BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20380.1
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472267 jgi|Araly1|472267|fgenesh2_kg.1__2221__AT1G20380.1 3753 0.0
Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1 1635 0.0
Ahg922207 jgi|Araly1|922207|scaffold_103488.1 372 7e-102
> Ahg472267 jgi|Araly1|472267|fgenesh2_kg.1__2221__AT1G20380.1
Length=2268
Score = 3753 bits (2032), Expect = 0.0
Identities = 2190/2268 (97%), Gaps = 4/2268 (0%)
Strand=Plus/Plus
Query 1 ATGGGATCTCTCCCTGCGTTTGAAGAGCGGTTGCAGTATCCAACGGCGAGGCGTGATGAG 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGATCTCTCTCGGCGTTTGAAGAGCGGTTGCAGTATCCAACGGCGAGGCGGGATGAG 60
Query 61 TCCGTCGTTGAAGATTATCACGGCGTTAAAGTCTCCGATCCTTACCGCTGGTTGGAAGAT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCCGTCGTTGAAGATTATCACGGCGTTAACGTCTCCGATCCTTACCGCTGGTTGGAAGAT 120
Query 121 CCTGACGCTGAAGAAGTGAAAGAATTTGTAGAGAAGCAAGTGCAATTGTCAGATTCAGTG 180
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 121 CCTGACGCTGAAGAAGTGAAAGAATTTGTAGAGAAACAAGTGAAATTGTCAGAATCAGTG 180
Query 181 CTCAAAAGTTGCGAAACGAAGGAAAAGCTTCATGACAAATTCACAAAGTTTATTGATTAT 240
||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 181 CTCAAAACTTGCGAAACGAAAGAAAAGCTTCATGACAAATTCACAGAGTTTATCGATTAT 240
Query 241 CCTCGTTTCGATACGCCCTTTAAGCGAGGGAACAGCTACTTTTACTTCCATAACTCAGGT 300
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 241 CCTCGTTACGATACGCCCTTTAAGCGAGGGAACAACTTCTTTTACTTCCATAACTCAGGT 300
Query 301 CTTCAAGCTCAGAGTGTGCTTCATGTTCAGGATGATTTGGAGTCTGAAGCAGAGATCTTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 CTTCAAGCTCAGAGTGTGCTTCATGTTCAGGATGATTTGGAGTCTGAAGCAGAGGTCTTG 360
Query 361 CTTGATCCTAATACTCTTAGTGATGATGGAACAGTTTCTTTAAACACTTTATCTATTAGT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CTTGATCCTAATACTCTTAGTGATGATGGAACCGTTTCTTTAAACACTTTATCTATTAGT 420
Query 421 GAGGATGCTAAGTATTTGGCTTATGGCCTTAGCTCTAGTGGTAGTGATTGGGTTACTATT 480
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 421 GAGGATGCTAAGTATTTGGCTTATGGGCTTAGCTCCAGTGGTAGTGATTGGGTTACAATT 480
Query 481 AAAGTGATGAAGATTGAAGATAAGAAAGTGGAACCTGATTCTTTATCTTGGGTTAAGTTT 540
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 AAAGTGATGAAGATTGAAGATAAGAAAGTGGAGTCTGATTCTTTATCTTGGGTTAAGTTT 540
Query 541 AGTGGGATCACATGGACACATGATGGGAAAGGTTTTTTCTACAGTCGCTATCCAGCTCCA 600
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTGGAATTACATGGACACATGACGGGAAAGGTTTTTTCTACAGTCGCTATCCAGCTCCA 600
Query 601 CGA-GAGGGAGAGAAGATAGATGCTGGTACAGAGACTAATTCTAACCTTTACCATGAGTT 659
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 C-AGGAGGGAGAGAAGATAGATGCTGGTACAGAGACTAATTCTAACCTTTACCATGAGTT 659
