BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20310.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472259 jgi|Araly1|472259|fgenesh2_kg.1__2213__AT1G20310.1 1216 0.0
> Ahg472259 jgi|Araly1|472259|fgenesh2_kg.1__2213__AT1G20310.1
Length=898
Score = 1216 bits (658), Expect = 0.0
Identities = 834/914 (91%), Gaps = 32/914 (4%)
Strand=Plus/Plus
Query 11 AAGAATAAATGGAAAAAGCTTCAAACAGCAACAAGTCCACGAAATTCTCGAAAATGCTTC 70
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 4 AAGAATAAATGGAAAAAGCTTCAAACAACAACAAGTCCGCGAAGTTCTCGAAAATGCTTC 63
Query 71 AAAGAGCGATGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCACGGAGAGATTTTCATC 130
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 64 AAAGAGCTTTGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCAGGGAGAGATTTTCATC 123
Query 131 AGCACCGTACGACTTCGACGGCGAACAGAGGA-ATCTTCTTCTCCAGTCCGTTGGTTCCT 189
|| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 124 AGTACCGTACGACTTCGACGGCGAACAGAGGATAT-TTCTTCTCTAGTCCGTTGGTTCCC 182
Query 190 ACGGCTGCTAGAGTTAGGAGAAATA-CAAAATACGAAGCCGTTTTTGCCGAACCCACTTC 248
||||| ||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 183 ACGGCGGCTAGAGTTCGGAGAAGTACCAAAA-ACGAAGCCGTTTTTGCCGAACCCACTTC 241
Query 249 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTCGCTAGACCTAAATGTCCGGAGAAGAA 308
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 242 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTGGCTAAACCTAAATGTCCGGAGAAGAA 301
Query 309 GAA-CAAAGCACCTAAGAATCTCAAAACGGCATCGTCTTTATCGTCTTGTGTTATTAAAG 367
|| |||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||
Sbjct 302 -AATCAAAGCACCTAAGAATCTCAAAACAGCCTCGTCTTTATCATCTTGTGTTATTAGAG 360
Query 368 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTATCTTCTCAATGAGAAGTTATCCGT 427
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 361 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTCTCTTCTCAACGAGAAGTTATCCGT 420
Query 428 CGAGAAAATCCAACTCCACTGCCTTCGCAGCCGCCGCAGCGAGAGAACATCCAATCGCGG 487
|| |||||||||||||||| | || | || ||||||||||||||| ||||||
Sbjct 421 CGGGAAAATCCAACTCCAC--C----GC--C-GC---AGCGAGAGAACATCCGGTCGCGG 468
Query 488 AGGTTGATGCGGTTACGGCAGCGCCTTCATTGGGTGCAATGAAGAAATTCGCGAGCAGTA 547
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 CGGTTGAAGCGGTCACGGCAGCGCCTTCATTGGGTAAAATGAAGAAATTCGCGAGCAGTA 528
Query 548 GAGAAGCTCTCGGTGGATTTGATTGGACGGTCCAGATGAAACGTGA-GAAAGAAGATGTA 606
||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||
Sbjct 529 GAGAAGCTCTCGGTGGATTCGATTGGACGGTCCAGATGAAACGTGACGAA-GAAGAAGTA 587
Query 607 ATGATTCCATGCTCTGTGGGTATACCTCTAACTCAGCTAGAGGATTTGAGTTTGTGTCCG 666
| |||||||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||
Sbjct 588 ACGATTCCATGCTCTGTGAGTATGCCTCTGACTCAGCTAGAGGGTTTGAGTTTATGTCCG 647
Query 667 -AAGCCAAAGAGTGAAGTTAATTTGTGGAAGAGAAGAACCATGGATCGACCAAAACCACT 725
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 648 CAA-CCAAAGAGTGAAGTTAATTTGTGGAGGAGAAGAACCATGGATCGACCAAAACCACT 706
Query 726 TCAAGTAATTAAGTAAAA-GCTCCTTCTTGAATTTTCTTCGTTGCCTTTTCTATGTCCAT 784
||||||||| |||||||| ||| || ||||||||||||||||||| ||||| |||| ||
Sbjct 707 TCAAGTAATGAAGTAAAAAGCTACTGCTTGAATTTTCTTCGTTGC-TTTTCAATGTATAT 765
Query 785 TTGTTTTATGTGTCGGAATTTCGTGGCTGCCACGATG-CTACGTTACTACGTA---CTAA 840
||| ||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||
Sbjct 766 TTGCTTTATGTGTCGGAATTTCGTGTCTGCCACGATGAC-ACGTTACTACGTAATACTAA 824
Query 841 GTCTGAGTTTTGTGAATAGACTGAAA--AA-GACAGAAATAATTCAACGTGTGAATAGAT 897
||||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||||
Sbjct 825 GTCTGAGTTTTGTGAATAGACAGAAATTAAAGACATAAATAATTCAAAGTGTGAATAGAT 884
Query 898 CAAAACGttttttt 911
||||||||||||||
Sbjct 885 CAAAACGTTTTTTT 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5