BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20440.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921008 jgi|Araly1|921008|scaffold_102289.1 1290 0.0
Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 322 4e-87
> Ahg921008 jgi|Araly1|921008|scaffold_102289.1
Length=851
Score = 1290 bits (698), Expect = 0.0
Identities = 803/854 (94%), Gaps = 5/854 (1%)
Strand=Plus/Plus
Query 90 AATCAAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 149
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AATCGAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 61
Query 150 ACCAACGGTCGCAACAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATT 209
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 62 ACCAAAGGTCGCAACAGAGGAATCACCAGCGACGACTACAGAGGTTACGGATCGTGGATT 121
Query 210 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACAACGACGCTCGA 269
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACGACGACGCTCGA 181
Query 270 GTCTGAGTTCGATCATAAGGCTCAGATCTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 329
| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 GCCTGAGTTCGATCACAAGGCTCAGAACTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 241
Query 330 AGTGAAGGAGAACAAGATTACTCTGCTAGAGGAGCTTCAAGAAAAGACCGAGGAAGATGA 389
|||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 242 AGTGAAGGAGAACAAGATTACTCTCCTTGAAGAGCTTCAAGAGAAGACTGAGGAAGATGA 301
Query 390 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACAGCTCTTCTTCCTCTTC 449
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 302 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACGGCTCTGCTTCCTCTTC 361
Query 450 GAGCGATgaagaaggtgaggaaaagaaggagaagaagaagaagatcgttgaaggagagga 509
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 362 GAGCGATGAAGAAGGTGAGGAGAAGAAGGAGAAGAAGAAGA---TCGTTGAAGGAGAGGA 418
Query 510 agataagaaaggactagtggagaagatcaaggagaagCTCCCAGGACACCACGACAAGAC 569
||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 419 AGAGAAGAAAGGACTAGCGGAGAAGATCAAGGAGAAGCTTCCAGGCCACCACGACAAGAA 478
Query 570 AGCAGAGGATGATGTACCAGTTTCCACTACCATCCCGGTACCAGTGTCGGAGAGTGTGGT 629
| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 479 ACCAGAGGATGATGTACCAGTTTCCACCACCATCCAGGTACCAGTGTCGGAGAGTGTGGT 538
Query 630 GGAGCATGACCATCCCGAGGAAGAGAAGAAAGGATTAGTTG-AGAAGATCAAGGAGAAGC 688
|||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 539 GGAGCATGACCAACCCGAGGAAGAGAAGAAAGGACCAGT-GCAGAAGATCAAGGAGAAGC 597
Query 689 TTCCTGGTCACCACGACGAGAAAGCAGAGGATTCACCAGCTGTCACGTCCACGCCGTTGG 748
||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 598 TTCCTGGCCACCACGACAAGACTGCAGAGGATTCACCAGCTGTCACCAGCACGCCGTTGG 657
Query 749 TTGTAACGGAGCATCCGGTGGAGCCTACGACGGAGCTTCCAGTGGAACATCCGGAGGAGA 808
|||||||||||||||| ||||||||||||||||||| ||| | ||| |||||||||||||
Sbjct 658 TTGTAACGGAGCATCCAGTGGAGCCTACGACGGAGCATCCGGAGGAGCATCCGGAGGAGA 717
Query 809 AGAAGGGGATTTTGGAAAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 868
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 AGAAGGGCATTTTGGGAAAGATTAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 777
Query 869 AAGAGGAAGTGAAGAAAGAAAAAGAGTCTGATGATTAAGCAAAATGGTTAAAGAATGAAT 928
||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 778 AAGAGGAAGAGAAGAAAGTAAAAGAGACTGATGCTTAAGAAAAATGGTTAAAGAATGAAT 837
Query 929 AATGATGTGGGAGT 942
