BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20410.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921003 jgi|Araly1|921003|scaffold_102284.1 2495 0.0
Ahg920999 jgi|Araly1|920999|scaffold_102280.1 1851 0.0
> Ahg921003 jgi|Araly1|921003|scaffold_102284.1
Length=1557
Score = 2495 bits (1351), Expect = 0.0
Identities = 1476/1538 (96%), Gaps = 2/1538 (0%)
Strand=Plus/Plus
Query 25 CTCC-AATTATTCAAAACAGATGTCCGGCGAAAAAGAACCCGTCGCCGTCGAATCAGCCG 83
|||| |||| | | || || ||||||| ||| | || ||||| | ||| ||| ||||| |
Sbjct 4 CTCCAAATT-TCCGAAGCAAATGTCCGCCGACACAGGACCCGCCTCCGGCGACTCAGCTG 62
Query 84 GCTTGCCCAACGGCCTAGTAAGTCATGGTAACTCCAAGACACGGCGCGTATACGAAACAG 143
| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 63 GTTTGCCCAACGGCCTCGTAAGCCATGGTGACTCTAAGACACGGCGCGTATACGAAACAG 122
Query 144 CTCGATCTCTGCATACCGGTGCTGTGAAAGATCTTCTCTCTCTCGGGGTCTGTGAGAGAT 203
|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 123 CTCGATCTCTGCATTCCGGTGCTGTGAAAGATCTTCTATCTCTCGGGGTCTGCGAGAGAT 182
Query 204 GTATTTTCCGATTGGTATCCGTCGAGGCTTTTGATTCCGATATTTCATCAGTCTCGACTT 263
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 183 GTATTTTCCGATTGGTAGCCGTCGAGGCTTTTGATTCCGATATTTCTTCAGTCTCGACTT 242
Query 264 CAACTCTGCGCAGCTGGCTCAAATCCGGTGATGATGAAACTAGTGCATCGGAATCTAGCT 323
||||||| | ||| ||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 243 CAACTCTTCACAGTTGGCTCAAATCCGGTGATGGTGAAACTGGTTCATCGGAATCTAGCT 302
Query 324 GTTCCACAATCTGCATTGTTTGTTTAGGTATATTGCAGTTCGTTTTTTCCGATGTCAAAA 383
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 GTTCCAGAATCTGCATTGTTTGTTTAGGTATATTGCAGTTCGTTTTTTCCGATGCCAAAA 362
Query 384 AAGAGCTGGTGAAATCGGATTCTAGTAGTGATTACGTTGCAAGGATAACGGACTTGGTGA 443
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 363 AAGAGCTGGTGAAATCGGATTCTAGTAGTGATTACGTTTCAAGGATAACGGACTTGGTGA 422
Query 444 AGCAGGATCGTCATGAGTTCGATAGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGCAGGATCGTCATGAGTTCGATAGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCA 482
Query 504 TGGAGAATGAACGTGCACTCTTGTCATACCTTAAAGGAAAGTACAGCACCGAAGTTTGGC 563
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 483 TGGAGAATGAACGTGCACTCTTGTCATACCTTAAAGGAAAGTATAGCACCGAAGTTTGGC 542
Query 564 TGCAGCGCGATAAAATTTCTGTAAAGGATGCCTTGAAAGTTCTACTCTTGGATCAACTTA 623
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 543 TGCAACGCGACAAATTTTCTGTAAAGGATGCTTTGAAAGTTCTACTCTTGGATCAACTTA 602
Query 624 AAGCATCGTTGGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGCATCGTTGGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTA 662
Query 684 AAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAA 722
Query 744 CAGACGCAGAGAATGGATCAAACTGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAAC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGACGCAGAGAATGGATCAAACTGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAAC 782
Query 804 CATGCATCTTTTCAGTTCATTGCAACAGGATGCCTATCTTTTTTAGTGGGAGGTACTTCA 863
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 783 CATGCATCTTTTCAGTTCATTGCAACAGGATGCCTATCTTTTTTAGTGGGAGATACTTTA 842
Query 864 AATACTCCAGAAATGTTAGTCAATCACGATGGATTATTGATGATGAAAGAATGGGGGAAG 923
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 843 AATACTCCAGAAATGTTAGTCAATCCCGATGGATTATTGATGATGAAAGAATGGGCGAAG 902
Query 924 CGTCTGTTGAGGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACA 983
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 903 CGTCTGTTGAGGAGATACTTGGCGGAAACATTCTTCCAGCATGCCTTGGGGATTCGTACA 962
Query 984 AGTTCCATGCTGCTGGCAGAGAAGATATTGATGTACGAATGTTGGGTTCAGGTAGACCTT 1043
