BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20360.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911865 jgi|Araly1|911865|Al_scaffold_0001_2119 451 5e-126
Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1 326 3e-88
Ahg911874 jgi|Araly1|911874|Al_scaffold_0001_2128 255 4e-67
> Ahg911865 jgi|Araly1|911865|Al_scaffold_0001_2119
Length=1182
Score = 451 bits (244), Expect = 5e-126
Identities = 793/1044 (76%), Gaps = 93/1044 (9%)
Strand=Plus/Plus
Query 82 CCTTTGCATCTCCTCGACCAAATTCTTTTCAGATTGGAACCCAAATCTCTGGCGATGATG 141
||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||| ||| |||
Sbjct 14 CCTTT-CATCTTCTCGACCAGATTCTCTTCAGATTGGACCCCAAATCTCTGGGGATAATG 72
Query 142 AAATCCACAAATAGAACTATCAATTCGCATATATCTGAC---CCG--CTTT-T---T-GA 191
|| ||| |||||| ||||||||||||||||||| ||| ||| ||| | | ||
Sbjct 73 CGATGCACTAATAGATCTATCAATTCGCATATATCCGACGATCCGAATTTTGTAACTGGA 132
Query 192 -A----TCCGAATACTT-TTC-CCGGTTAGAATCCAGTTTGTA-TAACCTTTCCCCCGGT 243
| |||||||| || ||| | |||| | |||||||| || | ||||| | |
Sbjct 133 TACTCTTCCGAATA-TTCTTCTCGGGTT-GGCTCCAGTTT-TATTCACCTTGGGTGCTAT 189
Query 244 GGCGCCAGATACGTCATGTGCCAGCC-TTTAGTCTCTTCATGCAAATCTATGTCAATGGG 302
|||| | ||| || | ||||| || ||| | |||||||||| | ||||||||| | ||
Sbjct 190 GGCGACTTTTACATCTTCTGCCA-CCATTTGGCCTCTTCATGCGATTCTATGTCAGT-GG 247
Query 303 GGAAAA-AGCAA--TTCA-AGGTAATTTCCGATGTTACATGTTGGGGTCATGCTCTGGCC 358
|||| ||||| || | | | | || | |||||| | || || |||||||| ||||
Sbjct 248 ACAAAAGAGCAATGTTGACATATCACTT--G-TGTTACTTTTTCGGCTCATGCTCCGGCC 304
Query 359 TTCTCCTACTGTACATCGG-TGGCCTCTTCGTCGCAAATCCCCTCACAAAGAGGTTTCGA 417
||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCTCTTACTATACAT-GGATGGCCTCTTCGTCGCAAATCCCCTCACAAAGAGGTTTCGA 363
Query 418 TATTTGGATC-CTTCTGGCTCAAAGTTTATACCT-ACGCTAAGTGGTGAT-C-GCTGGAT 473
|||| ||| || ||||||||||| || | || ||| || ||||| | | | | |
Sbjct 364 CGTTTGAATCACT-CTGGCTCAAAGCTTCTGTCTCACG-TATTTGGTGCTACTGTTCCTT 421
Query 474 TT-AT-----TT-----G-GCACAT--C-CGGA--GAGAGC--GATGTGCGTTGGTTTTG 514
|| || || | | ||| | || | ||||| ||| || |||||||| |
Sbjct 422 TTTATGACGCTTTACAAGAGAACAAAGCTCGTATAGAGAGAAAGATCTGTGTTGGTTTCG 481
Query 515 CGGTT-GATCG-A--AAGAGATT-CAAGATCGTCTGCATACTTGAGATGGAGACGAG-GT 568
||| | || | || || || ||||||||| |||||||| |||||||| ||| | ||
Sbjct 482 TGGTAAG-TCCCACCAA-AGGTTTCAAGATCGTATGCATACTCGAGATGGAAACG-GTGT 538
Query 569 ATGAATTCGAAATCAACGACGGCGATTCATGGAGATTATCAAAAACGACTATCAATGCT- 627
| | |||||| |||| ||||| ||||||||||| ||||| | || || |||| ||
Sbjct 539 ACGGATTCGAGATCAGTGACGGAGATTCATGGAGGTTATCGGAGACAACCATCACCACTA 598