Query 660 ATACTACCATTTCCTTGGGACTGATCAATCCGAAGATGTTTTGTGTTGGAGAGACCAAGA 719
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATACTACCATTTTCTAGGGACGGATCAATCCGAAGATGTTTTGTGTTGGAGAGACCAAGA 719
Query 720 TAATCCCAAACATATGTTCGGATCCAAAGTCACTGATGATGGGAAGTACTTAATCATGTC 779
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 TAATCCCAAACATATGTTTGGATCTAAAGTCACTGATGATGGGAAGTACTTAATCATGTC 779
Query 780 AATTGAAGAAGGTTGTGACCCTGTAAACAAGGTTTATCATTGTGATCTCTCATTACTTCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 AATTGAAGAAGGTTGTGACCCTGTAAACAAGGTTTATCATTGTGATCTCTCATCACTTCC 839
Query 840 TAAAGGTCTAGAAGGTTTTAGAGGAAGCAACACTTTACTTCCATTTGTTAAGCTTATTGA 899
||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 840 TAAAGGTCTAGAAGGTTTTAGAGGAAGCAACGCTCTACTTCCATTTGTTAAGCTTATCGA 899
Query 900 CACTTTTGACGCACAATACATTGCTATCGCAAACGACGAGACATTGTTTACTTTCTTAAC 959
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 900 CACATTTGACGCACAATACATTGCTATCGCAAACGATGCGACATTGTTTACTTTCTTAAC 959
Query 960 CAACAAAGATGCCCCAAAGTACAAAGTAGTTCGGGTTGACT-TGAAGGAACCGAGCAGTT 1018
||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 960 CAACAAAGATGCCCCAAAGTACAAATTAGTTCGGGTTGA-TCTGAAGGAACCGAGCAGTT 1018
Query 1019 GGACTGATGTTATCGCTGAACATGAAAAGGATGTTCTCTCAACAGCTTCTGCAGTTAATG 1078
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGACTGATGTTATCACTGAACATGAAAAGGATGTTCTCTCAACAGCTTCTGCAGTTAATG 1078
Query 1079 GAGACCAACTGGTTGTTAGCTACATGAGTGATGTAAAACACATCCTGCAGATTAGGGACT 1138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1079 GAGATCAACTGGTTGTTAGCTACATGAGTGATGTAAAACACATCCTGCAGATTAGAGACT 1138
Query 1139 TGAAATCCGGTTCCTTGCTTCATGGATTACCTGTAGATATTGGCTCGGTATGTGGAGTTT 1198
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1139 TGAAATCTGGTTCCTTGCTTCATAGATTACCTGTAGATATTGGCTCGGTATGTGGTGTTT 1198
Query 1199 TTGCTCGGCGTAAAGACACCACGTTTTTCTTTAGGTTCACAAGCTTCCTTACACCTGGCG 1258
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1199 TTGCTCGGCGTAAAGACACCACCTTTTTCTTTAGGTTTACAAGTTTCCTTACACCTGGCG 1258
Query 1259 TCATTTACATATGTGACTTATCCCATGAAGCTCCAGAAGTAACGGTATTTCGTGAAATCG 1318
| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 TGATTTACAAATGTGACTTATCCCATGAAGCTCCAGAAGTTACGGTATTTCGTGAAATCG 1318
Query 1319 GTGTACCTGGATTCGATAGAACTGCATTTCAAGTCACTCAGGTCTTTTATCCGAGTAAGG 1378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTGTACCTGGATTAGATAGAACTGCATTTCAAGTCACTCAGGTCTTTTATCCGAGTAAGG 1378
Query 1379 ACGGAACAGATATACCGATGTTTATAGTGGCTAGAAAAGATATAAAGCTAGATGGATCAC 1438
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACGGAACAGAGATACCAATGTTTATAGTGGCTAGAAAAGATATAAAGCTAGATGGATCAC 1438
Query 1439 ACCCATGTTTGCTCTATGCATATGGAGGGTTTAGCATAAGCATGACGCCGTTTTTCAGCG 1498
