BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20320.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472260 jgi|Araly1|472260|fgenesh2_kg.1__2214__AT1G20320.1 1664 0.0
Ahg950054 jgi|Araly1|950054|scaffold_801941.1 453 1e-126
Ahg929608 jgi|Araly1|929608|scaffold_302065.1 346 2e-94
Ahg950058 jgi|Araly1|950058|scaffold_801945.1 285 5e-76
Ahg941873 jgi|Araly1|941873|scaffold_602417.1 196 2e-49
Ahg930830 jgi|Araly1|930830|scaffold_303287.1 195 9e-49
Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730 73.1 4e-12
> Ahg472260 jgi|Araly1|472260|fgenesh2_kg.1__2214__AT1G20320.1
Length=1210
Score = 1664 bits (901), Expect = 0.0
Identities = 1118/1221 (92%), Gaps = 21/1221 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTTGATTGAAAACTCATGTCTAGAACCAGAATCCAAAACAGCAACATTAATCTGC 60
|||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||
Sbjct 1 ATGTCTTTGATTGAAAACTCTTGTCTAGAACCAGAATCCAAAAGGGCAATATTAAACTGC 60
Query 61 GGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCGACGGTAGACAGAGAC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 61 GGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCGAAGGTAGATAGAGAG 120
Query 121 TACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCATAAAGCCGTTGCG 180
||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 TACGGGCGAGCATTCGACTATCTCGTCCATGGTTTACAATTAAGCCACAAAGCCGTTGCG 180
Query 181 GTTACAAAGAGCCTTACTACACAACTCGCTTGCCTTAACGAGAGAAAGCTTCATCTAGTC 240
||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||
Sbjct 181 GTTACAAAGAGCCTTACTACACAGTTGGCTTGTCTTAACGAGAGAAAGCTTCATGTAGTC 240
Query 241 CTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTCACGGCTTTCCGAAGGAGAG 300
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 241 CTTGACTTGGACCACACGCTTCTCCATTCTGTTATGGTTTCACGGCTTTCTGAAGGAGAG 300
Query 301 AAGTATCTATTGGGAGAGTCAGATTTTAGGGAAGATCTTTGGACACTTGACAGAGAGATG 360
|||||||| ||| |||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 AAGTATCTGTTGAGAGAATCAGATTTAAGGGAAGATCTTTGGACACTCGACAGAGAGATG 360
Query 361 CTGATAAAACTTCGACCTTTTGTTCACGAGTTTCTGAAAGAAGCCAACGAGATTTTCTCC 420
|||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 361 TTGATTAAACTTCGACCTTTTGTTCACGAGTTTCTGAATGAAGCCAACGAGTTTTTCTCC 420
Query 421 ATGTATGTCTACACGATGGGGAATCGTGACTACGCTCAGGCTGTGCTGAAATGGATTGAT 480
||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 421 ATGTATGTCTACACGATGGGGAATCGTGACTACGCTCAGGCTGTGTTGAAGTTGATTGAT 480
Query 481 CCGAAGAAAGTATACTTTGGGGATAGAGTCATTACCAGAGACGAGAGTGGTTTTTCGAAG 540
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 481 CCGAAGAAAGTATACTTTGGGGATAGGGTCATAACCAGAGACGAGAGTGGTTTTTCGAAA 540
Query 541 ACGCTTGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGACACTCGTCAT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ACGCTAGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGACACTCGGCAT 600
Query 601 GTTTGGCCTGATCATGAGAGGAATCTGCTACAGATTACCAAGTACAGTTACTTCAGAGAT 660
