BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20330.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472261 jgi|Araly1|472261|fgenesh2_kg.1__2215__AT1G20330.1 1988 0.0
Ahg926999 jgi|Araly1|926999|scaffold_202560.1 857 0.0
> Ahg472261 jgi|Araly1|472261|fgenesh2_kg.1__2215__AT1G20330.1
Length=1358
Score = 1988 bits (1076), Expect = 0.0
Identities = 1281/1375 (93%), Gaps = 34/1375 (2%)
Strand=Plus/Plus
Query 18 AAAACTTTTTGTCATAAATCAGGCAAAGAAGTAAAAGAGACTTAAAActctctctctctc 77
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAACTTTTTGTCATAAATCAGGC-AAGAAGTAAAAGAGGCTTAAAACTCTCTCTCTCTC 59
Query 78 tctct-T-GGTCT-TCCTCACTCTTAACG-AAAATGGACTCTTTAACACTCTTCTTCACC 133
||||| | ||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 60 TCTCTCTCTCTCTCTCCTCACTCTTAACGAAAAATGGACTCTCTAACACTCTTCTTCACC 119
Query 134 GGTGCACTCGTCGCCGTCGGTATCTACTGGTTCCTCTGCGTTCTCGGTCCAGCAGAGCGT 193
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 GGCGCTCTCGTCGCCGTCGGTATCTACTGGTTCCTCTGCGTCCTCGGTCCAGCAGAGCGT 179
Query 194 AAAGGCAAACGAGCCGTAGATCTCTCTGGTGGCTCAATCTCCGCCGAGAAAGTCCAAGAC 253
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 180 AAAGGCAAACGAGCCGTAGATCTCTCCGGCGGCTCAATCTCCGCCGAGAAAGTCCAGGAC 239
Query 254 AACTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAAAGAAATCGAAACCGCCGAGAAA 313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAAAGAAATCGAAACCGCCGAGAAA 299
Query 314 GTTCCAGACTTCGTCGACACATTCTACAATCTCGTCACCGACATATACGAGTGGGGATGG 373
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GTTCCAGACTTCGTCGACACATTCTACAATCTCGTCACCGACATCTACGAGTGGGGATGG 359
Query 374 GGACAATCCTTCCACTTCTCACCATCAATCCCCGGAAAATCTCACAAAGACGCCACGCGC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGACAATCCTTCCACTTCTCACCATCAATCCCCGGAAAATCTCACAAAGACGCCACGCGC 419
Query 434 CTCCACGAAGAGATGGCCGTAGATCTGATCCAAGTCAAACCTGGTCAAAAGATCCTAGAC 493
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CTCCACGAAGAGATGGCCGTAGATCTGATCCAAGCCAAACCTGGTCAAAAGATCCTAGAC 479
Query 494 GTCGGATGCGGTGTCGGCGGTCCGATGCGAGCGATTGCATCTCACTCGCGAGCTAACGTA 553
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTCGGATGCGGCGTCGGCGGTCCGATGCGAGCGATTGCATCTCACTCGCGAGCTAACGTA 539
Query 554 GTCGGGATTACAATAAACGAGTATCAGGTGAACAGAGCTCGTCTCCACAATAAGAAAGCT 613
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GTTGGGATTACGATAAACGAGTATCAGGTGAACAGAGCGCGTCTCCACAATAAGAAAGCT 599
Query 614 GGTCTCGACGCGCTTTGCGAGGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGAC 673
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGACTCGACGCGCTTTGCGAGGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGAC 659
Query 674 AACAGTTTCGACGGTGCTTATTCCATCGAAGCCACGTGTCACGCGCCGAAGCTGGAAGAA 733
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||
Sbjct 660 AACAGTTTCGACGGTGCTTATTCGATCGAGGCCACGTGTCACGCGCCGAAGTTAGAAGAA 719
Query 734 GTGTACGCAGAGATCTACAGGGTGTTGAAACCCGGATCTATGTATGTGTCGTACGAGTGG 793
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 GTGTACGCAGAGATCTACAGGGTGTTGAAACCCGGATCTATGTATGTATCGTACGAGTGG 779
Query 794 GTTACGACGGAGAAATTTAAGGCGGAGGATGACGAACACGTGGAGGTAATCCAAGGGATT 853