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1439 ACCCATGTTTGCTCTATGCATATGGAGGGTTTAGCGTAAGCATGACGCCGTTTTTCAGCG 1498
Query 1499 CGACCCGTATTGTGCTTGGTAGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCGTG 1558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGACCCGTATTGTGCTTAGTAGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCGTG 1558
Query 1559 GTGGTGGTGAGTATGGTGAGGAATGGCATAAATCTGGTGCTCTTGCCAATAAGCAGAATT 1618
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1559 GTGGTGGTGAGTATGGTGAGGAATGGCATAAATCTGGCGCTCTTGCCAATAAGCAGAATT 1618
Query 1619 GCTTCGATGATTTCATCTCCGGGGCTGAGTATCTGGTTTCAGCTGGTTATACACAACCGA 1678
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1619 GCTTCGATGATTTCATATCTGGGGCTGAGTATCTGGTTTCTGCTGGTTATACCCAACCGA 1678
Query 1679 GGAAACTTTGTATCGAAGGTGGTAGTAACGGTGGTATTCTAGTAGGGGCTTGCATTAATC 1738
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GAAAACTTTGTATCGAAGGTGGTAGTAACGGTGGTATTCTAGTAGGGGCTTGCATTAATC 1738
Query 1739 AGAGACCGGATCTCTTTGGGTGTGCTCTGGCTCATGTTGGGGTCATGGACATGCTCCGGT 1798
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1739 AGAGACCGGATCTCTTTGGTTGTGCTCTCGCTCATGTTGGGGTCATGGACATGCTCCGGT 1798
Query 1799 TTCACAAGTTTACCATAGGACATGCTTGGACTTCTGAATTTGGTTGTTCTGACAAGGAAG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TTCACAAGTTTACCATAGGACATGCTTGGACTTCTGAATTTGGTTGTTCTGACAAGGAAG 1858
Query 1859 AGGAGTTCCATTGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAAC 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGGAGTTCCATTGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAAC 1918
Query 1919 AGAAGACAGATCTGTTTTTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCATGACG 1978
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1919 AGAAGACAGATCGGTTTGTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCACGACG 1978
Query 1979 ATAGAGTCGTCCCACTTCATTCTTACAAGTTGCTTGCGACAATGCAATATGAATTAGGTT 2038
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ATAGAGTCGTCCCACTTCATACTTACAAGTTGCTTGCGACAATGCAATATGAATTAGGTT 2038
Query 2039 TGAGTTTAGAGAATAGTCCACAGACGAACCCTATAATTGCTCGAATAGAAGTAAAAGCCG 2098
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2039 TGAGTTTAGAGAATAGTCCACAGACGAACCCTATAATTGCTCGGATAGAAGTAAAAGCCG 2098
Query 2099 GGCATGGAGCAGGACGTCCAACGCAAAAGATGATTGATGAAGCGGCTGATAGATATTCGT 2158
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 2099 GGCATGGAGCAGGACGTCCAACGCAAAAGATGATTGACGAAGCGGCTGATCGATATTCGT 2158
Query 2159 TCATGGCGAAGATGGTGGATGCTTCATGGATCGACTAGAATTTACACAAAGAGATTAGCT 2218
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 2159 TCATGGCGAAGATGGTGGATGCTTCATGGATCGACTAGAACTTACACGAAGAGATTAACT 2218
Query 2219 TTTCTTTCTTGTTATGTTTTAGAGAGAGCTACTATATTATAATTATAC 2266
| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2219 TATCTTTCTTGTTATGTTTTAGAGAGAGCTATTATATTATAATTATAC 2266
> Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1
Length=2548
Score = 1635 bits (885), Expect = 0.0
Identities = 1763/2180 (81%), Gaps = 87/2180 (4%)
Strand=Plus/Plus
Query 50 GGCGTGATGAGTCCGTCGTTGAAGATTATCACGGCGTTAAAG-TCTCCGATCCTTACCGC 108
|||||| ||| |||||||| || || |||||||||| | ||| || ||||| |||||
Sbjct 249 GGCGTGGTGATTCCGTCGTCGATGACTATCACGGCG-TCAAGATCGGAGATCCGTACCGT 307
Query 109 TGGTTGGAAGATCCTGACGCTGAAGAAGTGAAA-GAATTTGTAG-AGAAGCAAGTGCAAT 166
||||| || |||||||| ||||||||||| ||| || ||||| | ||| |||||| |||
Sbjct 308 TGGTTAGAGGATCCTGATGCTGAAGAAGT-AAAGGAGTTTGT-GCTGAACCAAGTGAAAT 365
Query 167 TGTCAGATTCAGTGC-TCAAAAGTTGCGAAACGAAGGAAAAGCTTCATGACA-AAT-TCA 223
|| ||||||| |||| | ||||| |||||||| ||||| |||| || | || ||| | |
Sbjct 366 TGACAGATTCTGTGCTTGAAAAG-TGCGAAACCAAGGAGAAGC-TC-CGTCAGAATATAA 422
Query 224 C-AAAGTTTATTGATTATCCTCGTTTCGATACGCCCTTTAAGCGA-GGGA-ACAGCTACT 280
| ||| |||||||| |||| |||| |||| | || || | || | |||| | || ||||
Sbjct 423 CGAAA-CTTATTGATCATCCGCGTTACGATTCTCCGTTCAGGCAAGGGGATA-AG-TACT 479
Query 281 TTTACTTCCATAACTCAGGTCTTCAAGCTCAGAGTGTGCTTCATGTTCAGGATGATTTGG 340
|||||||||||||| | ||||| || || |||||||||||| || | ||||||||| |||
Sbjct 480 TTTACTTCCATAACACCGGTCTACAGGCCCAGAGTGTGCTTTATATGCAGGATGATCTGG 539
Query 341 AGT-CTGAAG-CAGAGATCTTGCTTGATCCTAATACTCTTAGTGATGATGGAACAGTTTC 398
| | ||| || ||||| | ||||||||||| || |||||||||||||||||||| || |
Sbjct 540 A-TGCTG-AGCCAGAGGTTTTGCTTGATCCGAACACTCTTAGTGATGATGGAACTGTGGC 597
Query 399 TTTAAACA-CTTTATCTATTAGTGAGGATGCTAAGTATTTGGCTTATGGCCTTAGCTCTA 457
||||||| |||| ||| | || |||||||||||||| ||||| ||||| ||||| || |
Sbjct 598 CTTAAACACCTTT-TCTGTCAGCGAGGATGCTAAGTACTTGGCCTATGGTCTTAGTTCAA 656
Query 458 GTGGTAGTGATTGGGTTACTATTAAAG-TGATGAAGATTGAAGATAAGAAAGTGGAACCT 516
||||||| || ||||| || ||| ||| ||||||| || || |||||||||||||| |||
Sbjct 657 GTGGTAGCGACTGGGTGACCATT-AAGCTGATGAATATCGAGGATAAGAAAGTGGAGCCT 715
Query 517 GAT-TCTTTATCTTGGGTTAAGTTTAGTGGGATCACATGGACACATGATGGGAAAGGTTT 575
||| | |||||| ||||||||||||| || || |||||||| || || | ||||| ||
Sbjct 716 GATGT-TTTATCATGGGTTAAGTTTACCGGCATTACATGGACGCACGACAGTAAAGGATT 774
Query 576 TTTCTACAGTCGCTATCCAGCT-CCACGAGAGGGAGAGAAGATAGATGCTGGTACAGAGA 634
|||||| ||||||| |||||| ||| ||| |||||| | || ||||||||||| ||||
Sbjct 775 TTTCTATGGTCGCTACCCAGCTCCCA-AAGAAGGAGAGGATATTGATGCTGGTACTGAGA 833
Query 635 CTAATTCTAACCTTTACCATGAGTTATACTACCATTTCCTTGGGACTGATCAATC-CGAA 693
|||||||||||||||| |||||| | || ||||||||||||||||| |||||||| | ||
Sbjct 834 CTAATTCTAACCTTTATCATGAGCTGTATTACCATTTCCTTGGGACGGATCAATCTC-AA 892
Query 694 GATGTTTTGTGTTGGAGAGACCAAGATAATCCCAAACATATGTTCGGATCCAAAGTCACT 753
