BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20350.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472263 jgi|Araly1|472263|fgenesh2_kg.1__2217__AT1G20350.1 915 0.0
> Ahg472263 jgi|Araly1|472263|fgenesh2_kg.1__2217__AT1G20350.1
Length=701
Score = 915 bits (495), Expect = 0.0
Identities = 638/704 (91%), Gaps = 21/704 (3%)
Strand=Plus/Plus
Query 1 CTTGTAGATCAAAATCGAAAATCAATGGGAACTCCAGAATCATCGAGAGAGCCATGTCCG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGTAGATCAAAATCGAAAATCGATGGGAACTCCAGAATCATCGAGAGAGCCATGTCCG 60
Query 61 GATCGGATCCTAGATGATGTCGGAGGTGCGTTTGCGATGGGTGCTGTTGGTGGATCAGCG 120
||||| ||||| |||||| | ||| ||||||||| |||||||||||||||||||||||||
Sbjct 61 GATCGTATCCTCGATGATTTGGGAAGTGCGTTTGGGATGGGTGCTGTTGGTGGATCAGCG 120
Query 121 TATCACCTCAT-AAGAGGAATCTACAACTCTCCCGGCGGAGCTCGTCTCTCCGGCGGCGT 179
| |||||| || || ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 121 TTTCACCTAATCAA-AGGAATCTACAACTCACCCGCCGGAGCTCGTCTCTCCGGCGGCGT 179
Query 180 TCAAGCTTTGAGAATGAGCGGGCCGAGAAG-CGGAGGAAGCTTCTCCGTGTGGGGTGGTC 238
||||||| | ||||||| ||||||| || |||||||||||| |||||||||||||||
Sbjct 180 TCAAGCTATAAGAATGAACGGGCCG-CTAGTGGGAGGAAGCTTCGCCGTGTGGGGTGGTC 238
Query 239 TTTACTCAACCTTCGATTGTGCGT-TGGTGTACGCAAGACAAAAGGAAGATCCATGGAAC 297
||| ||||||||| ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 239 TTTTCTCAACCTTTGATTGCGC-TATGGTGTACGCAAGACAAAAGGAAGATCCATGGAAC 297
Query 298 TCGATCTTATCTGGTGCAGCCACTGGAGGATTCCTCTCGTTGCGTCAAGGCTTAGGCGCG 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 TCGATCTTATCTGGTGCAGCCACTGGAGGATTCCTCTCGTTACGTCAAGGCTTAGGCGCG 357
Query 358 TCTGCTAGATCGGCTTTAGTCGGAGGTGTGTTGTTGGCTATGATAGAAGGAGTTGGTATC 417
||| |||||||||||||||||||||||||||| |||||| | |||||||||| |||||||
Sbjct 358 TCTTCTAGATCGGCTTTAGTCGGAGGTGTGTTTTTGGCTCTCATAGAAGGAGCTGGTATC 417
Query 418 ATGTTAAACAAAGTTCAGAGTACTGCGCATAACGAGCAGTTCATGGAGGATCATGCAGCT 477
||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 418 ATGTTGAACAAAGTTCAGAGTGCTATGCAGAACGAGCAGTTCATGGAGGATCATGCAGCT 477
Query 478 ACTTCTTTACCATATGGT---A-T--GGGTCAGATATCTGGTCAGTCCGTACCGGTACCG 531
|||| ||||| |||||| | | ||||||||||| ||||||| |||||||||||| |
Sbjct 478 TCTTCGTTACCTTATGGTGTGAATATGGGTCAGATATTTGGTCAGCCCGTACCGGTACTG 537
Query 532 GAGActtcttcttcttct--t-c------tGGTTCGGTATCTTGGTTTGGGAGTTTGTTT 582
|||||||||||| ||||| | | |||||||| |||||||||||| |||||||||
Sbjct 538 GAGACTTCTTCTGCTTCTGGTTCGGAAGCTGGTTCGGGATCTTGGTTTGGAAGTTTGTTT 597
Query 583 AAGAAGAAGAAAGAAACAGAGGATCATCATTCAGAGAGCAGAACTCACATTTTGGAGAGC 642
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 AAGAAGAAGAAGGAAACAGAGGATCATCATTCAGAGAGCAAAACTCACATTTTGGAGAGC 657
Query 643 TTTGATGCTCCTCCTGTGCCTACTTATGAGTTTAAGTGATGGAA 686
|||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 658 TTTGATGCTCCTCCTGTGCCAACTTATGAGTTTAAGTAATGGAA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5