BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20260.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472256 jgi|Araly1|472256|fgenesh2_kg.1__2210__AT1G20260.2 2926 0.0
Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1 1882 0.0
> Ahg472256 jgi|Araly1|472256|fgenesh2_kg.1__2210__AT1G20260.2
Length=1872
Score = 2926 bits (1584), Expect = 0.0
Identities = 1759/1843 (95%), Gaps = 13/1843 (1%)
Strand=Plus/Plus
Query 79 TCTC-TCTCTTCTCTGCTTGAATCCATTACAGAGGGATTGTGGAGTGGTTTGGTTTGATT 137
|||| ||||| || | |||||||||||| |||||||||||||| | ||| ||||||
Sbjct 27 TCTCGTCTCTGCT-TAATTGAATCCATTAGAGAGGGATTGTGGA---G--TGGCTTGATT 80
Query 138 TGATTTCGATCTGTGACAATGGTGGAGACTAGTATCGACATGGAGGAAGGAACTCTCGAG 197
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 81 TGATATCGATCTGTGACAATGGTGGAGACTGGTATCGACATGGAGGAAGGAACTCTCGAG 140
Query 198 ATCGGAATGGAGTATAGAACTGTCTCCGGAGTTGCTGGACCTTTGGTCATCCTTGACAAA 257
||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 141 ATCGGAATGGAATATAGAACTGTCTCCGGGGTTGCGGGACCCTTGGTCATCCTTGACAAA 200
Query 258 GTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGA 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACCAGA 260
Query 318 CGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACA 320
Query 378 TCTGGGATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAAACGCCT 437
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 321 TCTGGAATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAGACGCCT 380
Query 438 GTGTCATTGGACATGCTTGGCCGCATATTTAACGGCTCGGGAAAGCCAATTGATAATGGC 497
|| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 381 GTTTCATTGGACATGCTTGGCCGTATATTTAACGGCTCAGGAAAGCCAATTGACAATGGC 440
Query 498 CCTCCTATTTTGCCAGAGGCATACCTTGATATTTCTGGAAGTTCAATCAACCCCAGTGAA 557
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 441 CCTCCTATTTTGCCAGAGGCATACCTTGATATTTCGGGTAGTTCAATCAACCCCAGTGAA 500
Query 558 AGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCC 560
Query 618 ATTGCTCGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAATGAGATT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 561 ATTGCTCGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAACGAGATT 620
Query 678 GCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAAAAGACTGAGAACTTA 737
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 621 GCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAGAAGACTGAGAACTTA 680
Query 738 ATTCAGGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAAC 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ATTCAGGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAAC 740
Query 798 ATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGATCGATGGAAAGGGTT 857
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 741 ATGGAGACAGCTCAGTTCTTCAAGCGCGATTTTGAAGAAAATGGATCGATGGAAAGAGTT 800
Query 858 ACCCTTTTCCTGAACTTGGCCAATGATCCAACCATTGAGAGAATTATCACTCCTCGAATT 917
||||||||| ||||| |||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 801 ACCCTTTTCTTGAACCTGGCTAATGACCCAACCATCGAGAGAATTATCACTCCTCGAATT 860
Query 918 GCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGGAAAGCATGTGCTTGTTATATTG 977
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 861 GCCCTTACAACCGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTGCTTGTTATATTG 920
Query 978 ACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTT 980
Query 1038 CCTGGAAGACGTGGATATCCGGGGTATATGTATACAGATCTTGCAACTATTTATGAACGC 1097
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 981 CCTGGAAGACGTGGATATCCAGGGTATATGTATACAGATCTTGCAACTATTTACGAACGT 1040
Query 1098 GCGGGACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCC 1157
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GCAGGACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCC 1100
Query 1158 AATGACGATATCACTCACCCTACTCCGGATCTTACTGGTTACATTACTGAGGGTCAGATA 1217
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1101 AATGATGATATCACCCACCCTACTCCGGATCTTACTGGTTACATCACTGAGGGTCAGATA 1160
Query 1218 TATATTGATAGGCAACTTCACAACAGACAGATATACCCACCCATTAACGTGCTTCCATCA 1277