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTTCCACGCAGCTGGCAGAGAAGATATTGATGTACGAATGTTGGGTTCAGGTAGACCTT 1022
Query 1044 TCTTGATCGAGGTTCAGAATTCTCGCCAGTTACCGTCTGAACAATCATTGAAGGAAGTTG 1103
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1023 TCTTGATCGAGGTTCAGAATTCTCGCCAGTGCCCGTCTGAACAATCATTGAAGGAAGTCG 1082
Query 1104 AAGAAAAGATAAACAAGTCAGAGAAAAAACTAGTCGGAGTAAAAGACCTTAAATGTATCG 1163
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAGAAAAGATAAACAACTCAGAGAAAAAACTAGTCGGAGTAAAAGACCTTAAATGTATCG 1142
Query 1164 GAAGTCAGTGTTGGGCAATGATGCGCGAGGGAGAAGCGGAGAAGCAGAAGCAGTATGTTG 1223
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1143 GAAGTCAGTGTTGGGCAATGATGCGTGAAGGAGAAGCAGAGAAGCAGAAGCAGTATGTTG 1202
Query 1224 CACTTGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTTCTTGCCTGA 1283
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1203 CACTTGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAGTTTCTTCCCTGA 1262
Query 1284 AAGAATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGG 1343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1263 AAGAATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCATTGG 1322
Query 1344 ACCGTGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACT 1403
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1323 ATCGTGAAAAGATTATACATTGGATGAAAATTGAAAAGATAAAAGGACACGCTCACTACT 1382
Query 1404 TTCTATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATC 1463
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1383 TTCTATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAATTTGTTCATGGAGATC 1442
Query 1464 TTGGTCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAAC 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TTGGTCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAAC 1502
Query 1524 TAGATGTGACTGATGTGAAAATGGGCGACCCATGAATT 1561
||||||||||||||||||||||||||||| ||||||||
Sbjct 1503 TAGATGTGACTGATGTGAAAATGGGCGACTCATGAATT 1540
> Ahg920999 jgi|Araly1|920999|scaffold_102280.1
Length=1552
Score = 1851 bits (1002), Expect = 0.0
Identities = 1060/1089 (97%), Gaps = 0/1089 (0%)
Strand=Plus/Plus
Query 47 TCCGGCGAAAAAGAACCCGTCGCCGTCGAATCAGCCGGCTTGCCCAACGGCCTAGTAAGT 106
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 49 TCCAGCGAAAAAGAACCCGTCGCCGGCGAATCAGCCGGCTTGCCCAACGGCCTAGTAAGT 108
Query 107 CATGGTAACTCCAAGACACGGCGCGTATACGAAACAGCTCGATCTCTGCATACCGGTGCT 166
|||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 109 CATGGTGACTCTAAGACACGGCGCGTATACGAAACAGCTCGATCTCTGCATTCCGGTGCT 168
Query 167 GTGAAAGATCTTCTCTCTCTCGGGGTCTGTGAGAGATGTATTTTCCGATTGGTATCCGTC 226
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 169 GTGAAAGATCTTCTATCTCTCGGGGTCTGCGAGAGATGTATTTTCCGATTGGTAGCCGTC 228
Query 227 GAGGCTTTTGATTCCGATATTTCATCAGTCTCGACTTCAACTCTGCGCAGCTGGCTCAAA 286
||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||
Sbjct 229 GAGGCTTTTGATTCCGATATTTCTTCAGTCTCGACTTCAACTCTTCACAGTTGGCTCAAA 288
Query 287 TCCGGTGATGATGAAACTAGTGCATCGGAATCTAGCTGTTCCACAATCTGCATTGTTTGT 346
|||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 289 TCCGGTGATGGTGAAACTGGTTCATCGGAATCTAGCTGTTCCAGAATCTGCATTGTTTGT 348
Query 347 TTAGGTATATTGCAGTTCGTTTTTTCCGATGTCAAAAAAGAGCTGGTGAAATCGGATTCT 406
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 349 TTAGGTATATTGCAGTTCGTTTTTTCCGATGCCAAAAAAGAGCTGGTGAAATCGGATTCT 408
Query 407 AGTAGTGATTACGTTGCAAGGATAACGGACTTGGTGAAGCAGGATCGTCATGAGTTCGAT 466
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGTAGTGATTACGTTTCAAGGATAACGGACTTGGTGAAGCAGGATCGTCATGAGTTCGAT 468