Query 628 GACTCAAAAAGTGATCTCACCA-AGTGGATGAAACCTGTTTACTTGGAAGGCACTCTTCA 686
| ||||||||| || ||| | | | ||||| ||||||||||||||||| |||||||||||
Sbjct 599 G-CTCAAAAAGCGAACTCGCGACA-TGGATAAAACCTGTTTACTTGGACGGCACTCTTCA 656
Query 687 TTGGTTGAGAAACGACGGGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACGCTT 746
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 657 CTGGTTGAGAAACGACGGGAGTATCATAGCTTTCAATCCTGAGACAGAGCAAGCAAGCTT 716
Query 747 -GATTCCTTCCGGTTTTC-ATCA-GGAAGTACCGGATATGAAACTG-TTACTT-GCGGCA 801
| |||||||| | ||| ||| ||| | |||||||| ||| || || || |||| |
Sbjct 717 CG-TTCCTTCCA-TATTCCATCGTGGA-GAACCGGATACGAAGCTTCTT--TTCGCGGAA 771
Query 802 GAT-GATAAGATCAATCGCTTGACCTTAATATCAGGGACAAAACAAACAATCTCAGTTTA 860
||| | ||||| ||| || ||| |||| |||| ||||| || ||||||||||||||||
Sbjct 772 GATAG-TAAGAAGAATTGCCTGATCTTAGTATCGGGGACGAAGGAAACAATCTCAGTTTA 830
Query 861 CACATTACTCGGGAATCTC-AAATGGGGTCTCGCTAGGCGGATCAAGAACGTATCTCTGA 919
|||| || || |||| || ||||||| ||| | |||| |||| |||||||| | |||
Sbjct 831 CACACTAGTCAAGAAT-TCCAAATGGGACCTCACCAGGCAGATCGCGAACGTATATATGA 889
Query 920 AAGAAA-ATGAG-TTGAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTG 977
| ||| | ||| || | |||| | ||||| ||| ||| |||||| ||||| |||||
Sbjct 890 ACGAAGGA-GAGCTTTTACACTGGCATTTGGTTATGTGCGACGGCAAGTGTCTTGTGGTG 948
Query 978 AGGGAGAAGAAAAAGAAT-CGT-TTAAATGGTGTAGTTCATGTGTACGACATGGAAACTA 1035
||||||| ||| || | | | | ||| |||||| ||||||||||||||| ||||| |||
Sbjct 949 AGGGAGATGAAGAATATTACTTGTTA--TGGTGTGGTTCATGTGTACGACTTGGAAGCTA 1006
Query 1036 ACAGTTGGGGAGTTTTAGGGTCGA 1059
||| ||||||||||| ||||||||
Sbjct 1007 ACACTTGGGGAGTTTCAGGGTCGA 1030
> Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1
Length=1674
Score = 326 bits (176), Expect = 3e-88
Identities = 422/537 (79%), Gaps = 32/537 (6%)
Strand=Plus/Plus
Query 690 GTTGAGAAACGACGGGAGCATCATAGC-TTTCAATCCCGAGACAGAGCAAGCACGCTTGA 748
|||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1155 GTTGAGAAACGATGGGAGTATCATAGCGTTT-AATCCCGAGACAGAGCAAGCACGCTTGA 1213
Query 749 TTCCTTCCGGT-TTTCATCAGGAAGTACCGGATATGAAACTGTTACTTGCG--GCAGATG 805
|| ||||| | |||||||| || ||| || ||||||||||| || || ||||| |
Sbjct 1214 TTGCTTCCA-TATTTCATCAA-AA--ACCAGAGATGAAACTGTT--TTCCGCTGCAGACG 1267
Query 806 ATAAGATCAATCGCTTGACCTTAATATCAGGGACAAAACAA-ACAATCT-CAGTTTACAC 863
||||| | |||||||||||||||||||| ||||| | || | ||| | ||||||| ||
Sbjct 1268 ATAAGTTGAATCGCTTGACCTTAATATCGGGGACGGGAGAAGA-AAT-TACAGTTTATAC 1325
Query 864 ATTACTCGGGAATCTC-AAATGGGGTCTCGCTAGGCGGATCAAGAACGTATCTCTGAAAG 922
| |||||| ||| || |||||| ||||| |||| |||||||||||||||| |||| |
Sbjct 1326 ACTACTCGAAAAT-TCCAAATGGACCCTCGCCAGGCAGATCAAGAACGTATCTATGAAGG 1384