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1161 TATATTGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCA 1220
Query 1278 CTTTCTCGGCTGATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGAT 1337
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CTTTCTCGATTAATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGAT 1280
Query 1338 GTGTCCAACCAGCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCT 1397
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1281 GTGTCCAACCAGCTATACGCAAATTATGCAATCGGGAAAGATGTTCAAGCCATGAAAGCT 1340
Query 1398 GTTGTTGGAGAAGAAGCTCTGTCTTCCGAGGATCTGCTGTATTTAGAGTTTCTGGATAAA 1457
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1341 GTTGTTGGAGAAGAAGCTCTTTCTTCTGAGGATCTGCTGTATTTGGAGTTTCTAGATAAA 1400
Query 1458 TTTGAAAGGAAGTTTGTGATGCAAGGCGCATACGATACAAGGAACATCTTCCAGTCGCTT 1517
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1401 TTTGAGAGGAAGTTTGTGATGCAAGGCGCATATGATACAAGAAACATCTTCCAGTCGCTT 1460
Query 1518 GACTTGGCATGGACACTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCC 1577
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GACTTGGCATGGACATTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCC 1520
Query 1578 AAAACACTTGATCAATTCTACAGCCGCGACTCCACAAGCTAAACCTTTTAAAACAAGCTC 1637
|||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||
Sbjct 1521 AAAACACTTGATCAATTCTACAGCCGTGACTCCACAAGCTAAGCCTTTTGAAACAACCTC 1580
Query 1638 TATGTTGCTCCATTCTTATCTTATTTGGAACTTAAATCATACCGAGAGAAGACAAACAGG 1697
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1581 TATGTTGCTCCATTCTTATCTTATTTGGAACTTAAATCATATCGAGAGAAGACAAACATG 1640
Query 1698 ATTGGTTGCGTGAAAACAAAACTCAGAGAATTGTGAAGTTGGGAATTTTCTTTTGTTTT- 1756
|||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1641 ATTGATTGCGTGAAAACAAAACTCAGAGAATTGCGAA-TGGGGAATTTTCTTTTGTTTTA 1699
Query 1757 TCCATTTGTATAATAAAGGTTTGTGTAGAGAAACTTCGTACAAAATCTATTTATAAACCA 1816
|| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1700 TC-ATTTGTACAATAAAGGTTTGTGTAGGGAGACTTCGTACAAAATCTATTTATAAACCA 1758
Query 1817 CTTCAGCTCCTGTCTTCCAAACTGGTGAATCATGTCTTTTTTGTTGTGGTGTAATAATAA 1876
|||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1759 CTTCTGCTCCTGTCTTCGAAACTGGTGAATCATGTCTTTTT-GTTGTTGTGTAATAATAA 1817
Query 1877 TCTCTTCCAACACTTTTAAATATATGTACACCATTGTTTGTGC 1919
|||||||| ||||||||| || |||| |||||||||||||||
Sbjct 1818 TCTCTTCCCACACTTTTATATTTATG--CACCATTGTTTGTGC 1858
> Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1
Length=1849
Score = 1882 bits (1019), Expect = 0.0
Identities = 1336/1490 (90%), Gaps = 17/1490 (1%)
Strand=Plus/Plus
Query 127 TTGGTTTGATTTGAT-TTCGATCTGTGACAATGGTGGAGACTAG-TATCGACATGGAGGA 184
||| |||| ||| || || ||||||||| ||||| || || | | | ||||||| || ||
Sbjct 100 TTGATTTGGTTT-ATCTTTGATCTGTGAAAATGGGGGCGAAT-GATCTCGACATCGAAGA 157
Query 185 AGGAACTCTCGAGATCGGAATGGAGTATAGAACTGTCTCCGGAGTTGCTGGACCTTTGGT 244
||| ||||| |||||||| ||||||||||||||||| || || ||||||||||| |||||
Sbjct 158 AGGGACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGT 217
Query 245 CATCCTTGACAAAGTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGA 304
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 218 CATTCTTGATAAAGTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGTTTAGGAGA 277
Query 305 TGGATCAACGAGACGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGT 364
|||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| |||||
Sbjct 278 TGGATCAACGAGACGTGGCCAGGTTTTGGAAGTTGACGGAGAGAAAGCAGTTGTGCAGGT 337
Query 365 TTTTGAAGGAACATCTGGGATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGT 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TTTTGAAGGAACATCTGGAATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGT 397
Query 425 ACTGAAAACGCCTGTGTCATTGGACATGCTTGGCCGCATATTTAACGGCTCGGGAAAGCC 484
||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 398 TTTGAAAACTCCTGTGTCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCC 457
Query 485 AATTGATAATGGCCCTCCTATTTTGCCAGAGGCATACCTTGATATTTCTGGAAGTTCAAT 544
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 458 GATTGATAATGGCCCTCCTATTTTGCCAGAGGCATACCTTGATATCTCAGGAAGTTCAAT 517
