BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20270.1 Length=1339 Score E Sequences producing significant alignments: (Bits) Value Ahg472257 jgi|Araly1|472257|fgenesh2_kg.1__2211__AT1G20270.1 1945 0.0 > Ahg472257 jgi|Araly1|472257|fgenesh2_kg.1__2211__AT1G20270.1 Length=1236 Score = 1945 bits (1053), Expect = 0.0 Identities = 1159/1209 (96%), Gaps = 11/1209 (1%) Strand=Plus/Plus Query 125 TCTCGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 184 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32 TCTAGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 91 Query 185 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 151 Query 245 TTTTGGCTTTCGGAGTTTTCTCTCTTCCTATTAACAACGATGAATCCTCTCCTATCGATC 304 |||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 152 TTTTGGCTTTTGGGGTTTTCTCTCTTCCTATTAACAACGATGAATCTTCTCCGATCGATC 211 Query 305 TCTCTTATTTCCGACGAGCTGCCACTGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 364 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 212 TCTCTTATTTCCGACGAGCTGCTACCGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 271 Query 365 AGTGGACTGAAGTGCTTTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 424 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 AGTGGACTGAAGTGCTCTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 331 Query 425 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 391 Query 485 TAGATAGCGAAACCGGCAAGAGCAAAGATAGCAGGGTGCGAACAAGCTCAGGGACTTTCC 544 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 392 TAGATAGCGAAACTGGCAAGAGCAAAGATAGCAGGGTGCGGACAAGTTCAGGGACTTTCC 451 Query 545 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCAGATTACACCT 604 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 452 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCTGATTACACCT 511 Query 605 TTATTCCTGCAGATCATGGTGAAGGACTTCAAGTTCTTCACTACGAAGCAGGGCAAAAGT 664 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 512 TTATTCCTGCAGATCATGGTGAAGGACTTCAAATTCTTCACTACGAAGCAGGGCAAAAGT 571 Query 665 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAAAATGGAGGTCAACGGA 724 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 572 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAGAATGGAGGTCAACGGA 631 Query 725 TGGCTACAATGCTTATGTATCTGTCGGATGTTGAGGAAGGCGGTGAAACAGTGTTTCCTG 784 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 632 TGGCTACAATGCTTATGTATCTGTCCGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTG 691 Query 785 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 751 Query 845 AGGGACTTTCCGTAAAGCCGAGAATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCTG 904 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 752 AGGGACTTTCCGTAAAGCCGAGAATGGGCGATGCATTGCTTTTCTGGAGCATGAGGCCTG 811 Query 905 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 871 Query 965 GGTCATCTACCAAATGGATGCATGTTGGCGAGTACAAAATCTAGCGTGTTTGGTTTCTGG 1024 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| Sbjct 872 GGTCATCTACCAAATGGATGCATGTCGGCGAGTACAAAATCTAGCGTTTTTGGTTGCTGG 931 Query 1025 ACAGTAAACTGTTTCCTTTCATGGTGGATGGGATGCAAAGTTGGAACTAGAAATTACAGA 1084 ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 932 ACAGTAAACTGTTTCCTTTCATGGTGGATGGAATGCAATGTTGGAACTAGAAGTTACAGA 991 Query 1085 GAGTTGATGTTTGTTTTTTCCCTGCGGCTCGGTGCATTCCTT-GCTTTGATGGGATTCAA 1143 ||||||||| |||||||||||||||||||| || |||||||| | | | |||||||||| Sbjct 992 GAGTTGATGCTTGTTTTTTCCCTGCGGCTCAGTACATTCCTTTGATGAG-TGGGATTCAA 1050 Query 1144 GGTTTATC-AT--T-AGAGAATACCAAAAGATAGAGATTTTGTTAGAGTAAATTAGGATG 1199 ||||||| || | ||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1051 GGTTTATATATCATCAGAGAATACCAAAAGATAGGGATTTTGTTAGAGTACATTAGGATG 1110 Query 1200 GCTTAGAGTGACTCTTACTCATTGGTATAC-CCATAAAGGTCTTGTGTCTTTGAACAAGA 1258 ||||||||||||| || ||||||||||||| || ||||||||||||||||||||||| || Sbjct 1111 GCTTAGAGTGACTGTTGCTCATTGGTATACACC-TAAAGGTCTTGTGTCTTTGAACA-GA 1168 Query 1259 -GTTGTGAATTACATAGTTTTGTGGTATTCTTTTGTTTTGTTTGTGATTAGAAACATAAT 1317 |||||| ||||| |||||||||||| || |||| |||| |||||||||||||||||||| Sbjct 1169 AGTTGTGTATTACTTAGTTTTGTGGTGTTTTTTTCTTTT-TTTGTGATTAGAAACATAAT 1227 Query 1318 CAAATTAAA 1326 ||||||||| Sbjct 1228 CAAATTAAA 1236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50093512938 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5