BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20370.1
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921000 jgi|Araly1|921000|scaffold_102281.1 1301 0.0
Ahg472264 jgi|Araly1|472264|fgenesh2_kg.1__2218__AT1G20370.1 1157 0.0
Ahg476762 jgi|Araly1|476762|fgenesh2_kg.2__1892__AT1G76120.1 346 4e-94
> Ahg921000 jgi|Araly1|921000|scaffold_102281.1
Length=1757
Score = 1301 bits (704), Expect = 0.0
Identities = 796/841 (95%), Gaps = 3/841 (0%)
Strand=Plus/Plus
Query 44 AGTGGTGAAAATGGAGAATCAAGAGCCTGATATCGAGAAATTGCCTCGAGACGATGTTCC 103
||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||
Sbjct 11 AGTGGTGAAAATGGAGAATCAGGAGCCGGAAATCGAGAAATTGCCTCAAGACGATGTTCC 70
Query 104 TGATAGAGAACCAGACCATAAGAAGCTCAAGATTTCGACCACCGGCCAGGAAACTGATTC 163
|||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 71 TGATCGAGAACCAGACCAGAAGAAGCTCAAGATTTCAACTACCGGCCAGGAAACTGATTC 130
Query 164 CTCGGCTGTTACCACCGGCGGAAGCAATGTCGCTGAGCGTAGAGCGCCGAAATACAGACG 223
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 131 CTCGGCTGTTACCGCCGGCGGAAGCAACGTCGCTGAGCGTAGACCGCCGAAATACAGACG 190
Query 224 CCGGAAAGTCGCAATCGTGTTTGCGTTCTGCGGAGTAGGGTATCAGGGAATGCAAAAGAA 283
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 191 CCGGAAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAA 250
Query 284 TCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAGAGGCTTTGTTCCATGCCGGAGCAGT 343
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 251 TCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCGTTGTTCCATGCCGGAGCCGT 310
Query 344 ACCTGATGCTGATCGGAACAAACCAAGAAATTACGAATGGGCACGATCCGCTAGAACTGA 403
|||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 311 ACCTGAGGCTGATCGGAACAAACCAAGAAATTACGAATGGGCACGATCCGCCCGTACCGA 370
Query 404 TAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTCTATGTTGATCCGCCTGG 463
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 371 TAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTATGTTGATCCGCCTGG 430
Query 464 ATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGGTACAAGCG 523
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 431 ATTTGTGGAGCGTCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGATACAAGCG 490
Query 524 TGTTGCACCGTCGTTTAGCTCCAAAAAATTCTGTGATCGGAGGAGGTATGTGTATCTAAT 583
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 491 TGTTGCGCCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAAT 550
Query 584 CCCGGTTTTTGCTTTGGATCCATGCGTACATGGTGAAGCTGAGATGGTTAGAACGGATTT 643
|| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 551 TCCAGTTTTTGCTCTGGATCCATGCGTACATAGTGAAGCTGAGATGGTTAGAACGGATTT 610
Query 644 AGGTTACGAATATGTCAAATGTGTAGAGTGCTCTGAGAAAGGCTATAAGATTCCACTTGG 703
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 611 AGGTTACGAATATGTCAAATGTGTTGAGTGCTCTGAGAAAGGCTACAAGATTCCAGTTGG 670
Query 704 TGTTATGGGTAAAGACACTGATTGTTGTGATACAAAATCATTGGAGATTCAGTCAGACAT 763
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 671 TGTTATGGGTAAAGACACTGATTGT-G--ATACAAAATCATTGGAGATTCAGTCAGACAT 727
Query 764 TTCGTCGAGCACCTGTGATGCAATAGGAGCTGATGTCAAGTGTGAAACTTTGAGCTCTAG 823