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 GTTTGGCCTGATCATGAGAGGAATCTGCTGCAGATCACCAAGTACAGTTACTTCAGAGAT 660
Query 661 TATAGTCATGATAAGGAGTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAAC 720
|||| ||| || ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 TATAATCAGGA---GGATTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAGC 717
Query 721 CAGGGATCATTGGCGAATGTTTTGAAAGTTCTCAAGGATGTTCACCAAGAATTTTTCAGA 780
||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 718 CAGGGATCATTAGCGAATGTTTTGAAAGTTCTCAAAAAAATTCACCAAGAATTCTTCAGC 777
Query 781 GGCGGAATTGAGGAATTAGATTCAAAGGACGTGAGGCTGTTGCTACAAGAACAACACATA 840
|||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 778 GGCGGAATTGAGAAATTAGATTCAAAGGACGTAAGGCTGTTGCTACAGGAACAACACATA 837
Query 841 GCAGTTTCAATCAAAATTTGCTCCCAAAACCTAAGCCATCAGAAACAAATGTCCCCTTTT 900
||| ||| |||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 838 GCAATTTAAATCAATATTTGCTCCCAAAACCTAAGCCACCATAAACAAATTTCCCCTTTT 897
Query 901 ATATCAGGAAGC-AACAAACATGAAAATGTTAAGTTTTACAAGTCCCAATCAATGGAGTT 959
||||||||| | ||||| ||| | || ||||| |||||| ||| ||||| |||||||||
Sbjct 898 ATATCAGGACGGTAACAAGCATTAGAAGGTTAAATTTTACGAGTTCCAATTAATGGAGTT 957
Query 960 AGATACTATCACAGGTACTGGAAGTAGAG--T---GTATTCATCATCCGAGGAACATTGC 1014
|||||||| || ||||||||||||| || | ||||||||| || ||||||||||||
Sbjct 958 AGATACTAGCATAGGTACTGGAAGTGGAACCTTACGTATTCATCGTCGGAGGAACATTGC 1017
Query 1015 TTGGTTTGCACTTGATAGATGTCGAAGATTCCA-TATGGTAAAATGTGGCAGATGCTAGT 1073
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1018 TTGGTTTGCATTTGATAGATGACGAAGATTCCAGTATGGTAAAATGTGGCAGACGCTAGT 1077
Query 1074 TCGAAAATACATTTACTGTTAATA-TCTTGACGTATGTACATAAGTTTACGCAAACATAA 1132
| |||| ||||||||||||||| | ||||||||||| || | ||| | ||||||||||
Sbjct 1078 TAGAAA-TACATTTACTGTTAA-AGTCTTGACGTATATA--T--GTT-ATGCAAACATAA 1130
Query 1133 GTAGAGTAGATACTTGTGTAATAGTGGTTGAGAAA-TTTTAAAA-GTTGTGTTTAATATA 1190
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1131 GTAGAGTA-ATACTTGTGTAATAGTGGTTGAGAAAATTTTAAAAAGTTGTGTTTAATATA 1189
Query 1191 TCATCTTGCATCTCATCAAAG 1211
||||||||| |||||||||||
Sbjct 1190 TCATCTTGCGTCTCATCAAAG 1210
> Ahg950054 jgi|Araly1|950054|scaffold_801941.1
Length=961
Score = 453 bits (245), Expect = 1e-126
Identities = 638/818 (78%), Gaps = 66/818 (8%)
Strand=Plus/Plus
Query 53 TAATCTGCGGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCG-ACGGTA 111
||| ||| |||||||||||||| |||||||||||||| ||| |||| |||||| || |||
Sbjct 119 TAA-CTGTGGTCACTTCTTCGTTCGTTACGGAATCTGTTGTCACTGTAGATCGAAC-GTA 176
Query 112 GACAGAGAC-T--ACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCAT 168
| |||||| | | || ||||||||||||||||| || |||| ||| | |||||| |
Sbjct 177 G--AGAGACATGGA-GGACGAGCATTCGATTATCTAGTTGATGGATTAGAGTTAAGCGAC 233
Query 169 AAAGCCGTTG-CGGTTACAAAGAGCCTTACTACACAACTCGCTTGCCTT-AACGA-GAGA 225
