BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20430.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472271 jgi|Araly1|472271|fgenesh2_kg.1__2225__AT1G20430.1 852 0.0
Ahg920998 jgi|Araly1|920998|scaffold_102279.1 294 4e-79
> Ahg472271 jgi|Araly1|472271|fgenesh2_kg.1__2225__AT1G20430.1
Length=579
Score = 852 bits (461), Expect = 0.0
Identities = 548/588 (93%), Gaps = 13/588 (2%)
Strand=Plus/Plus
Query 2 TTAGACACCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGTTGATCCTCTCACCGGGAA 61
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTAGACATCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGCTGATCCTCTCACCGGGAA 60
Query 62 AGATCCGGCGAAGGCTTTAACCGCTGTTGCTTCTGGATTCTTCGAGAATGTGAAGAAAAA 121
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 61 AGATCCGGCGAAGGCTTTAACAGCTGTAGCGTCTGGATTCTTCGAGAATGTGAAGAAGAA 120
Query 122 CAAGCAAAGCTTCTTCCAGTTCGCCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 181
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGCAAAGCTTCTTCCAGTTCTTCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 180
Query 182 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 240
Query 242 ACAAGATAGTTTGACGGATCGTATGAGTAAAATCAAAAGCGATCTTCTTCATCAAGCATC 301
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 GCAAGATAGTTTGACGGATCGTATGAGTAAAATCAAGAGCGATCTTCTTCATCAAGCTTC 300
Query 302 GATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGTGAAGATAAAAA 361
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 GATTGACTCTACCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGCGACGATAAAAA 360
Query 362 GTGATCGGAGATTTGATTGGTTTGA-GTCAACGAGGTTACCATTTTCTTACTCGTGCGAT 420
|||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| |||
Sbjct 361 GTGAACGGAGATTTGATTGATTTTAAGTCAACGAGGTTACCATTTTCTTACTCGTGTGAT 420
Query 421 G-TTATTGTAGTTCTAAAACACATGTCTCTCTGTCTTAAGATTGGAAGGTTTTGGCGAAT 479
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 421 GGTTATTGTAGTTCTGAAACACATGTCTCTCTGTCTTTAGATTGGAAGGTTTTAGCTAAT 480
Query 480 GAATAAGTAGGGCTTTTAA-GGT-GATATGATTTCAGACAATGGTGTATCGTTTTGACTT 537
|||| ||||||| |||||| ||| ||| ||||| ||||||| |||||||||||| |||||
Sbjct 481 GAATGAGTAGGG-TTTTAAAGGTTGATGTGATT-CAGACAACGGTGTATCGTTT-GACTT 537
Query 538 ATTTGAGAATCTGCTTAGTGAGATCATTAACTTTGTTGTGGCTGAATC 585
||||||||||||| || || | | ||| ||||||||||||||||||
Sbjct 538 ATTTGAGAATCTGTTTCGT-A--T--TTA-CTTTGTTGTGGCTGAATC 579
> Ahg920998 jgi|Araly1|920998|scaffold_102279.1
Length=400
Score = 294 bits (159), Expect = 4e-79
Identities = 165/168 (98%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 218 AGACACTGCTGTTCTCAAGAAGGAACAAGATAGTTTGACGGATCGTATGAGTAAAATCAA 277
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 233 AGACACTGCTGTTCTCAAGAAGGAACACGATAGTTTGACGGATCGTATGAGTAAAATCAA 292
Query 278 AAGCGATCTTCTTCATCAAGCATCGATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCG 337
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 293 AAGCGATCTTCTTCATCAAGCGTCGATTGACTCTACCGGCGTCTTTGCTTCTCGTCTCCG 352
Query 338 TCTACTTTTCGGTGAAGATAAAAAGTGATCGGAGATTTGATTGGTTTG 385
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TCTACTTTTCGGTGAAGATAAAAAGTGATCGGAGATTTGATTGGTTTG 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5