||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 728 TTCGTCGAGCAACTTTGATGCATTAGGAACTGATGTCAAGTGTGAAACTTTGAGCTCTAG 787
Query 824 TGTACCTAGTGCAGAAAATAACTTAAACTCAGAAGTTCTAGATGGGGCTGATGTATCTGC 883
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGTACCTAATGTAGAAAGTAACTTAAACTCAGAAGTTCTAGATGGGGCTGATGTATCTGC 847
Query 884 T 884
|
Sbjct 848 T 848
Score = 1127 bits (610), Expect = 0.0
Identities = 776/848 (92%), Gaps = 43/848 (5%)
Strand=Plus/Plus
Query 910 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGAAGGAGAAGACATGACTA 969
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 919 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGGAGGAGGAGACATGAC-- 976
Query 970 AAAGCGAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAGGAGAGGTTTAACAGAATACTAA 1029
| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 977 --A--GAGAGCAAGTTCTGTTATGGAGAGAAGGAAATGGAGAGGTTTAACAGAATTCTAA 1032
Query 1030 GCTATTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1089
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1033 GCTGTTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACAAAAGCAGCAGACC 1092
Query 1090 CAGCTGCGAATCGTTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1149
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1093 CAGCTGCGAATCGCTACATTCTCTCTTTCAACGCAAACACAGTGATTAATCTCGATGGAA 1152
Query 1150 AAGATTTTGTCAAATGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1209
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AAGATTTTATCAAGTGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1212
Query 1210 TGATTGGACTTGCTGTTGCTA-TCATGAGGAACTATGCTCCTGAATCACTGATCGAAGCT 1268
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||
Sbjct 1213 TGATTGGACTTGCTGTTGC-AGTCATGAGGAACTATGCACCTGAATCACTGATCGAAACT 1271
Query 1269 TCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1331
Query 1329 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1391
Query 1389 ATGGAAGAGTACAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1448
||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 1392 ATGGAAGAGTACAAGGAAGTAGCTGAAGAATTCAAATGGAAGCATGTTTACTCACATATT 1451
Query 1449 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1508
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1452 GGCTCAGCTGAAGAAAAAGATGGAGCTGTGGCTATTTGGTTGCATTCTCTGAACCAGAGA 1511
Query 1509 AACTATCCTGATCTACGAAGCAATGAATACCAACCGGATGAAGTCATTGTCTATAAGAAG 1568
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1512 AACTATCCTGATCTACGATGCAATGAATACAAACCGGATGAAGTCATTGTCTATAAGAAG 1571
Query 1569 A-T--TG--G----TGAAG----CCT-C-TG-A-AGAAAATATCCA-TG-AAG-G----C 1604
| | || | ||||| | | || | ||||||| | || || ||| | |
Sbjct 1572 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAGAGAAAAT-TACAGTGAAAGAGAACAC 1630
Query 1605 -AAT-G--CT---GAGCTATTCGTTGTCGATAAGGTGAATGATGAAACCTCTGAAGGAAC 1657
||| | || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1631 TAATGGCACTGCAGAGCTATTCGTTGCCGATAAGGTGAATGATGAAACCTCTGAAGGAAC 1690
Query 1658 GACTATGGAAGAGAGGACCACACTAGAGGAGAAGGCAACAGGG-TGAAGCCGCTTTT-AT 1715
| ||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||
Sbjct 1691 AATTATGGAAGAGAGGACTACACTAGACGAGAAGGCAAC-GGAATGAAGCCGCTTTTTAT 1749
