCCAGAGCAGATGCGTGCA-CACTTCAACATCAAGAA 503
||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 368 CTGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTG-AGCACTTCAACATCAAGAA 425
Query 504 CGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGTG 563
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 426 CGATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTG 485
Query 564 ATTGGATCGGAT-CTGAAGGGTGTTTAGGAATCTCTAGTCTTT-CTATTTAGATGTGTTT 621
||||||| |||| || | ||||| | | | | || || || || | | |
Sbjct 486 ATTGGATTGGATTCT------T-TTTAG-A-T-T-T-GT-TTAGCT-TTCA-A-G----- 524
Query 622 AGCTTTCAAGATTTCGGATTGttttttttttctttctttttCTCTTCGATTGGAGTTGT- 680
| |||| |||| || || ||| ||| || || ||||| || || | ||||||||||
Sbjct 525 A--TTTCG-GATT--GGCTT-TTTCTTTCTT-TT-CTTTT-CTTTTGGTTTGGAGTTGTT 575
Query 681 CCTTGTC----GA-T----GAA-AA--CCTAATGCTTTGTTCTACTAACAACATCTATTG 728
||||||| || | ||| || |||||||||||||||||||||||| ||||||||
Sbjct 576 CCTTGTCTTTAGAATTTAAGAAGAAAACCTAATGCTTTGTTCTACTAACAAAATCTATTG 635
Query 729 GTTTTTATGAGAAATATTTGAGA 751
|||||||||| ||||||||||||
Sbjct 636 GTTTTTATGAAAAATATTTGAGA 658
> Ahg920975 jgi|Araly1|920975|scaffold_102256.1
Length=529
Score = 669 bits (362), Expect = 0.0
Identities = 450/492 (91%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 87 GAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGC 146
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 32 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGATCGATGAAGCCGTCGC 91
Query 147 TGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCC 206
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 92 GGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 151
Query 207 ACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGT 266
||||||||||| || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 152 GCTTCCCAATGTTACTGGAGCCATCCTTGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 211
Query 267 TGAAGCCGCTGCTGAAG-CTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACG 325
||||||||| |||| || |||| |||||| ||||||| | ||||||| | |||||||| |
Sbjct 212 TGAAGCCGCGGCTG-AGTCTGGCGGAGACGAGGATTTTTGTGGTTCCACCGAGAACGATG 270
Query 326 AGCTTAA-GAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTC 384
| || || | | ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 271 AACTCAAGGCA-TGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACACTCTTCGATCTC 329
Query 385 ATCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTG 444
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 330 ATCCTGGCTGCGAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTG 389
Query 445 GCTGATCA-GATGAGAGGCAAAACTCCAGAGCAGATGCGTGCA-CACTTCAACATCAAGA 502
|||||| | ||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 390 GCTGAT-ATGATGAGAGGAAAAACTCCAGAGCAGATGCGTG-AGCACTTCAACATCAAGA 447
Query 503 ACGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGT 562
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 448 ACGATTACACACCTGAGGAAGAGGAGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGT 507
Query 563 GATTGGATCGGA 574
|||||||| |||
Sbjct 508 GATTGGATTGGA 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5