BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20270.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472257 jgi|Araly1|472257|fgenesh2_kg.1__2211__AT1G20270.1 1945 0.0
> Ahg472257 jgi|Araly1|472257|fgenesh2_kg.1__2211__AT1G20270.1
Length=1236
Score = 1945 bits (1053), Expect = 0.0
Identities = 1159/1209 (96%), Gaps = 11/1209 (1%)
Strand=Plus/Plus
Query 125 TCTCGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 TCTAGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 91
Query 185 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 151
Query 245 TTTTGGCTTTCGGAGTTTTCTCTCTTCCTATTAACAACGATGAATCCTCTCCTATCGATC 304
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 152 TTTTGGCTTTTGGGGTTTTCTCTCTTCCTATTAACAACGATGAATCTTCTCCGATCGATC 211
Query 305 TCTCTTATTTCCGACGAGCTGCCACTGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 364
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 212 TCTCTTATTTCCGACGAGCTGCTACCGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 271
Query 365 AGTGGACTGAAGTGCTTTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 AGTGGACTGAAGTGCTCTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 331
Query 425 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 391
Query 485 TAGATAGCGAAACCGGCAAGAGCAAAGATAGCAGGGTGCGAACAAGCTCAGGGACTTTCC 544
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 392 TAGATAGCGAAACTGGCAAGAGCAAAGATAGCAGGGTGCGGACAAGTTCAGGGACTTTCC 451
Query 545 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCAGATTACACCT 604
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 452 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCTGATTACACCT 511
Query 605 TTATTCCTGCAGATCATGGTGAAGGACTTCAAGTTCTTCACTACGAAGCAGGGCAAAAGT 664
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 512 TTATTCCTGCAGATCATGGTGAAGGACTTCAAATTCTTCACTACGAAGCAGGGCAAAAGT 571
Query 665 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAAAATGGAGGTCAACGGA 724
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 572 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAGAATGGAGGTCAACGGA 631
Query 725 TGGCTACAATGCTTATGTATCTGTCGGATGTTGAGGAAGGCGGTGAAACAGTGTTTCCTG 784
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 632 TGGCTACAATGCTTATGTATCTGTCCGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTG 691
Query 785 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 751
Query 845 AGGGACTTTCCGTAAAGCCGAGAATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCTG 904
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 752 AGGGACTTTCCGTAAAGCCGAGAATGGGCGATGCATTGCTTTTCTGGAGCATGAGGCCTG 811
Query 905 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 871
Query 965 GGTCATCTACCAAATGGATGCATGTTGGCGAGTACAAAATCTAGCGTGTTTGGTTTCTGG 1024
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 872 GGTCATCTACCAAATGGATGCATGTCGGCGAGTACAAAATCTAGCGTTTTTGGTTGCTGG 931
Query 1025 ACAGTAAACTGTTTCCTTTCATGGTGGATGGGATGCAAAGTTGGAACTAGAAATTACAGA 1084
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 932 ACAGTAAACTGTTTCCTTTCATGGTGGATGGAATGCAATGTTGGAACTAGAAGTTACAGA 991
Query 1085 GAGTTGATGTTTGTTTTTTCCCTGCGGCTCGGTGCATTCCTT-GCTTTGATGGGATTCAA 1143
||||||||| |||||||||||||||||||| || |||||||| | | | ||||||||||
Sbjct 992 GAGTTGATGCTTGTTTTTTCCCTGCGGCTCAGTACATTCCTTTGATGAG-TGGGATTCAA 1050
Query 1144 GGTTTATC-AT--T-AGAGAATACCAAAAGATAGAGATTTTGTTAGAGTAAATTAGGATG 1199
||||||| || | ||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1051 GGTTTATATATCATCAGAGAATACCAAAAGATAGGGATTTTGTTAGAGTACATTAGGATG 1110
Query 1200 GCTTAGAGTGACTCTTACTCATTGGTATAC-CCATAAAGGTCTTGTGTCTTTGAACAAGA 1258
||||||||||||| || ||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1111 GCTTAGAGTGACTGTTGCTCATTGGTATACACC-TAAAGGTCTTGTGTCTTTGAACA-GA 1168
Query 1259 -GTTGTGAATTACATAGTTTTGTGGTATTCTTTTGTTTTGTTTGTGATTAGAAACATAAT 1317
|||||| ||||| |||||||||||| || |||| |||| ||||||||||||||||||||
Sbjct 1169 AGTTGTGTATTACTTAGTTTTGTGGTGTTTTTTTCTTTT-TTTGTGATTAGAAACATAAT 1227
Query 1318 CAAATTAAA 1326
|||||||||
Sbjct 1228 CAAATTAAA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5