||| | || |||||| ||| | ||||||||||| || |||| ||| ||||| ||
Sbjct 234 GTAGCAG-TGAAGGTTACTAAGCGAGTTACTACACAAATCACTTG-CTTCAACGACAAG- 290
Query 226 AAGCTTCATC-TAGTCCTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTC-AC 283
|||||||| | | || ||||||||||| |||||||||||||| | ||||| |||| |
Sbjct 291 AAGCTTCA-CTTGGTACTTGACTTGGATCACACGCTTCTCCACACCGTTATGGTTTCGA- 348
Query 284 GGCTTTCCGAAGGAGAGAA-GTATCT-ATTGGGAG-AGTCAGATTTTAGGGAAGATCTTT 340
||||| ||| ||| || |||||| ||| |||| || |||||| ||||||||||| |
Sbjct 349 ATCTTTCTAAAGAAGA-AACGTATCTAATT-GGAGAAG-CAGATTCAAGGGAAGATCTAT 405
Query 341 GGACA-CTTGAC--A-G-------AGAGA-TGC-TGATAAAACTTCGACCTTTTGTTCAC 387
||| | || || | | || || | | ||||||| ||| |||||| |||||||
Sbjct 406 GGA-AGTTTAACGGAGGATACTCAAGCGAGTTCTTGATAAAGCTTAGACCTTATGTTCAC 464
Query 388 GAGTTTCTGAAAGAAGCCAACGAGAT-TTTCTCCATGTATGTCTACACGATGGGGA-ATC 445
|||||||| ||||||||||||||||| ||| ||||||||||| |||||||| |||| |||
Sbjct 465 GAGTTTCTTAAAGAAGCCAACGAGATGTTT-TCCATGTATGTTTACACGAT-GGGAGATC 522
Query 446 GTGACTACGCTCA-GGCTGTGCTGAA-ATGGATTGATCCGAAGAAAGTATACTTTGGGGA 503
|||| ||||| | | ||| |||| | ||||||||| ||||| |||||||||| |
Sbjct 523 GTGATTACGCAAATAAC-GTGTTGAAGCT-AATTGATCCGGAGAAAATATACTTTGGACA 580
Query 504 TAGAGTCATTACCAGAGACGAGAGTGGTT-TTTCGAAGACGCTTGATCTTGTGTTGGCTG 562
| |||| || |||||| |||||||| || | | ||||| ||||||||||| |||||||
Sbjct 581 TCGAGTGATAACCAGAAACGAGAGTCCTTATAT-AAAGACACTTGATCTTGTTTTGGCTG 639
Query 563 ATGAGTGTGGAGTTGTGATTGTGGATGACACTCGTCATGTTTGGCCTGATCATGAGAGGA 622
|||||||||||||||||||||||||||| |||| ||| |||||||||||| | ||||||
Sbjct 640 ATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAAGTTTGGCCTGATGACAAGAGGA 699
Query 623 ATCTGCTACAGATTACCAAGTACAGTTACTTCAGAGATTATA---GTCATGAT---AAGG 676
| |||||| |||| ||||| |||| ||| || || || | | | | ||| |||
Sbjct 700 ACCTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGACAAGACGCGATGTGAAGT 759
Query 677 AGTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAACCAGGGATCATTGGCGA 736
| || |||||||| ||||||||||||||||||||| || | ||| | ||||| |||||||
Sbjct 760 ACTCGAAATCTTATGCAGAGGAGAAGAGAGACGAGGGTCGAAACGATGGATCGTTGGCGA 819
Query 737 ATGTTTTGAAAGTTCTCAAGGATGTTCACCAAGAATT-TTTCAGAGGCGGAATTGAGGAA 795
|||||||||||||| ||||||| || | ||| ||| ||| || |||||| ||||| ||
Sbjct 820 ATGTTTTGAAAGTTATCAAGGAAATTTATGAAGGATTCTTT-AGCGGCGGAGTTGAGAAA 878
Query 796 ---TTAGAT-T-----CAAAGGACGTGAGGCTGTTGCT 824
|||||| | ||||||| |||||| |||||||
Sbjct 879 GAGTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCT 916
> Ahg929608 jgi|Araly1|929608|scaffold_302065.1
Length=932
Score = 346 bits (187), Expect = 2e-94
Identities = 610/806 (76%), Gaps = 62/806 (8%)
Strand=Plus/Plus
Query 57 CTGCGGTCACTTCT-TCGTCCGTTACGGAATCTGCTGT-AACTGCAGATCGACGGTAGAC 114
||||||||||| | | || ||||||||| ||||| | ||| | ||| |||||| |
Sbjct 104 CTGCGGTCACTGGTAT-GTTCGTTACGGAGTCTGC-ATCGCCTGTAAATCAACGGTAAAT 161
Query 115 AGA-GACTACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCATAAAGC 173
