BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20200.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472250 jgi|Araly1|472250|fgenesh2_kg.1__2204__AT1G20200.1 2536 0.0
> Ahg472250 jgi|Araly1|472250|fgenesh2_kg.1__2204__AT1G20200.1
Length=1777
Score = 2536 bits (1373), Expect = 0.0
Identities = 1655/1791 (92%), Gaps = 20/1791 (1%)
Strand=Plus/Plus
Query 1 AAAAAGGAAAATACTTAGGAAAGAAAAGAGTCTCAGCAGCATCAGCTCGTCCTTAAATCT 60
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1 AAAAAGAAAAATACTTAGGAAAGAAAAGAGTCTTAGCAGCATCAGCTCGACCTCAAATCT 60
Query 61 GATCCATCATCGTCAC-TT-TCTCCCGGCGAATTCCGTTTTATCGATTTAAGTAACGAGA 118
|||||| ||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GATCCACCATCGTCACTTTCTCTCCCGGCGAATTCCGTCTTGTCGATTTAAGTAACGAGA 120
Query 119 TTTGTGCAAAGATGACTCAGGACGTGGAGATGAAAGATAACAACACCCCTTCTCAATCGA 178
|||| || |||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 121 TTTGAGC-AAGATGACTCAGGATGTAGAGATGAAAGATAACAATACTCCTTCTCAATCGG 179
Query 179 TTATCTCTTCTTCTACCTCTACTATGCAGAATTTGAAGGAGATTGCAGCACTCATCGATA 238
| ||||||||||||||||| || |||||| ||||||||||||||||| |||| |||||||
Sbjct 180 TCATCTCTTCTTCTACCTCCACGATGCAGCATTTGAAGGAGATTGCAACACTGATCGATA 239
Query 239 CTGGGTCTTACACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTGCGTCTCACTATAGGGC 298
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 240 CTGGGTCTTATACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTCCGTCTTACTATAGGGC 299
Query 299 TTAGGCAG-AAACTCACCGGCTCTGTGCTCTCTTCCTTCCTGGATTTTGCTTTGGTTCCA 357
|||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 TTAGGC-GTAAGCTCACCGGCTCTGTGCTCTCTTCGTTCCTGGATTTTGCTTTGGTTCCA 358
Query 358 GGATCCGAAGCTCACTCTCGCCTCTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATG 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 GGATCCGAAGCTCACTCTCGCCTTTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATG 418
Query 418 GAAGTTGATACTGCCTCATCGGCCACACAAGCTGCTCCTTCTAAGCATCTACCTGCAGAG 477
||||||||||| || |||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 419 GAAGTTGATACAGCTTCATCGGCTACGCAAGCTCCTCCTTCTAAGCATCTTCCTGCAGAG 478
Query 478 CTCGAGATCTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAGAAGTACAAC 537
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 CTCGAGATTTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAAAAGTACAAC 538
Query 538 GAGGCTAAAGCTTGTTCTTCAGCAAGCATTGCTCGTCTCAAGAACGTCAACCGAAGGACC 597
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 GAGGCTAAAGCTTGTTCGTCAGCAAGCATTGCTCGTCTCAAGAACGTTAACCGAAGGACC 598
Query 598 ATTGATGTGATAGCATCAAGACTCTACTTTTACTATTCTTTGAGTTATGAGCAAACCGGT 657
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 599 ATTGATGTGATAGCATCCAGACTCTACTTTTACTATTCCTTGAGTTACGAGCAAACCGGT 658
Query 658 GATCTTGCTGAAATTCGCGGTACTCTTCTTGCGTTGCATCATTCTGCAACGCTAAGACAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 GATCTTGCTGAAATTCGCGGTACTCTTCTTGCGTTGCATCATTCTGCAACGTTAAGACAT 718
Query 718 GATGAGCTGGGTCAGGAAACCCTTCTGAACCTGTTGCTACGTAACTAT-TTGCATTACAA 776
||||| |||| |||||||| ||||||||| |||| |||||||||||| || ||||||||
Sbjct 719 GATGAATTGGGGCAGGAAACTCTTCTGAACTTGTTACTACGTAACTATCTT-CATTACAA 777
Query 777 CCTCTATGATCAGGCAGAGAAGCTAAGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAA 836
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 CTTATATGATCAGGCGGAGAAGCTACGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAA 837