||| | || || |||||||| || || ||||||||| ||||||||||| | ||||||||
Sbjct 893 GATATCTTATGCTGGAGAGATCATGAGAATCCCAAATATATGTTCGGAGCTGAAGTCACT 952
Query 754 GATGATGGGAAGTACT-TAATCATG-TCAATTGAAGAAG-GTTGTGACCCTGTAAACAAG 810
|| ||||||||||| | | ||||| | |||| || || ||||||||||||| |||||
Sbjct 953 GACGATGGGAAGTA-TCTGTTCATGAGC-ATTGGAG-AGAGTTGTGACCCTGTCAACAA- 1008
Query 811 GTTTAT-C-ATTGTGATCT--C-TCATTACTTCCTAAAGGTCTAGAAG-GTTTTAGAGGA 864
|||| | | || ||| | | ||||| || || |||||| | || |||| ||||||
Sbjct 1009 -ATTATACTACTGCGATATGACTTCATT--TT-CTGGAGGTCTTG-AGAGTTTCAGAGGA 1063
Query 865 AGCAACACTTTACTTCCATTTGTTAAGCTTATTGACACTTTTGACGCACAATACATTGCT 924
|||| || ||| |||||||| |||||||| ||||||| |||||||| ||||| | || |
Sbjct 1064 AGCAGCAGTTTTCTTCCATTCATTAAGCTTGTTGACACGTTTGACGCTCAATATAGTGTT 1123
Query 925 ATCGCAAACGACGAGACAT-TGTTTACTTTCTTAACCAACAAAGATGCCCCAAAGTACAA 983
||| |||| || ||||| | ||||||||||||| || || ||||||||||| ||||||||
Sbjct 1124 ATCTCAAATGATGAGAC-TCTGTTTACTTTCTTGACAAATAAAGATGCCCCTAAGTACAA 1182
Query 984 AGTAGTTCGGGTTGACT-TGAAGGAACCGAGCAGTTGGACTGATGTTATCGCTGAACATG 1042
| |||| |||||||| | | |||||||| | |||||||||||||||| | | ||||| |
Sbjct 1183 ATTAGTCCGGGTTGA-TCTAAAGGAACCAAACAGTTGGACTGATGTTGTTGAAGAACACG 1241
Query 1043 AAAAGGATGTTC-TCTCAACAGCTTCTGCAGTTAAT-GGAGACCAACTGGTTGTTA-GCT 1099
| ||||||| || | || |||||| |||||| ||| ||| | || ||||| | | |||
Sbjct 1242 AGAAGGATG-TCTTAGCATCAGCTTGTGCAGTCAATGGGA-ATCATCTGGTCG-CATGCT 1298
Query 1100 ACATGAGTGATGTAAAACACATCCTGCAGATTAGGGACTTGAAATCCGGTTCCTTGCTTC 1159
||||||| |||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct 1299 ACATGAGCGATGTAAAGCATATTCTGCAAATTAGGGACTTGAAATCTGGTTCATTGCTTC 1358
Query 1160 ATGGATTACCTGTAGATATTGGCTCGGTATGTGGA-GTTTTTGCTCGGCGTAAAGACACC 1218
| ||||||| |||||||||| || |||| | || |||| ||||||||| || ||||
Sbjct 1359 ACCAATTACCTCTAGATATTGGTTCAGTATCT-GATGTTTCTGCTCGGCGCAAGGACAAT 1417
Query 1219 ACGTTTTTCTTTAGGTTCACAAGCTTCCTTACACCTGGCGTCATTTACATA-TGTGACTT 1277
|| ||||||||||| || || |||||||| || ||||| || ||||||| | ||||||||
Sbjct 1418 ACCTTTTTCTTTAGCTTTACTAGCTTCCTCACTCCTGGTGTGATTTACA-AGTGTGACTT 1476
Query 1278 ATCCCATGAAGCTCCAGAAG-TAACGGTATTTCGTGAAATCGGTGTACCTGGATTCGATA 1336
| || ||||| ||||||||| ||| |||||| || || | |||||| ||||| || |
Sbjct 1477 AGCCAATGAATCTCCAGAAGTTAA-GGTATTCCGGGAGGTTACTGTACCCGGATTTGACA 1535
Query 1337 --GAACTGCATTTCAAGTCACTCAGGTCTTTTATCCGAGTAAGGACGGAACAGATATACC 1394
||| |||||||||| || ||||||||| ||||| || || || |||||| | |||||
Sbjct 1536 GGGAA--GCATTTCAAGCCATTCAGGTCTTCTATCCCAGCAAAGATGGAACAAAGATACC 1593
Query 1395 GATGTTTATAGTGGCTAGAAAA-GATATAAAGCTAGATGGATCACACCCATGTTTGCTCT 1453