||||||||||||||
Sbjct 838 AATGATGTGGGAGT 851
> Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2
Length=1304
Score = 322 bits (174), Expect = 4e-87
Identities = 640/847 (76%), Gaps = 103/847 (12%)
Strand=Plus/Plus
Query 164 CAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATTGTTTGATTTCTTGG 223
||||||||||| || | ||||| | ||||||| ||| || ||| |||| ||||||||
Sbjct 425 CAGAGGAATCATCAACCACGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTT-- 482
Query 224 GGAAGAAGGAA-GAGGAAGTGAAACCTCAAGAGACAACGACGCTCGAGTCTGAGTTCGAT 282
|||||| || |||||||| ||||||||||| || ||||| |||| ||||||||||||
Sbjct 483 -GAAGAA-AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAG 540
Query 283 CATAAGGCTCAGATCTCTGAACC-G-G-AGTTAGCT-GCGGAGCACGAGGAAG-TGAA-- 335
|| ||| |||||||||||||||| | | ||| | | || ||||||| |||| |||
Sbjct 541 CACAAGACTCAGATCTCTGAACCAGAGCCGTTTG-TGGCCAAGCACGAAGAAGAGGAACT 599
Query 336 GGA-GAAC--AAGATTACTCTGCTAGAGGAGCTTCA--AGAAAAGACCGAGGAAGATGAG 390
| | |||| ||| |||||| || ||| ||||||| || ||| | |||||| || ||
Sbjct 600 GAAGGAACAAAAGCCTACTCTCCTTGAGAAGCTTCACCAG-AAACA-CGAGGAGGAAGAA 657
Query 391 GAGAACAAGCCTAGTGTCATCGA-AAAGCTTCACCGATCCAACAGCTCTTCTTCCTCT-T 448
|| ||||||| | || || |||| ||| || ||||| ||||||||||||||||||||| |
Sbjct 658 GAAAACAAGCATGGTCTCCTCGACAAA-CTCCACCGTTCCAACAGCTCTTCTTCCTCTGT 716
Query 449 CG-AGCGATgaagaaggtgag--ga-aaagaaggagaa-g--aagaagaagatcgttgaa 501
| || | |||||| |||||| || ||||||| |||| | ||||| ||||||||||||
Sbjct 717 AGAAG-G-TGAAGACGGTGAGAAGAGAAAGAAGAAGAAGGAAAAGAAAAAGATCGTTGAA 774
Query 502 ggaga-g-g-----a-a-g-ata--ag-a--aaggactagtggagaagatcaaggagaag 546
||||| | | | | | | | || | ||||| || |||| |||||||||||||||
Sbjct 775 GGAGATGTGAAAACAGAGGAAGAGGAGAACCAAGGAGTAATGGACAAGATCAAGGAGAAG 834
Query 547 CTCCCAGGACACCACGACAAGA-CAGCAGAGG--ATGATGTACCAG-TTTCCACTACCAT 602
| || | || ||| || | ||| || || |||||||||||| | ||| |||||
Sbjct 835 TTTCC---ATACGGCGAGAA-ACCAG-AG-GGTCATGATGTACCAGAGGT-CACCACCAT 887
Query 603 CCCGGTACCA-GTGTCGGAGAGTGTGGTGGAGCATGACCATCCCGAGGAAGAGAAGAAAG 661
|| | |||| | |||| || | | | | | |||| || |||||||||||||
Sbjct 888 GCCAGCACCACAT-TCGG-TAGAG-GAT--A-AAAAACCA-GAGGAAGAAGAGAAGAAAG 940
Query 662 GATTAGTTGAGAAGATCAAGGAGAAGCTTCCTGGTCACCACGACGAGAAAGCAGAGGATT 721
||||| | || |||||||||||||||||||| || || || | | ||||| |||||||||
Sbjct 941 GATTAATGGATAAGATCAAGGAGAAGCTTCCAGGCCA-CA-G-CAAGAAACCAGAGGATT 997
Query 722 CACCAGCT-GTC-ACGTCCACGCCGTTGGTTGTAACGGAGCATCCGGTGGAGCCTACGAC 779
|| ||| | ||| || | | ||| |||||| ||| |||| | | || |
Sbjct 998 CA-CAGGTGGTCAAC-AGCGCACCGCTGGTTGAAAC--AGCA--------A--C-AC--C 1040
Query 780 GGAGCTTCCAGTGGAACATCCGGAGGAGAAGAAGGGGATTT-TGGAAAAGATCAAAGAGA 838
|| | | | ||| ||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 1041 -GA---T-C-GCGGAGCATCCGGAGGAGAAGAAGGGG-TTTATGGATAAGATCAAAGAGA 1093
Query 839 AGCTTCCAGGTTATCATGCCAAGACCACTGAAGAGGAAGTGAAGAAAGAAAAAGAGTCTG 898
||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||
Sbjct 1094 AGCTTCCAGGTTATCATGCCAAGACTAGTGGAGAGGAAGAGAAGAAAGATAAAGAGTCTC 1153
Query 899 ATGATTA-AGCAAAATGGTTAAAGAATGAATAAT---GATGTGGGAGTGGGACATTCGCT 954
|| | | || |||| | | |||||||||||||| ||||||||||||| ||||| | |
Sbjct 1154 -TG-TAAGAGAAAAA-GATGAAAGAATGAATAATAATGATGTGGGAGTGGAACATTTGTT 1210
Query 955 GTGTTTT 961
|||||||
Sbjct 1211 GTGTTTT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5