| | | | | |||||||||||||||||||||||||| || || || ||||||| ||||
Sbjct 162 AAACG-CCAAGGCCGAGCATTCGATTATCTCGTCCAAGGTTTGCAGCTAAGCCACGAAGC 220
Query 174 CGTTGCGGTT-ACAAAGAGCCTTACTACACAACTCGCTTGCCTTAACGAG-AGAAAGCTT 231
| || ||| || ||| || |||| || || || ||| || || ||| || ||||||
Sbjct 221 AGCAGC-GTTCACGAAGCGCTTTACAACGGAATTCTATTGTCTCAATGAGAAG-AAGCTT 278
Query 232 CATCTAGTCCTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTCACGGCTTTCC 291
|| || ||||||||||||||||||||||||||||| ||||||| | ||||| || ||
Sbjct 279 CACCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCTATTAGGGTTTCAATTCTCTCA 338
Query 292 GAAGGAGAGAAGTATCTATTGGGAGA-G--T---CAGATTTTA-GGGAAGATCTTTGGAC 344
||| ||||| ||||||| | | ||| | | || | | | |||||||||| ||||
Sbjct 339 GAAACAGAGAGGTATCTAATCGAAGAAGCGTGTTCA-ACTACAAGGGAAGATCTGTGGA- 396
Query 345 ACTTG-ACAGAGAGATGCT-GATAAAACTTCGACCTTTTGTTCACGAGTTTCTGAAAGAA 402
| ||| ||| || | || || ||| || || |||||||||||||||||| |||| |||
Sbjct 397 AGTTGGACATCGAT-TACTTGACAAAGCTACGCCCTTTTGTTCACGAGTTTTTGAAGGAA 455
Query 403 GCCAACGAGATTTTCTCCATGTATGTCTACACGATGGGGAATCGTG-ACTACGCTC-AGG 460
|||||||| || ||| | |||||||| || || ||||| | | | | | ||||| | |
Sbjct 456 GCCAACGAAATGTTCACAATGTATGTTTATACAATGGGTACTAGAGTA-TACGC-CGAAT 513
Query 461 C-TGTGCTGAAA-TGGATTGATCCGAAGA-AAGTATACTTTGGGGATAGAGTCATTACCA 517
| | || |||| || |||||||| |||| || | || ||||||||| |||| || || |
Sbjct 514 CAT-TGTTGAAGCTG-ATTGATCCCAAGAGAATT-TATTTTGGGGATCGAGTGATAACAA 570
Query 518 GAGACGAGAGTGGTTTT-TCGAAGACGCTTGATCTTG-TGTTGGCTGATGAGTGTGGAGT 575
||||||||||| || | | |||||| |||||| ||| | |||||||||||| |||||||
Sbjct 571 GAGACGAGAGTCCTTATGT-GAAGACACTTGAT-TTGGTTTTGGCTGATGAGCGTGGAGT 628
Query 576 TGTGATTGTGGATGACACTCGTCATGTTTGG-CCTGATCATGAGAGGAATCT-GCTACAG 633
|| ||||||||||| || ||| |||||||| || |||| |||| || || | || ||
Sbjct 629 GGTCATTGTGGATGATACGCGTGATGTTTGGACCC-ATCACAAGAGTAACCTAG-TAGAG 686
Query 634 ATTACCAAGTAC-AGTTACTTCAGAGATTA-TAGTC-ATGATAAGGAGTCAAAATCTTAC 690
|||| | ||||| | | | ||||||| | | | | | | || | | ||||||| ||||||
Sbjct 687 ATTAACGAGTACCACT-ATTTCAGAG-TCAATGGCCCA-GA-A-G-AGTCAAAGTCTTAC 740
Query 691 GCAGAGGAGAAGAGAGACGAGAGTAGGAACCAG-GGATC-ATTGGCGAATGTTTTGAAAG 748
| |||||||||||||||||||||| ||| || || | |||||| |||||| |||||
Sbjct 741 ACGGAGGAGAAGAGAGACGAGAGTAAAAAC-AGTGG-TGGATTGGCCAATGTTCTGAAA- 797
Query 749 TT-CTCAAGGATGTTCACCAAGAATTTTTCAGAGGCGGAATTGAGGAATTAGATTCA-AA 806
|| || ||||| |||||| | | ||| ||||||| | || || || ||||| ||| ||
Sbjct 798 TTACTTAAGGAAGTTCACTATGGATTCTTCAGAGTC--AAG-GAAGAGTTAGAGTCACAA 854
Query 807 GGACGTGAGGCTGT-TGCTACAAGAA 831
| |||||||| | | |||||||||||
Sbjct 855 G-ACGTGAGGTT-TATGCTACAAGAA 878
> Ahg950058 jgi|Araly1|950058|scaffold_801945.1
Length=472
Score = 285 bits (154), Expect = 5e-76
Identities = 345/433 (80%), Gaps = 30/433 (7%)
Strand=Plus/Plus
Query 414 TTTCTCCATGTATGTCTACACGATGGGGA-ATCGTGACTACGCTCAG-GCTGTGCTGAA- 470