|||||||| ||||| | |||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1594 AATGTTTATTGTGGCGA-AAAAGGATATTAAGCTTGATGGATCACACCCATGTTTGCTCT 1652
Query 1454 ATGCATATGGAGGGTTTAGCATAAGCATGACGCCGTTTTTCAGCGCGACCCGTATTGTGC 1513
|||||||||| ||||||| ||||||||| || |||| |||||| || | ||| |||||||
Sbjct 1653 ATGCATATGGCGGGTTTAACATAAGCATAACACCGTCTTTCAGTGCCAGCCGCATTGTGC 1712
Query 1514 TTGGTAGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCGTGGTGGTGGTGAGTATG 1573
|| | | |||||| ||| || ||||| |||||||| || || |||||||| |||||||
Sbjct 1713 TTAGCAAGCATCTCGGTGTTGTTTTCTGCTTTGCAAATATTCGGGGTGGTGGGGAGTATG 1772
Query 1574 GTGAGGAATGGCATAAATCTGGTGCTCTTGCCAATAAGCAGAATTGCTTCGATGA-TTTC 1632
||||||||||||| ||| | ||| | |||||||| |||||||| || |||||||| |||
Sbjct 1773 GTGAGGAATGGCACAAAGCAGGTTCACTTGCCAAAAAGCAGAACTGTTTCGATGACTTT- 1831
Query 1633 ATCTCCGGGGCTGAGTATCTGGTTTCAGCTGGTTATACACAACCGAGGAAACTTTGTATC 1692
|| || ||||| |||||||| || || |||||||||||||||||||| || || |||||
Sbjct 1832 ATTTCTGGGGCAGAGTATCTCGTGTCCGCTGGTTATACACAACCGAGCAAGCTGTGTATT 1891
Query 1693 GAAGGTGGTAGTAACGGTGGTATTC-TAGTAGGGGCTTGCATTAATCAGAGACCGGATCT 1751
|||||||| || || ||||| | || || | || |||||||| |||||| | | | | ||
Sbjct 1892 GAAGGTGGCAGCAATGGTGG-ACTCCTAATCGGTGCTTGCATAAATCAG-G-CAG-ACCT 1947
Query 1752 CTTTGGGTGTGCTCTGGCTCATGTTGGG-GTCATGGACATGCTCCGGTTTCACAAGTTTA 1810
|||||||||||| | |||||||| ||| |||||||||||||| |||||||||||||| |
Sbjct 1948 TTTTGGGTGTGCTTTAGCTCATGT-GGGCGTCATGGACATGCTACGGTTTCACAAGTTCA 2006
Query 1811 CCATAGGACATGCTTGGACTTCTGAATT-TGGTTGTTCTGACAAGGAAGAGGAGTTCCAT 1869
| ||||| ||||| ||||| || || || |||||| || || || ||||||||||| |||
Sbjct 2007 CTATAGGTCATGCCTGGACATCAGA-TTATGGTTGCTCCGAGAATGAAGAGGAGTTTCAT 2065
Query 1870 TGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAACAG-AAGACAGA 1928
|||||||||||||| ||||||||||| |||||||||||||||||||| || || || ||
Sbjct 2066 TGGCTGATAAAGTACTCGCCTCTGCACAATGTGAAGAGGCCATGGGAGCAACAA-ACCGA 2124
Query 1929 TCTGTTTTTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCATGACGATAGAGTCGT 1988
| || ||||||| |||||||||||| | || ||||||||||| || || ||||| ||
Sbjct 2125 TAAATTCATTCAGTATCCATCAACCATGCTATTGACTGCTGATCACGATGACAGAGTTGT 2184
Query 1989 CCCACTTCATTCTTACAAGTTGCTTGCGACAATGCAATATGAATTAG-GTTTGAGTTTAG 2047
|||||||| |||| |||||||||||||| |||| | | | | | || ||||
Sbjct 2185 GCCACTTCACTCTTTGAAGTTGCTTGCGACGTTGCAGCACGTGCT-GTGCACAAGCTTAG 2243
Query 2048 AGAATAGTCCACAGACGAACCCTATAATTGCTCGAATAGAAGTAAAAGCCGGGCATGGAG 2107
|||||||||| ||||||||||| ||||||| ||| || |||||||| || || ||||| |
Sbjct 2244 AGAATAGTCCTCAGACGAACCCCATAATTGGTCGTATTGAAGTAAAGGCTGGCCATGGTG 2303
Query 2108 CAGGACGTCCAACGCAAAAGATGATTGATGAAGCGGCTGATAGATATTCGTTCATGGCGA 2167
| || || ||||| |||||||||||||||||||| |||||| | |||||||||||||| |
