BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20240.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1 1452 0.0
> Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1
Length=1674
Score = 1452 bits (786), Expect = 0.0
Identities = 1037/1157 (90%), Gaps = 22/1157 (2%)
Strand=Plus/Plus
Query 1 ATGTGTGTTGGTTTCGCGGTAACTCGAAATCGAACCACCATGAGATTCAAGATCGTCTGC 60
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 1 ATGTGTGTTGGTTTTGCGGTAAATCGAAATCGAACCACTATGAGATTCAAGATCGTTTGC 60
Query 61 ATACTCGAGACGCAAACGCTGTATAGATTCGAGATCAGCGACGGATACTCATGGAGATTA 120
|||||||||| ||||||| | || | ||||||||||||||||||||| ||||||||||||
Sbjct 61 ATACTCGAGATGCAAACGGTCTACAAATTCGAGATCAGCGACGGATATTCATGGAGATTA 120
Query 121 TCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCACGACGCTAATGAAACCTGTT 180
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 TCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCATGACGCGAATGAAACCTGTT 180
Query 181 TACTTGGACAACACTCTTCATTGGTTGAGAAACGATGGGAGCATCATAGCTTTTAATCCC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TACTTGGACAACACTCTTCATTGGTTGAGAAATGATGGGAGCATCATAGCTTTTAATCCC 240
Query 241 GAGACAGAGGAAGCACGACTGATTCCTTCAAGATTCAGATT---TG---ATCACA-GG-- 291
||||||||| |||||||| |||||||||| ||||||||||| || || | | ||
Sbjct 241 GAGACAGAGCAAGCACGATTGATTCCTTCCAGATTCAGATTCGATGATAATTATATGGTC 300
Query 292 --AATA-CATTATTTGCGGCAAACGAAAATATCAACCGCCTGACTTTGATATCAAAGACG 348
|| | |||||||||| ||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 301 ATAAAACCATTATTTGCAGCAAACGAAGATATCAACCGCCTGACTTTGATATCAATGGCG 360
Query 349 GTAAAAAGAATATCAGTTTACACACTACTCGAGGATTCGAAGTGGGCTCTCGCCAAGCGG 408
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 ATAAAAAGAATCTCAGTTTACACACTACTCCAGGATTCGAAGTGGGCTCTCGCCAAGCGG 420
Query 409 ATCAAGAACATATCTATGGATAAAAGAGATATTAGATACTCGAACGTGGTTGCGTACGAT 468
|||||| ||||||||| ||| | |||||| |||| | |||| | |||||||||||||||
Sbjct 421 ATCAAGTACATATCTACGGACAGAAGAGAGATTATAGCCTCGGATGTGGTTGCGTACGAT 480
Query 469 GACAAGTGTCTTGTGCTGAGGGA-AT--TTAAAGAC-ATTAAGC-TT-G-GCAGTGTGGT 521
| ||||||||||||| ||||| | || |||||| | | | || | | ||||||||
Sbjct 481 GGCAAGTGTCTTGTGTTGAGGCAGATGAAGAAAGACGA-TCCTCATTGGAGAAGTGTGGT 539
Query 522 TCATGTGTACGACATGGAAACTAACACTTGGAGAGTTTTAGGGGCCATATGTCAGCACGC 581
||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||
Sbjct 540 TCATGTGTACGACATGGAAGCTAACTGTTGGAGAGGGCTAGGGGCCATATGTCAGTATGC 599
Query 582 TACCGTCCAAAAATTGTATAAGATTACACCCTCTTTGTTCTTTGTCGAAGAGGATGATGA 641
|| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TATCGTCCACGACTTGTATAAGATTACGCCCTCTTTGTTCTTTGTCGAAGAGGATGATGA 659
Query 642 GAAGCACAAGGTCGTTGTAGCATCTAATGACCAACACATCTATCTAAACGCGGTTTTGGG 701
|||||| ||||| ||||||||||||||| |||||||||| || |||| | ||||||||||
Sbjct 660 GAAGCAAAAGGTAGTTGTAGCATCTAATCACCAACACATGTACCTAACCTCGGTTTTGGG 719
Query 702 TGTCATTGATTCAACCAACTATGGCGCCACTTACATCTTTTGCCAACCTTTGGTCTCTTC 761
| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 AGCCATTGATACCACCAACTATGGCGCCACTTACATCTTTTGCCAGCCTTTGGTCTCTTC 779
Query 762 AAGAGATTCTATGTCACCAGAAAATGAAGTGAATC-TGTCTAGAGAGCCATGTTACATTT 820
|||||||||||||||||| | |||||||||||| | ||| ||||||||||||||||||||