||| ||||||||||| |||||||| |||| ||||||| ||||| || | ||| ||||
Sbjct 3 TTT-TCCATGTATGTTTACACGAT-GGGAGATCGTGATTACGCAAAGAAC-GTGTTGAAG 59
Query 471 ATGGATTGATCCGAAGAAAGTATACTTTGGGGATAGAGTCATTACCAGAGACGAGAGTGG 530
| |||||||||| |||||||||||||||||||| |||| || |||||| ||||||||
Sbjct 60 CT-GATTGATCCGGAGAAAGTATACTTTGGGGATCGAGTGATAACCAGAAACGAGAGTCC 118
Query 531 TT-TTTCGAAGACGCTTGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATG 589
|| | | ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 119 TTATAT-AAAGACACTTGATCTTGTTTTGGCAGATGAGTGTGGAGTTGTGATTGTGGATG 177
Query 590 ACACT-CGTCATGTTTGGCCTGATCATGAGAGGAATCTGCTACAGATTACCAAGTACAGT 648
| ||| | ||| |||||||||||||| ||||||| |||||| |||| ||||| |||| |
Sbjct 178 ATACTGC-TCAAGTTTGGCCTGATCACAAGAGGAACCTGCTAGAGATCACCAAATACAAT 236
Query 649 TACTTCAGAGATTATA---GTCATGAT---AAGGAGTCAAAATCTTACGCAGAGGAGAAG 702
|| || || || | | | | ||| ||| | || |||||||| ||||||||||||
Sbjct 237 TATTTTAGTGACAAGACAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAG 296
Query 703 AGAGACGAGAGTAGGAACCAGGGATCATTGGCGAATGTTTTGAAAGTTCTCAAGGATGTT 762
||||||||| || | ||| | ||||| |||| |||||||||||||||| ||||||| |||
Sbjct 297 AGAGACGAGGGTCGAAACGATGGATCGTTGGGGAATGTTTTGAAAGTTATCAAGGAAGTT 356
Query 763 CACCAA-GAATT-TTTCAGAGGCGGAATTGAGGAA---TTAGAT-T-----CAAAGGACG 811
| || || || ||| || |||||| ||||| || |||||| | ||||||| |
Sbjct 357 TATGAACGA-TTCTTT-AGCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATG 414
Query 812 TGAGGCTGTTGCT 824
||||| |||||||
Sbjct 415 TGAGGTTGTTGCT 427
> Ahg941873 jgi|Araly1|941873|scaffold_602417.1
Length=949
Score = 196 bits (106), Expect = 2e-49
Identities = 367/487 (75%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 362 TGATAAAACTTCGACCTTTTGTTCACGAGTTTCTGAAAGAA-GCCAACGAGATTTTCTCC 420
||||||| || |||||||||||||| |||||||||||||| | ||| ||||| ||||||
Sbjct 424 TGATAAAGCTGAGACCTTTTGTTCACCAGTTTCTGAAAGAATG-CAATGAGATGTTCTCC 482
Query 421 ATGTATGTCTACACGATGGG-GAATCGTGACTACGCTCAGGCTGTGCTGAAATGGATTGA 479
|||||||| ||||| | ||| | | |||| || ||||||| |||| || | | ||||||
Sbjct 483 ATGTATGTTTACACAAAGGGTG-GTTGTGATTATGCTCAGGTTGTGTTGGAGTTGATTGA 541
Query 480 TCCGAAGAAAG-TATACTTTGGGGATAGAGTCATTACCAG-AGACGAGAGTGGT-TTTTC 536
|||| || ||| | |||||||| || | || || || || ||| |||||| | |||
Sbjct 542 TCCGGAG-AAGATTTACTTTGGAAATCGGGTTATAACGAGAAGA-GAGAGTCCTGATTT- 598
Query 537 GAAGACGCTTGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGACAC-TC 595
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||| | |
Sbjct 599 GAAGACGCTTGATCTTGTGTTGGCTGATGAACGTGGGGTTGTGATTGTTGATGATAAGT- 657
Query 596 GTCA-TGTTTGGCCTGATCATGAGAGGAATCT-GCTACAGATTACCAAGTACA-GTTACT 652
|| | |||||||||| || | ||| || || ||| ||||| | ||||||| || | |
Sbjct 658 GT-AGTGTTTGGCCTCATGACAAGAAAAA-CTTGCTGCAGATCGCAAAGTACAAGT-ATT 714
Query 653 TCAGAGATTATAGTCATGATAAGGAGTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGA 712