Query 1716 CTACTGCG 1723
||||||||
Sbjct 1750 CTACTGCG 1757
> Ahg472264 jgi|Araly1|472264|fgenesh2_kg.1__2218__AT1G20370.1
Length=1934
Score = 1157 bits (626), Expect = 0.0
Identities = 666/686 (97%), Gaps = 0/686 (0%)
Strand=Plus/Plus
Query 19 TTAATCGTAGCAAAGAACTACACTCAGTGGTGAAAATGGAGAATCAAGAGCCTGATATCG 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAATCGTAGCAAAGAACTACACTCAGTGGTGAAAATGGAGAATCAAGAGCCTGATATCG 60
Query 79 AGAAATTGCCTCGAGACGATGTTCCTGATAGAGAACCAGACCATAAGAAGCTCAAGATTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAATTGCCTCGAGACGATGTTCCTGATAGAGAACCAGACCATAAGAAGCTCAAGATTT 120
Query 139 CGACCACCGGCCAGGAAACTGATTCCTCGGCTGTTACCACCGGCGGAAGCAATGTCGCTG 198
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 121 CGACCACCGGCCAGGAAATTGATTCCTCGGCTGTTACCGCCGGCGGAAGCAACGTCGCTG 180
Query 199 AGCGTAGAGCGCCGAAATACAGACGCCGGAAAGTCGCAATCGTGTTTGCGTTCTGCGGAG 258
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 181 AGCGTAGAGCGCCGAAATACAGACGCCGGAAAGTCGCAATCATGTTTGCGTTTTGCGGAG 240
Query 259 TAGGGTATCAGGGAATGCAAAAGAATCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAG 318
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAGGCTATCAGGGAATGCAAAAGAATCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAG 300
Query 319 AGGCTTTGTTCCATGCCGGAGCAGTACCTGATGCTGATCGGAACAAACCAAGAAATTACG 378
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AAGCTTTGTTCCATGCCGGAGCAGTACCTGAGGCTGATCGGAACAAACCAAGAAATTACG 360
Query 379 AATGGGCACGATCCGCTAGAACTGATAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTG 438
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 361 AATGGGCACGATCCGCCCGTACCGATAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTG 420
Query 439 GTCGTTTCTATGTTGATCCGCCTGGATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATC 498
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCGTTTTTATGTTGATCCGCCTGGATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATC 480
Query 499 AGATTCGTGTGTTTGGGTACAAGCGTGTTGCACCGTCGTTTAGCTCCAAAAAATTCTGTG 558
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 481 AGATTCGTGTGTTTGGGTACAAGCGTGTTGCACCGTCGTTTAGCTCCAAGAAATTATGTG 540
Query 559 ATCGGAGGAGGTATGTGTATCTAATCCCGGTTTTTGCTTTGGATCCATGCGTACATGGTG 618
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 541 ATCGGAGGAGGTATGTGTATCTAATTCCGGTTTTTGCTTTGGATCCATGCGTACATAGTG 600
Query 619 AAGCTGAGATGGTTAGAACGGATTTAGGTTACGAATATGTCAAATGTGTAGAGTGCTCTG 678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 601 AAGCTGAGATGGTTAGAACGGATTTAGGTTACGAATATGTCAAATGTGTTGAGTGCTTTG 660
Query 679 AGAAAGGCTATAAGATTCCACTTGGT 704
|||||||||||||||||||| |||||
Sbjct 661 AGAAAGGCTATAAGATTCCAGTTGGT 686
Score = 1142 bits (618), Expect = 0.0
Identities = 670/694 (97%), Gaps = 8/694 (1%)
Strand=Plus/Plus
Query 910 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGAAGGAGAAGACATGACTA 969
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 892 AAGAATCGAATATTTTGGCTAAGGAAGAGATGAACAATGGGGAAGGAGGAGACATGAC-- 949
Query 970 AAAGCGAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAGGAGAGGTTTAACAGAATACTAA 1029
| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 950 --A--GAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAAGAGAGGTTTAATAGAATTCTAA 1005
Query 1030 GCTATTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1089
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1006 GCTATTATGTTGGTTCACATAACTTTCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1065
Query 1090 CAGCTGCGAATCGTTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1149
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CAGCTGCGAATCGCTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1125
Query 1150 AAGATTTTGTCAAATGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1209
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AAGATTTTGTCAAGTGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1185
Query 1210 TGATTGGACTTGCTGTTGCTA-TCATGAGGAACTATGCTCCTGAATCACTGATCGAAGCT 1268
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||
Sbjct 1186 TGATTGGACTTGCTGTTGC-AGTCATGAGGAACTATGCACCTGAATCACTGATCGAAACT 1244
Query 1269 TCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1328
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1245 GCTTTCAAGAAGGATGTGAGAATCAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1304
Query 1329 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1364
Query 1389 ATGGAAGAGTACAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1448
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ATGGAAGAGTTCAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1424
Query 1449 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1484
Query 1509 AACTATCCTGATCTACGAAGCAATGAATACCAACCGGATGAAGTCATTGTCTATAAGAAG 1568
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1485 AACTATCCTGATCTACGAAGCAATGAATACAAACCGAATGAAGTCATTGTCTATAAGAAG 1544
Query 1569 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAG 1602
||||||||||||||||||||||||||||||||||
Sbjct 1545 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAG 1578
Score = 503 bits (272), Expect = 2e-141
Identities = 313/332 (94%), Gaps = 5/332 (2%)
Strand=Plus/Plus
Query 1602 GGCAATGCTGAGCTATTCGTTGTCGATAAGGTGAATGATGAAACCTCTGAAGGAACGACT 1661
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1608 GGCAATGCAGAGCTATTCGTTGTCGATAAGGTGAATGATGAAACTTCTGAAGGAACGATT 1667
Query 1662 ATGGAAGAGAGGACCACACTAGAGGAGAAGGCAACAGGGTGAAGCCGCTTTTATCTACTG 1721
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1668 ATGGAAGAGAGGACCACACTAGACGAGAAGGCAACTGGGTGAAGCCGCTTTTATCTACTG 1727
Query 1722 CGGATCACAGGATTAAGGTGGAAGCATCAAGCTTCACCCGCAGGTCCAAACTGGACTAGT 1781
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1728 CGGATCACTGGATTAAGGTGGAAGCATCAAGCTTCACCCGCAGGTCCAAACCGGACTAGT 1787
Query 1782 GAGCCAGATGAGTACCATTTGGACATTTGTTTCAGTGTGTCCTTTTGAGTTTTGTCTCTC 1841
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1788 GAGCCAGATGAGTAACATTTGGACATTTGTTTCAGTGTGTCCTTT-GAGTTTTGTCTCTC 1846
Query 1842 ATGACAAAATTTTGGAAACTCAAGTAATGAATGTGTTACCATTGTGACATTTTGATCTTA 1901
|||||||||||||||||||| |||| ||| ||| | | |||||||||||||||||||||
Sbjct 1847 ATGACAAAATTTTGGAAACTTAAGTCATG--TGT-T-AGCATTGTGACATTTTGATCTTA 1902
Query 1902 TTATAATGTTATCGAATAAGTATTGGCTATGC 1933
