BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20310.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg472259 jgi|Araly1|472259|fgenesh2_kg.1__2213__AT1G20310.1 1216 0.0 > Ahg472259 jgi|Araly1|472259|fgenesh2_kg.1__2213__AT1G20310.1 Length=898 Score = 1216 bits (658), Expect = 0.0 Identities = 834/914 (91%), Gaps = 32/914 (4%) Strand=Plus/Plus Query 11 AAGAATAAATGGAAAAAGCTTCAAACAGCAACAAGTCCACGAAATTCTCGAAAATGCTTC 70 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 4 AAGAATAAATGGAAAAAGCTTCAAACAACAACAAGTCCGCGAAGTTCTCGAAAATGCTTC 63 Query 71 AAAGAGCGATGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCACGGAGAGATTTTCATC 130 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 64 AAAGAGCTTTGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCAGGGAGAGATTTTCATC 123 Query 131 AGCACCGTACGACTTCGACGGCGAACAGAGGA-ATCTTCTTCTCCAGTCCGTTGGTTCCT 189 || ||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 124 AGTACCGTACGACTTCGACGGCGAACAGAGGATAT-TTCTTCTCTAGTCCGTTGGTTCCC 182 Query 190 ACGGCTGCTAGAGTTAGGAGAAATA-CAAAATACGAAGCCGTTTTTGCCGAACCCACTTC 248 ||||| ||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct 183 ACGGCGGCTAGAGTTCGGAGAAGTACCAAAA-ACGAAGCCGTTTTTGCCGAACCCACTTC 241 Query 249 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTCGCTAGACCTAAATGTCCGGAGAAGAA 308 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 242 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTGGCTAAACCTAAATGTCCGGAGAAGAA 301 Query 309 GAA-CAAAGCACCTAAGAATCTCAAAACGGCATCGTCTTTATCGTCTTGTGTTATTAAAG 367 || |||||||||||||||||||||||| || ||||||||||| ||||||||||||| || Sbjct 302 -AATCAAAGCACCTAAGAATCTCAAAACAGCCTCGTCTTTATCATCTTGTGTTATTAGAG 360 Query 368 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTATCTTCTCAATGAGAAGTTATCCGT 427 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 361 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTCTCTTCTCAACGAGAAGTTATCCGT 420 Query 428 CGAGAAAATCCAACTCCACTGCCTTCGCAGCCGCCGCAGCGAGAGAACATCCAATCGCGG 487 || |||||||||||||||| | || | || ||||||||||||||| |||||| Sbjct 421 CGGGAAAATCCAACTCCAC--C----GC--C-GC---AGCGAGAGAACATCCGGTCGCGG 468 Query 488 AGGTTGATGCGGTTACGGCAGCGCCTTCATTGGGTGCAATGAAGAAATTCGCGAGCAGTA 547 |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 469 CGGTTGAAGCGGTCACGGCAGCGCCTTCATTGGGTAAAATGAAGAAATTCGCGAGCAGTA 528 Query 548 GAGAAGCTCTCGGTGGATTTGATTGGACGGTCCAGATGAAACGTGA-GAAAGAAGATGTA 606 ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||| Sbjct 529 GAGAAGCTCTCGGTGGATTCGATTGGACGGTCCAGATGAAACGTGACGAA-GAAGAAGTA 587 Query 607 ATGATTCCATGCTCTGTGGGTATACCTCTAACTCAGCTAGAGGATTTGAGTTTGTGTCCG 666 | |||||||||||||||| |||| ||||| ||||||||||||| ||||||||| |||||| Sbjct 588 ACGATTCCATGCTCTGTGAGTATGCCTCTGACTCAGCTAGAGGGTTTGAGTTTATGTCCG 647 Query 667 -AAGCCAAAGAGTGAAGTTAATTTGTGGAAGAGAAGAACCATGGATCGACCAAAACCACT 725 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 648 CAA-CCAAAGAGTGAAGTTAATTTGTGGAGGAGAAGAACCATGGATCGACCAAAACCACT 706 Query 726 TCAAGTAATTAAGTAAAA-GCTCCTTCTTGAATTTTCTTCGTTGCCTTTTCTATGTCCAT 784 ||||||||| |||||||| ||| || ||||||||||||||||||| ||||| |||| || Sbjct 707 TCAAGTAATGAAGTAAAAAGCTACTGCTTGAATTTTCTTCGTTGC-TTTTCAATGTATAT 765 Query 785 TTGTTTTATGTGTCGGAATTTCGTGGCTGCCACGATG-CTACGTTACTACGTA---CTAA 840 ||| ||||||||||||||||||||| ||||||||||| | ||||||||||||| |||| Sbjct 766 TTGCTTTATGTGTCGGAATTTCGTGTCTGCCACGATGAC-ACGTTACTACGTAATACTAA 824 Query 841 GTCTGAGTTTTGTGAATAGACTGAAA--AA-GACAGAAATAATTCAACGTGTGAATAGAT 897 ||||||||||||||||||||| |||| || |||| ||||||||||| |||||||||||| Sbjct 825 GTCTGAGTTTTGTGAATAGACAGAAATTAAAGACATAAATAATTCAAAGTGTGAATAGAT 884 Query 898 CAAAACGttttttt 911 |||||||||||||| Sbjct 885 CAAAACGTTTTTTT 898 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5