| |||| | | || || | | ||| ||| | | ||| | |||||||| ||||
Sbjct 715 TTGGAGACCA-A-TCTTGTTCATTT-TCAGAATGT-A---AGA--ATAAGAGAGATGAGA 765
Query 713 GT-AGGA-ACCAGGGATCATTGGCGAATGTTTTGAAAGTTC-TCAAGGATGTTCACCAA- 768
|| |||| | ||| | |||||| | |||||||| | ||| |||||||||||||| ||
Sbjct 766 GTGAGGAGAA-AGG-ACCATTGGATATTGTTTTGAGA-TTCCTCAAGGATGTTCAC-AAT 821
Query 769 GAATTTTTCAGAGGC-GGAATTGAGGAA----TTAGATTCAAAGGACGTGAGGCTGTTGC 823
||||| ||| | | | || | |||||| || |||||| ||| ||||||| |||||
Sbjct 822 GAATTCTTCTGTGACTGG--TCGAGGAAAGACTTGGATTCAGTGGATGTGAGGCCGTTGC 879
Query 824 TACAAGA 830
|| ||||
Sbjct 880 TAAAAGA 886
> Ahg930830 jgi|Araly1|930830|scaffold_303287.1
Length=904
Score = 195 bits (105), Expect = 9e-49
Identities = 321/422 (76%), Gaps = 28/422 (7%)
Strand=Plus/Plus
Query 356 AGAT-GCT-GATAAAACTTCGACCTTTTGTTCACGAGTTTCT-GAAAGAAGCCAACGAGA 412
|||| ||| |||||| || ||||| ||||||| ||| || || |||||||||||| ||||
Sbjct 369 AGATCGCTTGATAAAGCTACGACCCTTTGTTCGCGACTT-CTTGAAAGAAGCCAATGAGA 427
Query 413 TTTTCTCCATGTATGTCTACACGATGGGGAATCGTGACTACGCTCAGGCTGTGCT-GAAA 471
| ||| | |||||||| ||||| | ||| | ||| | |||||| | ||||| || | |
Sbjct 428 TGTTCACAATGTATGTTTACACAAAGGGTACTCGCAAATACGCTAAAGCTGT-CTTGGAG 486
Query 472 -TGGATTGATCCGAAGAAAGTATACTTTGGGGATAGAGTCATTACCAGAGACGAGAGTGG 530
|| |||||||| || | | | || ||||| |||||||| ||||| | ||||||||||
Sbjct 487 CTG-ATTGATCCTAATAGACTCTATTTTGGTGATAGAGTGATTACAAAAGACGAGAGTCC 545
Query 531 TTTTTC-GAAGACGCTTGATCTTG-TGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGAT 588
| | | ||||||||||||| ||| | |||||||| ||| |||| || |||||||| |||
Sbjct 546 TCAT-CAGAAGACGCTTGAT-TTGGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTTGAT 603
Query 589 GACACTCGTCATGTTTGGCCTGATCATGAGAGGAATCTGCTACAGATTACCAAGTACA-G 647
|| | ||| || ||||||| |||| |||| || || || |||||| |||||||| |
Sbjct 604 GATAGGCGTGATATTTGGCCCCATCACAAGAGTAACCTAATAGAGATTAGCAAGTACAAG 663
Query 648 TTACTTCAGAGATTATAGTCATGATAAGGAGTCAAAATCTTACGCAGAGGAGAAGAGAGA 707
| | ||||||| | | || | |||| |||||| |||||| | ||| |||||| |||
Sbjct 664 T-ATTTCAGAG-TCA--GTG--GCCAAGG-GTCAAATTCTTACTCTGAGAAGAAGACAGA 716
Query 708 CGAGAGTAGGAACCAG--GGATC-ATTGGCGAATGTTTTGAAAGTT-CTCAAGGATGTTC 763
||||||| | || || || | ||||||||||||||| ||| || ||||| | ||||
Sbjct 717 CGAGAGT-GAAAA-AGACGG-TGGATTGGCGAATGTTTTAAAA-TTACTCAAACAAGTTC 772
Query 764 AC 765
||
Sbjct 773 AC 774
> Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730
Length=1779
Score = 73.1 bits (39), Expect = 4e-12
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 226 AAGCTTCATCTAGTCCTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTCACGG 285
|||||||| || ||||||||||||||||||||||||||||| || ||| | || ||
Sbjct 262 AAGCTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCCGTTAGGGTT-CAATT 320
Query 286 -CTTTCCGAAGGAGAGAAGTATCTA 309
|| ||||| | |||||||||||||
Sbjct 321 TCTCTCCGATGCAGAGAAGTATCTA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5