| ||||| ||| ||||||||||||||||||||
Sbjct 1903 TAATAATTTTACCGAATAAGTATTGGCTATGC 1934
Score = 200 bits (108), Expect = 3e-50
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 750 ATTCAGTCAGACATTTCGTCGAGCACCTGTGATGCAATAGGAGCTGATGTCAAGTGTGAA 809
||||||||||||||||||| ||||| || ||||||| ||||| |||||||||||||||||
Sbjct 687 ATTCAGTCAGACATTTCGTTGAGCAACTTTGATGCATTAGGAACTGATGTCAAGTGTGAA 746
Query 810 ACTTTGAGCTCTAGTGTACCTAGTGCAGAAAATAACTTAAACTCAGAAGTTCTAGATGGG 869
|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 747 ACTTTGAGCTCTAGTGTACCTAATGTAGAAAGTAACTTAAACTCAGAAGTTCTAGATGTG 806
Query 870 GCTGATGTATCTGCT 884
|||||||||||||||
Sbjct 807 GCTGATGTATCTGCT 821
> Ahg476762 jgi|Araly1|476762|fgenesh2_kg.2__1892__AT1G76120.1
Length=1642
Score = 346 bits (187), Expect = 4e-94
Identities = 470/602 (78%), Gaps = 38/602 (6%)
Strand=Plus/Plus
Query 243 TTTGCGTTCTGCGGAGTAGGGTATC-AGGGAATGCAAAAGAATCCCGGCGCCAAAACCAT 301
||||| || ||||| ||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 261 TTTGCCTTTTGCGGTGTAGGATACCAAGGG-ATGCAAAAGAATCCCGGCGCCAAAACCAT 319
Query 302 TGAAGGCGAGCTCGAAGAGGCTTTGTTCCATGCCGGAGCAGTACCTGA-TGC-TGATCGG 359
|||||||||||| ||||| ||| |||||||||||||||| ||||| || | | | | ||
Sbjct 320 TGAAGGCGAGCTAGAAGAAGCTCTGTTCCATGCCGGAGCTGTACCAGAGTCCATTAGAGG 379
Query 360 AACAAACCAAGAAAT-TACGAATGGGCACGATCCGCTA-GAACTGATAAAGGAGTGAGTG 417
||| |||| || | ||||| | |||||||| || | | || ||||||||||| ||||
Sbjct 380 --CAAGCCAA-AACTATACGATTTCGCACGATCGGC-ACGGACCGATAAAGGAGTTAGTG 435
Query 418 CGGTGGGACAAGTGGTTTCTGGTCGTTTCTATGTTGATCCGCCTGGATTTGTGGAGCGGC 477
| ||||||||||| ||||| ||||| ||| | |||||||| |||||||| ||||| || |
Sbjct 436 CTGTGGGACAAGTAGTTTCCGGTCGATTCAACGTTGATCCACCTGGATTCGTGGATCGTC 495
Query 478 TCAATTCGAAGCTCCCTGATCAGATTCGTG-TGTTTGGGTACAAGCGTGTTGCACCGTCG 536
||||||| || |||||| |||||||| | | | || ||||| |||| |||| | ||||||
Sbjct 496 TCAATTCAAATCTCCCTAATCAGATTAG-GATCTTCGGGTATAAGCATGTTACGCCGTCG 554
Query 537 TTTAGCTCCAAAAAATTCTGTGATCGGAGGAGGTATGTGTATCTAATCCCGGTTTTTGCT 596
|||||||||||||| ||||| ||||| || |||||||||||||| | || || ||||||
Sbjct 555 TTTAGCTCCAAAAAGTTCTGCGATCGAAGAAGGTATGTGTATCTGCTTCCAGTGTTTGCT 614
Query 597 -TTGGATCCA-TG-CGTA-CATGGT-GA-AG-CTG-AGATGGTTAGAACGGATTTAGGTT 648
||| ||||| | || | | || | || | | | | |||| ||| || | |||
Sbjct 615 CTTG-ATCCAATCTCGCATCGTGATAGAGAAACAGTA-ATGGCTAGTTTGGGTCCAGGAG 672
Query 649 ACGAATATGTCAAATGTGTAGAGTGCTCTGAGAAAGG-CTATAAGATTCCA---CTTG-G 703
| |||||||| || ||| | |||||||| |||| ||| | |||||||||| |||| |
Sbjct 673 AGGAATATGTTAAGTGTTTTGAGTGCTCGGAGAGAGGTCG-TAAGATTCCAGGTCTTGTG 731
Query 704 TGTTATGGGTAAAGACACTGATTGTTGTGATACAAAATCATTGGAGATTCAGTCAGACAT 763
|| || || |||| || | | |||| ||| ||||||||||| |||||||||||||
Sbjct 732 GGTAATTGG-AAAGGTACCAACT-TTGT--TACTAAATCATTGGATTTTCAGTCAGACAT 787
Query 764 TTCGTCGAGCACCTGT-GATGCAAT-AGGAGCTGATGTCAAG-TGTGAAACTTTGAGCTC 820
|| ||||| || || | | |||| | || | ||||||||||| | |||| ||||||| ||
Sbjct 788 TTTGTCGAACAACTCTAG-TGCATTTAGAA-CTGATGTCAAGAT-TGAAGCTTTGAGTTC 844
Query 821 TA 822
||
Sbjct 845 TA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74123616770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5