Query 923 AAAATGAG-TTGAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTGAGGG 981
||| ||| ||| ||| |||||||| |||||||||||||||||| ||| |||||||||
Sbjct 1385 AAAGTGAACTTGTATGTTGGAACATTGTTGTGTACGATGGCAAGAATCTAGTGGTGAGGG 1444
Query 982 AGAAGAAAAAGAATCGTTTAAATGGTGTAGTTCATGTGTACGACATGGAAACTAACAGTT 1041
||| ||| || | | ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1445 AGATGAAG--GA-TAGATTAAAAGGTGTGGTTCATGTGTACGACATGGAGGTTAACAGTT 1501
Query 1042 GGGGAGTTTTAGGGTCGATCATATATACGG-CCGGT-GCAGTCTGGGACTTCTATAAGTT 1099
|||||||| ||||||| | || || | || || | || ||| ||||||||||| ||
Sbjct 1502 GGGGAGTTATAGGGTCAACCACATCTT-GGTCCACTCGC-GTCCCAGACTTCTATAAATT 1559
Query 1100 TACGCCGTCCTGATGTCCTGT-T-GAGGAGGGTGAGCAAAATTATAAAGCGATAGTAGAT 1157
|||||| ||| ||| || | | ||||| | |||||| || | | | | | |||| |
Sbjct 1560 TACGCCCACCT--TGTTCTTTGTCGAGGAAGATGAGCAGCAT-A-AG-GTGGTTGTAGCT 1614
Query 1158 TGTAATGAACATCGCGTCTTCTATCTAATTTCTATTATGAGACTCGTTAATACAACC 1214
| |||||| || | || | |||||||| | | |||||| |||||||| |||| |||
Sbjct 1615 TATAATGACCAACATGTGTCCTATCTAACTGCGATTATGGGACTCGTTGATACGACC 1671
> Ahg911874 jgi|Araly1|911874|Al_scaffold_0001_2128
Length=1137
Score = 255 bits (138), Expect = 4e-67
Identities = 276/340 (81%), Gaps = 20/340 (6%)
Strand=Plus/Plus
Query 697 AACGACGGGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACGCTTGATTCCTTCC 756
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 569 AACGACGAGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACACTTGATTCCTTCC 628
Query 757 GGTTTTC-ATCAGGAAGTACCGGATATGAAACTGTTACTT-GCGGCAGATGATAAGATCA 814
| ||| ||| |||| | | ||||||||| | ||| || ||||| || |||| ||||
Sbjct 629 A-TATTCTATCGGGAA-T-C-GGATATGAAGTTATTA-TTCGCGGCGGAC-ATAATATCA 682
Query 815 ATCGCTTGACCTTAATATCAGGGACAAAACAAACAATCTCAGTTTACACATTACTCGGGA 874
|||| ||||||||| ||| ||||| ||| ||||||||||||||||| || ||| | ||
Sbjct 683 ATCGTTTGACCTTATTATTGGGGACGAAAGAAACAATCTCAGTTTACGCACTACGCAAGA 742
Query 875 ATCTCAAA-TGGGGTC-TCGCTAGGCGGATCAAGAACGTATCTCTGAAAGAAAATGAGT- 931
|| || || ||| || | ||||||| |||||||||||||||| || |||| ||| | |
Sbjct 743 AT-TCCAAGTGGA-TCCTTGCTAGGCAGATCAAGAACGTATCTATGGAAGATAAT-ATTC 799
Query 932 T-GAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTGAGGGAGAAGAAAA 990
| ||| ||||||||||||||| ||||||||||||| |||| |||||||||||| |||
Sbjct 800 TTGAACGCTGGAACATGGTTGCATACGATGGCAAGCATCTTGTGGTGAGGGAGATGAAG- 858
Query 991 AGAATCGTTTAA-ATGGTGTAGTTCATGTGTACGACATGG 1029
|| | | |||| | | ||| |||| | | ||||||||||
Sbjct 859 -GA-TAGATTAAGA-GTTGTGGTTCCTTTTTACGACATGG 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5