Query 467 AGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCATGGAGAATGAACGTGCACTCTTG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCATGGAGAATGAACGTGCACTCTTG 528
Query 527 TCATACCTTAAAGGAAAGTACAGCACCGAAGTTTGGCTGCAGCGCGATAAAATTTCTGTA 586
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 529 TCATACCTTAAAGGAAAGTATAGCACCGAAGTTTGGCTGCAACGCGACAAATTTTCTGTA 588
Query 587 AAGGATGCCTTGAAAGTTCTACTCTTGGATCAACTTAAAGCATCGTTGGGCGCTGAATCA 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGGATGCTTTGAAAGTTCTACTCTTGGATCAACTTAAAGCATCGTTGGGCGCTGAATCA 648
Query 647 GATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGT 708
Query 707 GCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAACAGACGCAGAGAATGGATCAAAC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 GCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAACAGACGCAGAGAATGGTTCAAAC 768
Query 767 TGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAACCATGCATCTTTTCAGTTCATTGC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAACCATGCATCTTTTCAGTTCATTGC 828
Query 827 AACAGGATGCCTATCTTTTTTAGTGGGAGGTACTTCAAATACTCCAGAAATGTTAGTCAA 886
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 829 AACAGGATGCCTATCTTTTTTAGTGGGAGATACTTCAAATACTCCAGAAATGTTAGTCAA 888
Query 887 TCACGATGGATTATTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAGGAGATACTTGGT 946
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 889 TCACGATGGATTATTGATGATGAAAGAATGGGAGAAGCGTCTGTTGAGGAGATAATTGGT 948
Query 947 GGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCTGCTGGCAGAGAA 1006
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 GGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCAGCTGGCAGAGAA 1008
Query 1007 GATATTGATGTACGAATGTTGGGTTCAGGTAGACCTTTCTTGATCGAGGTTCAGAATTCT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GATATTGATGTACGAATGTTGGGTTCAGGTAGACCTTTCTTGATCGAGGTTCAGAATTCT 1068
Query 1067 CGCCAGTTACCGTCTGAACAATCATTGAAGGAAGTTGAAGAAAAGATAAACAAGTCAGAG 1126
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CGCCAGTTGCCGTCTGAACAATCATTGAAGGAAGTTGAAGAAAAGATAAACAAGTCAGAG 1128
Query 1127 AAAAAACTA 1135
|||||||||
Sbjct 1129 AAAAAACTA 1137
Score = 710 bits (384), Expect = 0.0
Identities = 408/419 (97%), Gaps = 4/419 (1%)
Strand=Plus/Plus
Query 1168 TCAGTGTTGGGCAATGATGCGCGAGGGAGAAGCGGAGAAGCAGAAGCAGTATGTTGCACT 1227
|||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||
Sbjct 1138 TCAGTGTTGGGCAATGATGCGCTAGGGAGAAGCGGAG-A--A-AAGCAGTATGTTGCACT 1193
Query 1228 TGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTTCTTGCCTGAAAGA 1287
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1194 TGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTCCTTCCCTGAAAGA 1253
Query 1288 ATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGGACCG 1347
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1254 ATTGAAAATCTTGCAGAAGACACCAGTTAGAGTGCTTCACCGACGAAGTCCACTGGACCG 1313
Query 1348 TGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCT 1407
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 TGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTAACTACTTTCT 1373
Query 1408 ATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATCTTGG 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATCTTGG 1433
Query 1468 TCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA 1493
Query 1528 TGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAATGCCCGATGTTCTTC 1586
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1494 TGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAAAGCCCGATGCTCTTC 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5