BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20220.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726 1415 0.0
Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1 78.7 1e-13
> Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726
Length=1590
Score = 1415 bits (766), Expect = 0.0
Identities = 902/964 (94%), Gaps = 24/964 (2%)
Strand=Plus/Plus
Query 228 GATGGATAAGTATCAGAGAGTTGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATGA 287
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 636 GATGGATAAGTATCAGAGAGTGGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATGA 695
Query 288 GATTCGTATCACCAGTATGGGTAGGGCACGGAACTACATCACCTATGCGATGGCTCTTCT 347
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 696 GATTCGTATCACCAGTATGGGTAGGGCACGAAACTACATCACCTATGCGATGGCTCTTCT 755
Query 348 TCAGGAAAACAAATCGAATGAAGTTATCTTCAAGGCTATGGGAAGAGCTATCAACAAGAG 407
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 756 TCAGGAAAACAAATCGAATGAAGTTATTTTCAAGGCTATGGGAAGAGCTATCAACAAGAG 815
Query 408 TGTGACCATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCACATCTAT 467
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 816 TGTGAACATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCTCATCTAT 875
Query 468 TGGATCAACGGACATTACAGATACCTGGGAACCTACAGAGGAAGGCCTTCAAACAATTGA 527
|||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 876 TGGATCCACGGCCATAACAGATACCTGGGAACCTACAGAGGAAGGCCTTCTTCCAATTGA 935
Query 528 GACCACGAGGCATGTGTCGATGATAACCATAACACTTTCCAAGGAGCAGTTGAACACATC 587
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 936 GACCACAAGGCATGTGTCGATGATAACCATAACACTTTCGAAGGAGGAGTTGAACACATC 995
Query 588 CTCAGTTGGGTACCAGTGTCCGATTCCTATTGAGATGGTGAAGCCATTGGCTGAGATTGA 647
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 996 CTCGGTTGGGTACCAGTGTCCTATTCCTATTGAGATGGTGAAGCCATTCGCTGAGGTTGA 1055
Query 648 CTACGAAGGGCAAGACGGATCTCCTagaggcagaggaggaagaagaggtagaggaggaag 707
|||||||| ||||| ||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1056 TTACGAAGGACAAGAGGGATCTCCTAGAGGCAGAGGAGGAAGA-G-GC-AGAGGAGGAAG 1112
Query 708 aggaaggggaaggggaagaggtggtagaggaaATGGACCTGCGAATGTTGAGTATGATGA 767
|||||| |||||||||||||| || |||||||||||| || ||||| ||||||||||||
Sbjct 1113 AGGAAGAGGAAGGGGAAGAGGCGGCAGAGGAAATGGATATGTGAATGCTGAGTATGATGA 1172
Query 768 TGGAGGAAGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGG 827
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1173 TGGAGGAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGG 1232
Query 828 AGGAAGGGGAAGAGGCGGCAGAGGAAGTGGATATGTGAACAATGAGTATAATGATGGAGG 887
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1233 AGGAAGGGGAAGAGGCGGCAGAGGAAGCGGATATGTGAACAATGAGTATAATGATGGAGG 1292
Query 888 TATGGAGCAGGACCGGTCATATGGCAGAGGACGCGGGCGTGGGAGAGGAGGTGGACGTGG 947
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1293 TATGGAGCAGGACCGGTCATATGGCAGAGGACGAGGGCGTGGGAGAGGAGGAGGACGTGG 1352
Query 948 TGGTCGAGGAAGAGGAGGTTACAATGGCCC-CC-C---AC-------C--A-CCTTACTA 992
|||||||||||||||||| ||||||||||| || | || | | ||||||||
Sbjct 1353 TGGTCGAGGAAGAGGAGGGTACAATGGCCCTCCACCTTACTATGAAGCTCAACCTTACTA 1412
Query 993 TGAAGCTCAACAAGATGGAGGAGACTATGGATACAACAATGTTGCTCCTCCAGCAGACCA 1052
|||||||||||||||||||| | ||||||| | | ||||| ||||||||||||||||||
Sbjct 1413 TGAAGCTCAACAAGATGGAG-A--CTATGGA-A-A-CAATGCTGCTCCTCCAGCAGACCA 1466
Query 1053 TGGATATGATGGTCCTCCGCCTCAGGGACGTGGACGTGGCCGTGGAAGGGGAGGTCGTGG 1112
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1467 TGGATATGATGGTCCTCCGCCTCAGGGCCGTGGACGTGGCCGTGGAAGGGGAGGTCGTGG 1526
Query 1113 AAGAGGAGGAGGCCGTGGTGGATTCAACAGATCAAATGGAGCACCTATCCAGGCTGCTGC 1172
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1527 AAGAGGAGGAGGCCGTGGTGGATTCAACAGATCAAATGGAGCACCTATTCAGGCTGCTGC 1586
Query 1173 ATGA 1176
|||
Sbjct 1587 TTGA 1590
Score = 174 bits (94), Expect = 1e-42
Identities = 110/118 (93%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 770 GAGGAAGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGGAG 829
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1118 GAGGAAGGGGAAGAGGCGGCAGAGGAAATGGATATGTGAATGCTGAGTATGATGATGGAG 1177
Query 830 GAAGGGGAAGAGGCGGCAGAGGAAGTGGATATGTGAACAATGAGTATAATGATGGAGG 887
||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1178 GAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGGAGG 1235
Score = 159 bits (86), Expect = 4e-38
Identities = 106/116 (91%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 715 ggaaggggaagaggtggtagaggaaATGGACCTGCGAATGTTGAGTATGATGATGGAGGA 774
||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||
Sbjct 1177 GGAAGGGGAAGAGGTGGCAGAGGAAATGGATATGTGAACAATGAGTATGATGATGGAGGA 1236
Query 775 AGGGGAAGAGGTGGCAGAGGAAACGGATATGTGAACAATGAGTATGATGATGGAGG 830
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1237 AGGGGAAGAGGCGGCAGAGGAAGCGGATATGTGAACAATGAGTATAATGATGGAGG 1292
> Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1
Length=1595
Score = 78.7 bits (42), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 1057 TATGATGGTCCTCCGC--CTCAG-GGACGTGGACGTGGCCGTGGAAGGGGAGGTCGTGGA 1113
|||||||||||||| | | | || |||||||| || || ||||||||||||||||||
Sbjct 1055 TATGATGGTCCTCCTCAAGGCCGTGGGCGTGGACGCGGACGCGGAAGGGGAGGTCGTGGA 1114
Query 1114 AGAGGAGGAGGCCGTGGTGG 1133
||||||||||| ||||||||
Sbjct 1115 AGAGGAGGAGGTCGTGGTGG 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5