Query 837 CCAACAGTTTTGTAGGTACCTTTTCTATCTCGGGAAGATTCGTACTATTCAGCTCGAATA 896
|||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||
Sbjct 838 CCAACAGTTTTGTAGGTATCTGTTCTACCTCGGGAAGATTCGTACGATTCAGCTTGAGTA 897
Query 897 TACGGACGCAAAAGAGAGCCTTCTTCAGGCGGCCAGGAAAGCCCCTATAGCAGCTTTGGG 956
||| || || ||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 898 TACTGATGCGAAAGAGAGCCTCCTTCAGGCTGCCAGGAAAGCCCCTATTGCTGCTTTGGG 957
Query 957 CTTCAGGATCCAATGCAATAAATGGGCAATTCTGGTTCGTCTACTGCTGGGTGAGATACC 1016
|||||| || ||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 958 CTTCAGAATTCAATGTAATAAATGGGCAATTCTGGTTCGTCTGCTACTGGGTGAAATACC 1017
Query 1017 AGAGCGTTCTATCTTCACTCAAAAGGGTATGGAGAAGGCCCTCAGACCCTACTTCGAGCT 1076
||| || || ||||||||||||||||| |||||||| |||||||| || ||||| |||||
Sbjct 1018 AGAACGGTCGATCTTCACTCAAAAGGGAATGGAGAAAGCCCTCAGGCCTTACTTTGAGCT 1077
Query 1077 AACAAATGCGGTTAGGATTGGGGACTTGGAGTTGTTTAGGACAGTCCAGGAGAAGTTCTT 1136
|| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1078 TACCAATGCGGTTAGGATTGGTGACTTGGAGCTGTTTAGGACAGTACAGGAGAAGTTCTT 1137
Query 1137 GGACACATTTGCTCAAGACAGAACGCACAATCTCATCGTGCGACTCCGCCACAATGTCAT 1196
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1138 GGACACATTTTCTCAAGACAGAACGCACAATCTCATCGTGAGACTCCGCCACAATGTCAT 1197
Query 1197 CAGGACTGGACTGCGGAACATAAGTATCTCCTACTCAAGAATCTCTTTACCCGATGTTGC 1256
|||||||||| |||| |||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1198 CAGGACTGGATTGCGCAACATAAGCATCTCATACTCGAGAATCTCTTTACCCGATGTTGC 1257
Query 1257 CAAAAAGCTGAGGCTCAACTCTGAAAACCCTGTGGCTGATGCGGAAAGCATCGTGGCAAA 1316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAAAAGCTGAGGCTCAACTCCGAAAACCCTGTGGCTGATGCGGAAAGCATCGTGGCAAA 1317
Query 1317 GGCCATACGCGACGGAGCTATTGATGCTACAATCGATCACAAAAACGGATGCATGGTCTC 1376
|||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1318 GGCCATTCGTGATGGAGCGATTGATGCGACCATCGATCACAAAAACGGATGGATGGTCTC 1377
Query 1377 CAAAGAAACTGGGGACATCTACTCGACGAATGAGCCACAAACTGCGTTCAACTCAAGAAT 1436
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1378 CAAAGAAACAGGGGACATCTACTCAACGAACGAGCCACAAACTGCATTCAACTCAAGAAT 1437
Query 1437 TGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTCCTAACAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTCCTAACAC 1497
Query 1497 TCACaaggagaaagaaagcgatgagaagaggagagagaggaagcaacaggaagaagagCT 1556
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1498 TCACAAGGAGAAAGAGAGCGATGAGAAGAGGAGAGAGAGAAAGCAACAAGAAGAAGAGCT 1557
Query 1557 TGCTAAGCATATGGCTGAGGAAGACGATGATGATTTTTAGACAAAGGTCATCTATTTCTT 1616
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1558 TGCTAAGCATATGGCCGAGGAAGACGATGATGATTTTTAGACAAAGGTAATCTCTTTCTG 1617
Query 1617 ATAAGAGTTGACTCTCCATCTGTCTCACtttttttATGTTCACAAGTTTACTTGGTACTC 1676
||| ||||| |||||| ||| ||| ||||| | |||||||||||||||| ||||||
Sbjct 1618 ATA-GAGTTTACTCTC--TCT--CTC--TTTTTCT--GTTCACAAGTTTACTTTGTACTC 1668
Query 1677 TTCTCATCGTCTCTAAGTGTTTCTTTATTGAGGATTTTTATCCTCAGGAACCTTTTTATT 1736
| |||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1669 TGCTCATCGT-TCTAAGTGTTT-T--ATTGAGGATTTTTATCCTCCGGAACCTTTTTATT 1724
Query 1737 ACTCTGGTTTCACTTTAGGAAAAGATATTTATCTTGTTGGTTTCAGAAGAT 1787
||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1725 ACTTTGGTTTCACTTTAGGAAAAGAGATTTATATTGTTGGTTTCAGAAGAT 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5