Sbjct 2304 CCGGTCGCCCAACCCAAAAGATGATTGATGAAGCCGCTGATCGGTATTCGTTCATGGCAA 2363
Query 2168 AGATGGTGGATGCTTCATGG 2187
|||||||| ||||| |||||
Sbjct 2364 AGATGGTGAATGCTGCATGG 2383
> Ahg922207 jgi|Araly1|922207|scaffold_103488.1
Length=584
Score = 372 bits (201), Expect = 7e-102
Identities = 228/241 (95%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 1459 TATGGAGGGTTTAGCATAAGCATGACGCCGTTTTTCAGCGCGACCCGTATTGTGCTTGGT 1518
||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||| ||
Sbjct 1 TATGGAGGGTTTAGC-TAAGCATGACTCGGTTTTTCAGCGCGACTCGTATTGTGCTTAGT 59
Query 1519 AGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCGTGGTGGTGGTGAGTATGGTGAG 1578
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 AGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCATGGTGGTGGTGAGTATGGTGAG 119
Query 1579 GAATGGCATAAATCTGGTGCTCTTGCCAATAAGCAGAATTGCTTCGATGATTTCATCTCC 1638
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 120 GAATGGCATAAATCTGGCGCTCTAGCCAATAAGCAGAATTGCTTCGATGATTTCATTTCC 179
Query 1639 GGGGCTGAGTATCTGGTTTCAGCTGGTTATACACAACCGAGGAAACTTTGTATCGAAGGT 1698
|||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||
Sbjct 180 GGGGCTGAGTATCTGGTTTCTGCTGATTATACACAACCGAGAAAAATTTGTATCGAAGGT 239
Query 1699 G 1699
|
Sbjct 240 G 240
Score = 357 bits (193), Expect = 2e-97
Identities = 207/214 (97%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1804 AAGTTTACCATAGGACATGCTTGGACTTCTGAATTTGGTTGTTCTGACAAGGAAGAGGAG 1863
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 AAGTTTACCATAAGACATGCTTGGACTTCTGAATTTGGTTGTTCTGACAAGGAAGAGGAG 317
Query 1864 TTCCATTGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAACAGAAG 1923
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 318 TTCCATTGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCTTGGGAACAGAAG 377
Query 1924 ACAGATCTGTTTTTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCATGACGATAGA 1983
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 378 ACAGATCGGTTTGTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCACGACGATAGA 437
Query 1984 GTCGTCCCACTTCATTCTTACAAGTTGCTTGCGA 2017
||||| ||||||||| ||||||||||||||||||
Sbjct 438 GTCGTGCCACTTCATACTTACAAGTTGCTTGCGA 471
Score = 141 bits (76), Expect = 2e-32
Identities = 80/82 (98%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 2049 GAATAGTCCACAGACGAACCCTATAATTGCTCGAATAGAAGTAAAAGCCGGGCATGGAGC 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GAATAGTCCACAGACGAACCCTATAATTGCTCGAATAGAAGTAAAAGCCGGGCATGGAGC 529
Query 2109 AGGACGTCCAACGCAAAAGATG 2130
||| |||||||||||||| |||
Sbjct 530 AGGGCGTCCAACGCAAAATATG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87645653745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5