BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20180.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472247 jgi|Araly1|472247|fgenesh2_kg.1__2201__AT1G20180.1 2130 0.0
> Ahg472247 jgi|Araly1|472247|fgenesh2_kg.1__2201__AT1G20180.1
Length=1423
Score = 2130 bits (1153), Expect = 0.0
Identities = 1343/1433 (94%), Gaps = 19/1433 (1%)
Strand=Plus/Plus
Query 35 ctctctctatctttgtctAACCAATCAACAAAAAGACTTATGTATATAAAGAAACAAGAA 94
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTATCTTTGTCTAACCAATCAACATAAAGACTTATGTATATAAAGAAACAAGAA 60
Query 95 GCCTGTCTATTATTCACCTAAATCGCCTCTCTCTT-TGAGTTCCATCGAAGATGTTGAAA 153
|| |||||||||||||||| |||||| | | | || | |||||||| ||| |||||||||
Sbjct 61 GCTTGTCTATTATTCACCTGAATCGCTTTTGTTTTCTAAGTTCCATTGAAAATGTTGAAA 120
Query 154 GTGAAGAATTTTCTTGGTTCTAGATTAAAGTCTTTCCCTACAAGAAAAGGAAAGTCCGAC 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGAAGAATTTTCTTGGTTCTAGATTAAAGTCTTTCCCTACAAGAAAAGGAAAGTCCGAG 180
Query 214 AAGGAATGTTGTCGTAGCTTGACGTCGAAGCTAAGTGTTAATGAAGAGTACAAGGAAGCA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGAATGTTGTCGTAGCTTGACGTCGAAGCTAAGTGTTAATGAAGAGTACAAGGAAGCA 240
Query 274 TTTAGAACAAACTCCTACTTAGAGACTCGGACAAAAGCAGAAGATCAATTAGGCATAACA 333
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGAACAAACTCCTACTTAGAGATTCGGACAAAAGCAGAAGATCAATTAGGCATAACA 300
Query 334 ---TCATGTAGCAAActctcttcttcttctccttctccttcttcatcttcagatcttagc 390
||||||||||||||||| || | ||| ||||||||| || |||||||||||||||
Sbjct 301 ACATCATGTAGCAAACTCTC--CT-C--CTC-TTCTCCTTCATCTTCTTCAGATCTTAGC 354
Query 391 ttccattcacacttcaCCGATTACTTGCT-TGACCCTCCACAAGAAACACTTGATGCCCT 449
|||||||||||||||| | |||| ||| | | ||||||| |||||||| || ||||| ||
Sbjct 355 TTCCATTCACACTTCAGCAATTAGTTGTTCT-ACCCTCCTCAAGAAACTCTAGATGCTCT 413
Query 450 GATGCAAGACTCGAGTT-TAGACAATCTTATAGTTACGTTTTTCGACTTGAGCTCCGAAG 508
|||||||||||||| || | ||||||||| |||||| ||||||||||| ||||||||||
Sbjct 414 GATGCAAGACTCGA-TTATCGACAATCTTCTAGTTAATTTTTTCGACTTTAGCTCCGAAG 472
Query 509 CTTGTGACGTGTGTGAGACTCTTCTTCAGTGCCTCCAACAAATCAAGATTAATCACAACA 568
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 473 CTTGTGACGTGTGTGAGACTCTTCTTCAATGCATCCAACAAATCAAGATCAATCACAACA 532
Query 569 AAATCAAAAGGGTTATGAAGATTGGGAAAAGGGTTTGTAACGGTGCTAAAACCTTGGAAT 628
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAATCAAAAGGGTTATCACGATTGGGAAAAGGGTTTGTAACGGTGCTAAAACCTTGGAAT 592
Query 629 GTAGCCCCGAGATGCTCTGTGCTTTGATATTTCAAGAACTTTCGAGATTTGCCGCGCTGA 688
|| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 593 GTGGCCCCGAAAAGCTTTGTGCTTTGATATTTCAAGAGCTTTCGAGATTTGCCGCACTGA 652
Query 689 AAAACCCTTTGTGTCGTATCGTCAATGAAGCACAGTTTCGTATAGTTCACGATGCAAACT 748
