BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20190.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472249 jgi|Araly1|472249|fgenesh2_kg.1__2203__AT1G20190.1 1511 0.0
> Ahg472249 jgi|Araly1|472249|fgenesh2_kg.1__2203__AT1G20190.1
Length=1118
Score = 1511 bits (818), Expect = 0.0
Identities = 1039/1137 (91%), Gaps = 49/1137 (4%)
Strand=Plus/Plus
Query 2 TACTACATTAGTTTACACTCGCTTCCCACCTTTATTTAAACAACTCTCACCTCCTTCACT 61
||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TACTACACTAATTTACACTCACTTCCCACCTTTATTTAAACAACTCTC-TCTCCTTCACT 59
Query 62 CGatcatcatcatcatcatc-TC-T--T-TC-TTC----TTCCAAAAGTCATAATCATGT 111
|||||||||||||||||||| || | | || ||| ||| |||| | ||||||||||
Sbjct 60 CGATCATCATCATCATCATCATCATAATCTCTTTCTTTGTTCGAAAAATTATAATCATGT 119
Query 112 CAAAGTCTCTAGCTGGATTGGCGGTTTTGGCCGCTCTTTTTATTGCGGTTGATGCGTTTA 171
|||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 120 CAAAGTCTCTAGCTGGCTTGGCGGTTTTGGCCACTCTTTTTATTGCGGTTAACGCGTTTA 179
Query 172 GGCCTTCTGGTTTAACTAATGGTCACGCTACATTCTATGGAGGAAGTGACGCTTCTGGAA 231
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 AGCCTTCTGGTTTAACTAATGGTCACGCTACGTTCTATGGAGGAAGTGACGCTTCTGGAA 239
Query 232 CAATGGGTGGAGCTTGTGGTTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACGG 291
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CAATGGGTGGAGCTTGTGGGTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACAG 299
Query 292 CGGCGTTAAGCACGGCTCTGTTCAACGACGGAGCTTCTTGCGGAGAATGCTATAGGATAA 351
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 300 CGGCGTTAAGCACGGCTCTCTTTAACGACGGAGCTTCTTGCGGCGAATGCTATAGGATAA 359
Query 352 CGTGTGATCACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTGTGATTACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 419
Query 412 CCACTAACTTTTGCCCACCAAACTTTGCTTTGCCTAACAACAACGGTGGTTGGTGCAATC 471
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 420 CCACTAACTTTTGCCCACCAAACTTTGCCTTGCCTAATAACAACGGTGGTTGGTGCAATC 479
Query 472 CGCCGCTTAAACATTTCGACATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 531
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGCCGCTCAAACATTTCGATATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 539
Query 532 GAGGAATCGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTTAGAT 591
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 GAGGAATTGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTGAGAT 599
Query 592 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTGAATATTCAAAATGTAGGAGGAGCAG 651
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 600 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTCAACATTCAAAATGTAGGAGGAGCAG 659
Query 652 GTTCTATTAAATCTGTATCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 711
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTCGATTAAATCTGTCTCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 719
Query 712 ACTGGGGAGCTAATTGGCAATCGAATGCTTATCTAGATGGTCAAGCTCTCTCTTTCTCCA 771
| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 720 ATTGGGGAGCTAATTGGCAATCAAATGCTTATCTCGATGGTCAATCTCTCTCTTTCTCCA 779
Query 772 TTACCACTACTGATGGTGCTACTAGAGTCTTTCTCAATGTTGTTCCTTCTTCTTGGTCTT 831
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 780 TTACCACTACCGATGGTGCTACAAGAGTCTTCCTCAATGTTGTTCCTTCTTCCTGGTCTT 839
Query 832 TTGGACAGATTTATTCTTCCAACGTTCAGTTTTAAGttttttttttt-------GT---T 881
||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 840 TTGGACAGATTTATTCTTCCAGCGTTCAGTTTTAAGTTTTTTTTTTTTTTTTTTGTGGGT 899
Query 882 T-TGTATGAAATATCATTGGCAGTGGTCGCGCTTTGAGTCTGTTTCTTTTCTCCCTGAGC 940
| ||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 900 TCTGTCTGAAATATTATTGGCAGTGGTCGCGCTCTGAGTCTGTTTCTTAACTCCCTGAGC 959
Query 941 GACCCGCCCTCTTTGttttttttATCTTATGGTATGATGGGTCTGTTAATACAAAAGACC 1000
|||||||| |||| || ||| ||||||||||||||||||| ||||||
Sbjct 960 GACCCGCC-TCTT------------CT---GGTTTGATGGGTCTGTTAATACAGAAGACC 1003
Query 1001 CGATATGATTTGAGGGTA-TATGATTATATGAA--GT---GTAT-T--GTATTTGAATGT 1051
|||| |||||||||| | |||||||||||||| || |||| | ||||||||||||
Sbjct 1004 CGATTTGATTTGAGGAAAATATGATTATATGAAATGTATTGTATATTTGTATTTGAATGT 1063
Query 1052 TTCAGACTCGAAAAAGATTCTGTAGCAAAAGGAgttttaacacatttgtacttggtt 1108
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1064 TTCAAACTCGAAAA-GATTCTGTAGCAAAAGGAGTTT-AACACATTTGTACTTGGTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5