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 780 GTAACGACGGAGAAATTTAAGGCGGAGGATGATGAACACGTGGAGGTAATTCAAGGGATC 839
Query 854 GAGAGAGGCGATGCGTTACCAGGGCTTAGGGCTTACGTGGATATAGCTGAGACGGCTAAA 913
|||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 840 GAGAGAGGAGATGCGTTACCTGGTCTTAGGGCTTACGTGGATATAGCGGAGACTGCTAAA 899
Query 914 AAGGTTGGGTTTGAGATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTGAGCCGTGG 973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 AAGGTTGGGTTTGAGATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTAAGCCGTGG 959
Query 974 TGGACTAGGCTTAAGATGGGTAGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT 1033
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGACTAGGCTTAAGATGGGTCGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT 1019
Query 1034 TTGTCAGCGGTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAG 1093
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTGTCTGCTGTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAG 1079
Query 1094 ACTGCTGATTATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATT 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTGCTGATTATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATT 1139
Query 1154 CTCTGCAGAAAACCGGAGTCACCGGAGGAGA-GTTCTTGAGAA-AGGTAGAAAGGAAACA 1211
||||||||||||||||| || || | | | | ||| | || | || |||
Sbjct 1140 CTCTGCAGAAAACCGGAATCTTCGTCGCCGCCGC-CG-GAGGAGAGTTCTTGAG-AAAGG 1196
Query 1212 TCACCGGAAAAAGTATGGAGAAttttctcaatttgtttttatttt-t----aagttaaat 1266
| | | | |||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1197 T-A--G-A----GTATGGAGAATTGTCTCAATTTGTTTTTATTTTATTTTTAAGTTAAAT 1248
Query 1267 caacttggttattgtactattttt-gtgttt--t---aatttggtttgtgtttcaagaat 1320
||||||||||||||||| ||||| |||||| | |||||||||||||||| ||||||
Sbjct 1249 GAACTTGGTTATTGTACTCTTTTTTGTGTTTAATTTTAATTTGGTTTGTGTTTTAAGAAT 1308
Query 1321 tattagtttttttttGTTTTGTTGCATATGAGAATCTTACTCTTGATTTCTCCGC 1375
| ||||||||||||| |||| || ||| |||||||||||||||||||||||||
Sbjct 1309 TTTTAGTTTTTTTTT-TTTT-TTA-ATA--AGAATCTTACTCTTGATTTCTCCGC 1358
> Ahg926999 jgi|Araly1|926999|scaffold_202560.1
Length=1123
Score = 857 bits (464), Expect = 0.0
Identities = 888/1089 (82%), Gaps = 44/1089 (4%)
Strand=Plus/Plus
Query 105 AAATGGACTCTTTAACACTCTTCTTCACCGG-TGCACTCGTCGCCGTCGGTATCTACTGG 163
|||||||||| | | |||| || || ||| || ||| |||||| || ||||||||
Sbjct 22 AAATGGACTCGGTGGCTCTCTACTGCA-CGGCTGGTCTCATCGCCGGCGCCCTCTACTGG 80
Query 164 TTCCTCTGCGTTC-TCGGTCCAGCAGAGCGTAAA-GGCAAACGAGCCGTAGATCTCTCTG 221
||| | || | || | |||||||||||||| ||| |||||||||||| |||||||||| |
Sbjct 81 TTCATATGTG-TCTTAGGTCCAGCAGAGCG-AAAGGGCAAACGAGCCTTAGATCTCTCCG 138
Query 222 GTGGCTCAATCTCCGCCGAGAAAGTCCAAGACAACTACAAACAGTACTGGTCTTTCTTCC 281
| ||||||||| ||||||||| ||| |||||||||| || || ||||||||||||||||
Sbjct 139 GCGGCTCAATCAACGCCGAGAACGTCAAAGACAACTATAACCAATACTGGTCTTTCTTCC 198
Query 282 GCCGTCCAAAAGAAATCGAAACCGCCGAGAAAGTTCCAGACTTCGTCGACACATTCTACA 341
|||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 199 GCCGACCAAAAGAGATCGAAACCGCCGAGAAAGTTCCTGACTTCGTCGACACGTTCTACA 258
Query 342 ATCTCGTCACCGACATATACGAGTGGGGATGGGGACAATCCTTCCACTTCTCACCATCA- 400
