BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20300.1 Length=1907 Score E Sequences producing significant alignments: (Bits) Value Ahg472258 jgi|Araly1|472258|fgenesh2_kg.1__2212__AT1G20300.1 2656 0.0 > Ahg472258 jgi|Araly1|472258|fgenesh2_kg.1__2212__AT1G20300.1 Length=1837 Score = 2656 bits (1438), Expect = 0.0 Identities = 1610/1694 (95%), Gaps = 8/1694 (0%) Strand=Plus/Plus Query 1 CTTCGTCCTTCTTCACCATCGCCACTCTGCTCCGTTCTACATTTAGAAGAGACTGACCAA 60 |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1 CTTCCTCCTTCTTCACCATCGCCACTCTGCTCCGTTCGACATTTAGAAGAGAGTGACCAA 60 Query 61 AATCTCCCATTAATGGCGTTACTCCGATCAAAACTCCATCTTTCTCGAACCCTTTCCTTC 120 ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 61 AATCTTCCATTAATGGCGTTACTCCGGTCAAAATTCCATCTTTCTCGAACCCTTTACTTC 120 Query 121 ATCTCTCCTCTTCTACCCAAAA-CCTTCTCCACCTCGGCAACTTCTCTACTCAGTGACCA 179 |||||||||| |||| |||||| ||||||||||||| |||||||||||||||| |||||| Sbjct 121 ATCTCTCCTCGTCTA-CCAAAACCCTTCTCCACCTCCGCAACTTCTCTACTCAATGACCA 179 Query 180 TGAAAACGACGAATCCGCCGCCACCATAACCGCCGCCGTCTCTGTCCCAATCTCACCTCT 239 ||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| |||| Sbjct 180 TGAAAACGACGAATCCGCCGCCACCGTAACCGGCGTCGTCTCTGTCCCAGTCTCATCTCT 239 Query 240 GTTAACTCCGGAAGACACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GTTAACTCCAGAAGATACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299 Query 300 TCGCAAAAACCCTACAAGCCCCAACGACGCCATCTTAAACCCTAGCTTAACTC-TCCATG 358 ||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| || Sbjct 300 TCGCAAAAACCCTACAAACCCCAACGACGCCGTCTTAAACCCTAGCTTAACCCTTCC-TG 358 Query 359 CTCTCTCCCTCGATTTCTCCCAAATTGAA-ACTTC-CCAAGTCTCTCCCTCCGTCGTCCG 416 |||||||||||||||||||||||| | || |||| | || |||||||||| |||||||| Sbjct 359 CTCTCTCCCTCGATTTCTCCCAAA-TCAACGCTTCTCGAA-TCTCTCCCTCTGTCGTCCG 416 Query 417 ATGCGTGATAGAGAAGTGCGGCAGTGTCCGCCACGGAATCCCTCTTCACCAATCTCTAGC 476 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 417 ATGCGTGATAGAGAAGTGTGGCAGTGTCCGCCATGGAATCCCTCTTCACCAATCTCTAGC 476 Query 477 TTTCTTCAATTGGGCAACTTCACGAGACGATTACGACCACAAATCACCTCATCCTTACAA 536 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 477 TTTCTTCAATTGGGCCACTTCACGAGACGATTACGACCAAAAATCGCCTCATCCTTACAA 536 Query 537 CGAAATGATCGATCTTTCAGGAAAGGTTAGACAATTCGACTTAGCTTGGCATTTGATTGA 596 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 537 CGAAATGATCGATCTTGCAGGAAAGGTTAGACAATTTGACTTAGCTTGGCATTTGATTGA 596 Query 597 TCTAATGAAATCCAGAAACGTAGAGATTTCGATTGAAACCTTCACGATTTTGATTAGACG 656 ||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 597 TCTCATGAAATCGAGAAACGTCGAGATTTCGATTGAGACCTTCACGATTTTGATTAGACG 656 Query 657 TTATGTTAGAGCTGGATTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TTATGTTAGAGCTGGTTTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716 Query 717 CGGTTGCGTACCTGATAAAATCGCGTTTTCCATAGTTATTAGTAACCTTTCTAGGAAGAG 776 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 717 CGGTTGCGTTCCTGATAAAATCGCGTTTTCGATAGTTATTAGTAACCTTTCTAGAAAGAG 776 Query 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGATTCGAGCCTGATGT 836 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGGTTCGAGCCTGATGT 836 Query 837 TATAGTTTACACCAATTTGGTTCGTGGTTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 837 TATAGTTTACACCAATTTGGTTCGTGGGTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896 Query 897 GAAAGTGTTCAAGGAGATGAAGTTGGCTGGGATTGAACCTAATGTGTATACTTACAGTAT 956 ||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| || Sbjct 897 GAAAGTGTTCAAGGAGATGAAATTGGCTGGGATTGAACCGAATGTGTACACTTACAGCAT 956 Query 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGTGCGCATGATGTGTTTGCGGA 1016 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGCGCGCATGATGTTTTTGCTGA 1016 Query 1017 TATGTTAGATTCAGGTTGTGCGCCGAATGCGATTACTTTTAACAACTTGATGAGGGTTCA 1076 |||||||||||| |||||||| || |||||||||||||| || ||||||||||||||||| Sbjct 1017 TATGTTAGATTCGGGTTGTGCTCCAAATGCGATTACTTTCAATAACTTGATGAGGGTTCA 1076 Query 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136 Query 1137 ATGTGAGCCTGATACTATTACTTATAACTTCCTTATTGAGGCTCATTGCAGAGACGAGAA 1196 ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1137 ATGCGAGCCTGATACTATTACTTATAACTTCCTCATTGAGACTCATTGCAGAGACGAGAA 1196 Query 1197 TCTGGAAAACGCGGTCAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256 ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TCTTGAAAATGCGGTGAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256 Query 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCTCA 1316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCCCA 1316 Query 1317 TAGGATGTATTCGAAGATGATGGAAGCGAAATGTGAGCCGAATACGGTGACTTATAATAT 1376 ||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||| Sbjct 1317 TAGGATGTATTCGAAAATGATGGAAGCAAAATGTGAGCAGAATACAGTGACTTATAATAT 1376 Query 1377 ACTGATGAGGATGTTTGTCGGGTCAAAATCTACTGATATGGTTCTGAAGATGAAGAAAGA 1436 ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| || Sbjct 1377 TCTGATAAGGATGTTTGCCGGGTCGAAATCTACTGATATGGTTCTGAAGATGAAGAAGGA 1436 Query 1437 GATGGATGATAAAGAAGTTGAGCCGAATGTGAATACTTATAGGCTTTTGGTTACGATGTT 1496 ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| Sbjct 1437 AATGGATGATAAAGAAGTTGAGCCAAATGTGAATACCTATAGGCTTCTGGTTACGATGTT 1496 Query 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556 Query 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAGAGCTGG 1616 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAAAGCTGG 1616 Query 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTGCTCG 1676 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTACTCG 1676 Query 1677 GCCATTGTAGGAAC 1690 |||||| ||||||| Sbjct 1677 GCCATTATAGGAAC 1690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71647750845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5