Sbjct 780 AAGAGATTCTATGTCACCGGGAAATGAAGTGAA-CTTGTTTAGAGAGCCATGTTACATTT 838
Query 821 TTGGCTCCTGCTCGGGCCTTCTCCTACTATATATTGGTGGCCTCTTTGTCGTAAATCCCC 880
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TTGGCTCCTGCTCCGGCCTTCTCCTACTATATATTGGTGGCCTCTTTGTCGTTAATCCCC 898
Query 881 TCACAAAGAGGTTTCGACTTTTTGAACACTCTGGCTCAAAGCTTCTGCCTATAATAGTTG 940
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 899 TCACAAAGAGGTTTCGACTTTTGGATCGCTCTGGCTCAAAGCTTCTGCCTATAATAGTTG 958
Query 941 GTGGTGATCGTAACGTTGCTGGTAGGGAAAGAGGGATGTGCGTCGGATTCACGGTAAATG 1000
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 959 GTGGTGATCGTAACGTTGCTGGTACGGAAAGAGCTATGTGCGTCGGTTTCACGGTAAATG 1018
Query 1001 GAAATCGAACAACTAAGAGATTCAAGATAGTCTGCATACATGAGATGGGAACGGTGTATT 1060
|||| ||||| ||||| ||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 1019 GAAACCGAACCACTAAAAGATTCAAGATTGTCTGCATACACGAGATGGAAACGGTGTACG 1078
Query 1061 CATTCGAGCTCAGCGATGGATATTCATGGAGATTATCGGAAACAACCGTCACCGCTAGCT 1120
|||||||| ||||||| |||||||| ||||||||||||||||| ||| ||||| |||||
Sbjct 1079 CATTCGAGATCAGCGACGGATATTCTTGGAGATTATCGGAAACGACCATCACCAATAGCT 1138
Query 1121 CAAAAAGTAATCTCACG 1137
|||||||| ||||||||
Sbjct 1139 CAAAAAGTGATCTCACG 1155
Score = 649 bits (351), Expect = 0.0
Identities = 463/517 (90%), Gaps = 8/517 (2%)
Strand=Plus/Plus
Query 1179 GTTGAGAAACGATGGGAGCATCATAACGTTCAATCCCGAGACAGAGCAAGCACGCTTGAT 1238
|||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1155 GTTGAGAAACGATGGGAGTATCATAGCGTTTAATCCCGAGACAGAGCAAGCACGCTTGAT 1214
Query 1239 TCCTTCCATATTTCATCAAGAACCAGAGATGAAATTGTTGTT-TGCAGCAGACAATAACA 1297
| ||||||||||||||||| |||||||||||||| |||| || || |||||| ||||
Sbjct 1215 TGCTTCCATATTTCATCAAAAACCAGAGATGAAACTGTT-TTCCGCTGCAGACGATAA-G 1272
Query 1298 TT-AATCGCTTGATCTTAATATCGGGGACGAAAGAAGAAATTTCAGTTTACACACTACTC 1356
|| |||||||||| |||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct 1273 TTGAATCGCTTGACCTTAATATCGGGGACGGGAGAAGAAATTACAGTTTATACACTACTC 1332
Query 1357 GACAATTCTGAATGGACCGTCACCAGCCAGATCAAGAACGTATCTATGAAGGAAAGTGAA 1416
|| ||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1333 GAAAATTCCAAATGGACCCTCGCCAGGCAGATCAAGAACGTATCTATGAAGGAAAGTGAA 1392
Query 1417 CTTGTATGCTGGAACATTGTTGTGTACGACGGCAAGCATCTAGTGGTGAGGGAGATGAAA 1476
|||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1393 CTTGTATGTTGGAACATTGTTGTGTACGATGGCAAGAATCTAGTGGTGAGGGAGATGAAG 1452
Query 1477 GATTCATTAAACGGTGTGGTTCATGTGTACGACATGGAAGTTAAAAGTTGGGAAGTTATA 1536
||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1453 GATAGATTAAAAGGTGTGGTTCATGTGTACGACATGGAGGTTAACAGTTGGGGAGTTATA 1512
Query 1537 GGGTCAACCAAATCTTGGTCCAGTCGCGTCCGAGACTTCTATAAATTTACACC-ATCCTT 1595
|||||||||| ||||||||||| |||||||| |||||||||||||||||| || | ||||
Sbjct 1513 GGGTCAACCACATCTTGGTCCACTCGCGTCCCAGACTTCTATAAATTTACGCCCA-CCTT 1571
Query 1596 GTTCTTTGTCGAGGAGGATGAGCAGCAGAAGGTGACAGTAGCTTCTAATGACAAACGCAT 1655
||||||||||||||| ||||||||||| |||||| ||||||| ||||||| ||| |
Sbjct 1572 GTTCTTTGTCGAGGAAGATGAGCAGCATAAGGTGGTTGTAGCTTATAATGACCAACATGT 1631
Query 1656 -TCCCTATCTAACTGCGATTATGGGACTCATTGATAC 1691
||| |||||||||||||||||||||||| |||||||
Sbjct 1632 GTCC-TATCTAACTGCGATTATGGGACTCGTTGATAC 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5