||||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || |||
Sbjct 259 ATCTCGTAACCGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCC-TCAT 317
Query 401 ATCCCCGGAAAATCTCACAAAGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTG 460
|||||||||||||| |||||||||||||| | |||||||||| |||||||| |||||
Sbjct 318 ATCCCCGGAAAATCCCACAAAGACGCCACAAGGATCCACGAAGAAATGGCCGTCGATCTC 377
Query 461 ATCCAA-GTCAAACCTGGTCAAAAGATCCTAGACGTC-GGATGCGGTGTCGGCGGTCCGA 518
|| ||| || |||||||| ||||||||||| |||| | || ||||| || || || ||||
Sbjct 378 AT-CAACGTGAAACCTGGACAAAAGATCCTCGACG-CTGGTTGCGGCGTTGGTGGGCCGA 435
Query 519 TGCGAGCGATTGCATCTCACTCGCGA-G-CTAACGT-AGTCGGGATTACAATAAACGAGT 575
|| |||| || || | || || | | | | || || | | || || || || |||||||
Sbjct 436 TGAGAGCCATCGCGGCCCATTC-CAAGGCCCAA-GTCACT-GGAATCACCATCAACGAGT 492
Query 576 ATCAGGTG-AACAGAG-CTCGTCTCCACAATAAGAAAGCTGGTCTCGACGCGCTTTGCGA 633
| || ||| ||| ||| | | || ||||| ||||||||||| || || | |||||| |
Sbjct 493 ACCAAGTGCAAC-GAGCCAAG-CTTCACAACAAGAAAGCTGGACTTGATTCTCTTTGCAA 550
Query 634 GGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGACAACA-GTTTCGACGGTGCTT 692
||||| || |||||||| | |||||||||||||||| |||| | |||||||| ||||
Sbjct 551 CGTCGTTTGCGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACG-TTCGACGGCGCTT 609
Query 693 ATTCCATCGAAGCCACGTGTCACGCGCCGAAGCTGGAAGAAGTGTACGCAGAGATCTACA 752
| || |||||||||||||||||||| || || || |||||||| ||| ||||||||| ||
Sbjct 610 ACTCGATCGAAGCCACGTGTCACGCTCCTAAACTAGAAGAAGTATACTCAGAGATCTTCA 669
Query 753 GGGTGTTGAAACCCGGATCTATGTAT-GTGTCGTACGAGTGGGTTACGACGGAGAAATTT 811
| ||| ||||||| |||||| ||| | ||||| ||||||||||| || || |||||||
Sbjct 670 GAGTGATGAAACCAGGATCTTTGT-TCGTGTCCTACGAGTGGGTCACCACTGAGAAATAC 728
Query 812 A-AGGCGGAGGATGACGAACACGTGGAGGTAATCCAAGGGATTGAGAGAGGCGATGC-GT 869
| || | |||||||| |||||| ||| || || |||||||| |||||||| || || |
Sbjct 729 AGAGAC-GAGGATGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACT 787
Query 870 TACCAGGGCTTAG-GGCTTACGTGGATATAGCTGAGACGGCTAA-AAAGGTTGGGTTTGA 927
| || || || || || ||| ||||| |||| |||||| || ||| |||||||||||
Sbjct 788 T-CCTGGACTAAGAAGC-TACAAAGATATCGCTGCGACGGCGAAGAAA-GTTGGGTTTGA 844
Query 928 GATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTGAGCCGTGGTGG-ACTAGGCTT- 985
| | || |||||||| ||| |||| | |||||| || | ||||||||| || || ||
Sbjct 845 GGTTGTCAAGGAGAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAAC-CGG-TTA 902
Query 986 AAGATGGGTAGGCTTGCTTATTGGAGGAATCACAT-T-GTGGTTCAGATT-TTGTCAGCG 1042
|||||||| |||||||||||||||| ||| | ||| | |||||| |||| || || ||
Sbjct 903 AAGATGGGAAGGCTTGCTTATTGGA-GAAAC-CATGTCGTGGTTGTGATTCTT-TCTGCT 959
Query 1043 GTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAGACTGCTGAT 1102
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 ATTGGGGTTGCTCCTAAAGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGAT 1019
Query 1103 TATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATTCTCTGCAGA 1162
|||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| |||
Sbjct 1020 TATTTGACCAGAGGTGGTGAGACTGGAATCTTCTCGCCGATGCATATGATTCTCTGTAGA 1079
Query 1163 AAACCGGAG 1171
||||| |||
Sbjct 1080 AAACCAGAG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5