BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20300.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472258 jgi|Araly1|472258|fgenesh2_kg.1__2212__AT1G20300.1 2656 0.0
> Ahg472258 jgi|Araly1|472258|fgenesh2_kg.1__2212__AT1G20300.1
Length=1837
Score = 2656 bits (1438), Expect = 0.0
Identities = 1610/1694 (95%), Gaps = 8/1694 (0%)
Strand=Plus/Plus
Query 1 CTTCGTCCTTCTTCACCATCGCCACTCTGCTCCGTTCTACATTTAGAAGAGACTGACCAA 60
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1 CTTCCTCCTTCTTCACCATCGCCACTCTGCTCCGTTCGACATTTAGAAGAGAGTGACCAA 60
Query 61 AATCTCCCATTAATGGCGTTACTCCGATCAAAACTCCATCTTTCTCGAACCCTTTCCTTC 120
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 61 AATCTTCCATTAATGGCGTTACTCCGGTCAAAATTCCATCTTTCTCGAACCCTTTACTTC 120
Query 121 ATCTCTCCTCTTCTACCCAAAA-CCTTCTCCACCTCGGCAACTTCTCTACTCAGTGACCA 179
|||||||||| |||| |||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 121 ATCTCTCCTCGTCTA-CCAAAACCCTTCTCCACCTCCGCAACTTCTCTACTCAATGACCA 179
Query 180 TGAAAACGACGAATCCGCCGCCACCATAACCGCCGCCGTCTCTGTCCCAATCTCACCTCT 239
||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| ||||
Sbjct 180 TGAAAACGACGAATCCGCCGCCACCGTAACCGGCGTCGTCTCTGTCCCAGTCTCATCTCT 239
Query 240 GTTAACTCCGGAAGACACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTAACTCCAGAAGATACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299
Query 300 TCGCAAAAACCCTACAAGCCCCAACGACGCCATCTTAAACCCTAGCTTAACTC-TCCATG 358
||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||
Sbjct 300 TCGCAAAAACCCTACAAACCCCAACGACGCCGTCTTAAACCCTAGCTTAACCCTTCC-TG 358
Query 359 CTCTCTCCCTCGATTTCTCCCAAATTGAA-ACTTC-CCAAGTCTCTCCCTCCGTCGTCCG 416
|||||||||||||||||||||||| | || |||| | || |||||||||| ||||||||
Sbjct 359 CTCTCTCCCTCGATTTCTCCCAAA-TCAACGCTTCTCGAA-TCTCTCCCTCTGTCGTCCG 416
Query 417 ATGCGTGATAGAGAAGTGCGGCAGTGTCCGCCACGGAATCCCTCTTCACCAATCTCTAGC 476
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 ATGCGTGATAGAGAAGTGTGGCAGTGTCCGCCATGGAATCCCTCTTCACCAATCTCTAGC 476
Query 477 TTTCTTCAATTGGGCAACTTCACGAGACGATTACGACCACAAATCACCTCATCCTTACAA 536
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 477 TTTCTTCAATTGGGCCACTTCACGAGACGATTACGACCAAAAATCGCCTCATCCTTACAA 536
Query 537 CGAAATGATCGATCTTTCAGGAAAGGTTAGACAATTCGACTTAGCTTGGCATTTGATTGA 596
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 CGAAATGATCGATCTTGCAGGAAAGGTTAGACAATTTGACTTAGCTTGGCATTTGATTGA 596
Query 597 TCTAATGAAATCCAGAAACGTAGAGATTTCGATTGAAACCTTCACGATTTTGATTAGACG 656
||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 597 TCTCATGAAATCGAGAAACGTCGAGATTTCGATTGAGACCTTCACGATTTTGATTAGACG 656
Query 657 TTATGTTAGAGCTGGATTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTATGTTAGAGCTGGTTTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716
Query 717 CGGTTGCGTACCTGATAAAATCGCGTTTTCCATAGTTATTAGTAACCTTTCTAGGAAGAG 776
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 717 CGGTTGCGTTCCTGATAAAATCGCGTTTTCGATAGTTATTAGTAACCTTTCTAGAAAGAG 776
Query 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGATTCGAGCCTGATGT 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGGTTCGAGCCTGATGT 836
Query 837 TATAGTTTACACCAATTTGGTTCGTGGTTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 TATAGTTTACACCAATTTGGTTCGTGGGTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896
Query 897 GAAAGTGTTCAAGGAGATGAAGTTGGCTGGGATTGAACCTAATGTGTATACTTACAGTAT 956
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 897 GAAAGTGTTCAAGGAGATGAAATTGGCTGGGATTGAACCGAATGTGTACACTTACAGCAT 956
Query 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGTGCGCATGATGTGTTTGCGGA 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGCGCGCATGATGTTTTTGCTGA 1016
Query 1017 TATGTTAGATTCAGGTTGTGCGCCGAATGCGATTACTTTTAACAACTTGATGAGGGTTCA 1076
|||||||||||| |||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1017 TATGTTAGATTCGGGTTGTGCTCCAAATGCGATTACTTTCAATAACTTGATGAGGGTTCA 1076
Query 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136
Query 1137 ATGTGAGCCTGATACTATTACTTATAACTTCCTTATTGAGGCTCATTGCAGAGACGAGAA 1196
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1137 ATGCGAGCCTGATACTATTACTTATAACTTCCTCATTGAGACTCATTGCAGAGACGAGAA 1196
Query 1197 TCTGGAAAACGCGGTCAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTTGAAAATGCGGTGAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256
Query 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCTCA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCCCA 1316
Query 1317 TAGGATGTATTCGAAGATGATGGAAGCGAAATGTGAGCCGAATACGGTGACTTATAATAT 1376
||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1317 TAGGATGTATTCGAAAATGATGGAAGCAAAATGTGAGCAGAATACAGTGACTTATAATAT 1376
Query 1377 ACTGATGAGGATGTTTGTCGGGTCAAAATCTACTGATATGGTTCTGAAGATGAAGAAAGA 1436
||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1377 TCTGATAAGGATGTTTGCCGGGTCGAAATCTACTGATATGGTTCTGAAGATGAAGAAGGA 1436
Query 1437 GATGGATGATAAAGAAGTTGAGCCGAATGTGAATACTTATAGGCTTTTGGTTACGATGTT 1496
||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1437 AATGGATGATAAAGAAGTTGAGCCAAATGTGAATACCTATAGGCTTCTGGTTACGATGTT 1496
Query 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556
Query 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAGAGCTGG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAAAGCTGG 1616
Query 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTGCTCG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTACTCG 1676
Query 1677 GCCATTGTAGGAAC 1690
|||||| |||||||
Sbjct 1677 GCCATTATAGGAAC 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5