Query 545 CAACCCCAGTGAAAGAACCTA-CCCTGAAGAGATGATACAAACGGGGATTTCTACCATTG 603
||||||||||||||||||||| ||| |||||||||||||| || || ||||| ||||| |
Sbjct 518 CAACCCCAGTGAAAGAACCTATCCC-GAAGAGATGATACAGACAGGAATTTCCACCATCG 576
Query 604 ATGTCATGAACTCCATTGCTCGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTAC 663
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 577 ATGTCATGAATTCCATTGCTCGTGGACAGAAGATTCCGCTTTTCTCTGCTGCTGGTCTTC 636
Query 664 CTCATAATGAGATTGCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAAA 723
| |||||||| || |||||||| ||||||||||||||||| ||||| || || |||||||
Sbjct 637 CACATAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTCAAACGTTTGGAAA 696
Query 724 AGACTGA-GAACTTAATTCAGGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCA 782
|||||| || || | || | ||||||||||||||||||||||||||||||| ||||||
Sbjct 697 AGACTGTTGATCT-ACTT--G-AGGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCA 752
Query 783 GCTATGGGTGTAAACATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGA 842
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 753 GCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGA 812
Query 843 TCGATGGAAAGGGTTACCCTTTTCCTGAACTTGGCCAATGATCCAACCATTGAGAGAATT 902
|| ||||| || ||||| |||||||||||| |||||||||| ||||| |||||||||||
Sbjct 813 TCAATGGAGAGAGTTACTCTTTTCCTGAACCTGGCCAATGACCCAACGATTGAGAGAATC 872
Query 903 ATCACTCCTCGAATTGCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGG-AAAGCA 961
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| ||
Sbjct 873 ATCACTCCTCGAATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAA-CA 931
Query 962 TGTGCTTGTTATATTGACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGC 1021
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 932 CGTCCTTGTTATATTGACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCCGC 991
Query 1022 TGCTCGAGAAGAAGTTCCTGGAAGACGTGGATATCCGGGGTATATGTATACAGATCTTGC 1081
||| |||||||| ||||| ||||||||||||||||| || |||||||| || ||||||||
Sbjct 992 TGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATATGTACACTGATCTTGC 1051
Query 1082 AACTATTTATGAACGCGC-GGGACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCC 1140
||||||||||||||| || ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 1052 AACTATTTATGAACGTGCTGGG-CGTATTGAAGGAAGAAAAGGTTCCATCACCCAAATCC 1110
Query 1141 CTATCCTGACTATGCCCAATGACGATATCACTCACCCTACTCCGGATCTTACTGGTTACA 1200
| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1111 CAATCCTCACTATGCCCAATGACGACATCACTCATCCAACTCCGGATCTTACTGGTTACA 1170
Query 1201 TTACTGAGGGTCAGATATATATTGATAGGCAACTTCACAACAGACAGATATACCCACCCA 1260
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1171 TTACTGAAGGTCAGATATATATCGATAGGCAACTGCACAACAGACAGATATATCCACCCA 1230
Query 1261 TTAACGTGCTTCCATCACTTTCTCGGCTGATGAAGAGTGCTATTGGTGAAGGAATGACTC 1320
| |||||||||||||| |||||||| | ||||||||||||||||| || || |||||||
Sbjct 1231 TCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGAGTGCTATTGGCGAGGGCATGACTC 1290
Query 1321 GCAAAGACCATTCTGATGTGTCCAACCAGCTATACGCAAATTATGCAATCGGAAAAGATG 1380
| ||||| ||||| |||||||| |||||||| || || |||||||||||||| |||||||
Sbjct 1291 GTAAAGATCATTCAGATGTGTCGAACCAGCTGTATGCGAATTATGCAATCGGGAAAGATG 1350
Query 1381 TTCAAGCCATGAAAGCTGTTGTTGGAGAAGAAGCTCTGTCTTCCGAGGATCTGCTGTATT 1440
||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 1351 TTCAAGCGATGAAAGCTGTTGTTGGAGAAGAAGCACTTTCTTCAGAGGATCTGCTTTATC 1410
Query 1441 TAGAGTTTCTGGATAAATTTGAAAGGAAGTTTGTGATGCAAGGCGCATACGATACAAGGA 1500
|||||||| ||||||| ||||| ||||||||||| |||||||| || || || ||| | |
Sbjct 1411 TAGAGTTTTTGGATAAGTTTGAGAGGAAGTTTGTAATGCAAGGAGCTTATGACACACGCA 1470
Query 1501 ACATCTTCCAGTCGCTTGACTTGGCATGGACACTGCTCCGTATCTTCCCACGTGAGCTTC 1560
|||| || |||||||| || || || |||||| ||||||||||||||||||| |||||||
Sbjct 1471 ACATTTTTCAGTCGCTGGATTTAGCTTGGACATTGCTCCGTATCTTCCCACGGGAGCTTC 1530
Query 1561 TTCACCGTATTCCTGCCAAA-ACACTTGATCAATTCTACAGCCGCGACTC 1609
|||||||||| ||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1531 TTCACCGTATCCCTGC-AAAGACACTTGACCAATTCTACAGCCGCGACTC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5