| |||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 653 AGAACCCTCTGTGTTGTATCATCAATGAAGCTCAGTTTCGTGTAGTTCACGATGCAAACT 712
Query 749 CGGATTTGCTCACCAAACTGACATCGAAAAAG-AGAAGAATAAGAAGAAAAATCAGGTTC 807
|||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 713 CGGATTTGCTCACCAAGTTGACATC-AAAAAGGAGAAGAATCAGAAGAAAAATCAGGTTC 771
Query 808 TTTAAATTCTGCAAGAAGCTAGGAGGTTATAGCCTAGTGATTACTCATAGCGCGATTGTC 867
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTAGATTCTGCAAGAAGCTAGGAGGTTATAGCCTAGTGATTACTCATAGCGCGATTGTC 831
Query 868 ATTACATTGCTGATCATAGCTCTTCACAGCATACTCGGCGTTTTCGCAGCTCCTGCGTTG 927
||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 832 ATTACATTGCTTATCATAGCTCTTCACAGCATAATCGGCGTTTTAGCAGCTCCTGCGTTG 891
Query 928 CTCGGTCTATGTTCGTTCTGTCTTTTGAGGAAGAAGAAAGCGAAAGGAAGAATGCATAAG 987
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTCGGTCTATGTTCATTGGGTCTTTTGAGGAAGAAGAAAGCGAAAGGAAGAATGCATAAG 951
Query 988 AGCAATAAAGATACAACTCTAGAGAAGCTCGGGACACAAATCGACATTGCAGCTAAAGGA 1047
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGCAAGACAGATACAACTCTAGAGAAGCTCGGGACACAAATCGACATTGCAGCTAAAGGA 1011
Query 1048 ATGTTCATATTGAT-AAACGATTTGGATACGTTGAGTAGACTTGCTGGGAGATTATGCGA 1106
|||||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 1012 ATGTTCATATTGATGAAA-GATTTGGATACATTGAGTAGACTTTCCGGGAGATTATGCGA 1070
Query 1107 TGAGATAGAGCATAGAAAAACAGTAGCTGCGATGTGCGCAAAGAGTAGGAAGATTGAAGT 1166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGAGATAGAGCATAGAAAAACCGTAGCTGCGATGTGCGCAAAGAGTAGGAAGATTGAAGT 1130
Query 1167 GTTAAAGGAAGCATTGAGGGAGTTTAATGGACATGAAGAAAAATTCTCAGATCAATTGCA 1226
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GTTAAAGGAAGCATTGAGAGAGTTTAATGGACATGAAGAAAAATTCTCAGATCAATTGCA 1190
Query 1227 AGAGCTTGAAGAACATCTCTATCTATGTTTCCACACTATTAACCGATCAAGAAGGCTAGT 1286
||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1191 AGAGCTTGAAGAACACCTCTACCTCTGTTTCCACACTATTAACAGATCAAGAAGGCTAGT 1250
Query 1287 GTTAGCGCAAATCACAGGACAAAGTTCTTGAATCTTGA-TCTTTCATTCTTTTGGTTCAT 1345
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1251 GTTAGCGCAAATCACAGGACAAAGTTCTTGAATCTTGAATCTTTAATTCTTTTGGTTCAT 1310
Query 1346 CAAAATAACAAATACTTTTGTAGGGTTTATAAACTACTTATTGTAATAAATCTGTAAGAA 1405
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1311 CAAAATAATAAATACTTTTGTAGGGTTTATAAACTACTTATTATAATAAATCTGTAAGAA 1370
Query 1406 TATCTTTAAAAGTTTTCTTTATGTTTCAAGTGAAACTGAGGCCATGGAAGTAA 1458
||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1371 TATCTTTCAAAGTTTTCTTTATGTTTCAAGTGAAACTGAGGCCATGAAAGTAA 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5