BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20450.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 1271 0.0
> Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2
Length=1304
Score = 1271 bits (688), Expect = 0.0
Identities = 1040/1196 (87%), Gaps = 80/1196 (7%)
Strand=Plus/Plus
Query 264 TAAGAAATAGTAAACGTCCTTTGCCATAATTT---AAAAAACTAA-TGAAATCTTTAACA 319
|||||||||||| ||||||||||||||| ||| |||||| ||| | ||||||||||||
Sbjct 153 TAAGAAATAGTATACGTCCTTTGCCATATTTTAAAAAAAAAATAATTAAAATCTTTAACA 212
Query 320 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTACTTCACACACTATAAAGTCCCACTCAT 379
|||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||
Sbjct 213 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTTCTT--CGCACTATAAAACCCCACTCAT 270
Query 380 CACAACAATATTCATCACACAGCTCTTGAAAACCATCTTAAAGCAACTCAAAGCTCAAAT 439
||||| ||||||||||||||||||||||||||||||| ||||| |||| | |||||||||
Sbjct 271 CACAATAATATTCATCACACAGCTCTTGAAAACCATCATAAAGAAACTTACAGCTCAAAT 330
Query 440 CGAAA-TTT--CTAGTTTCTCTTTATCATTCACGCTAA--G-T-GTTCAATCGAATCAAG 492
||||| ||| || |||||||||||||||| || ||| | | || || ||| |||||
Sbjct 331 CGAAATTTTGAATA-TTTCTCTTTATCATTCTCGTTAAGCGTTAATTAAACCGATTCAAG 389
Query 493 ATTAAGTATGGCAGAAGAGTACAAGAACACCGTTCCAGAGCAGGAGACCCCTAAGGTTGC 552
||||| ||||||||||||||||||||||| |||||| || |||| | | | | |
Sbjct 390 ATTAACTATGGCAGAAGAGTACAAGAACAACGTTCC--AG-AGGA-A----TCA---T-C 437
Query 553 AACAGAGGAATCATCGGCGCCAGAGATTAAGGAGCGGGGAATGTTCGATTTCTTGAAGAA 612
||| || || |||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 438 AAC--------CA-CGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTTGAAGAA 488
Query 613 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTTGAGCACAAGAC 672
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 489 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAGCACAAGAC 548
Query 673 TCAGATCTCTGAACCAGAGTCGTTTGTGGCCAAGCAC---G-A-A-GAA--G-AGGAACA 723
||||||||||||||||||| ||||||||||||||||| | | | ||| | |||||||
Sbjct 549 TCAGATCTCTGAACCAGAGCCGTTTGTGGCCAAGCACGAAGAAGAGGAACTGAAGGAACA 608
Query 724 TAAGCCTACTCTTCTCGAGCAGCTTCACCAGAAGCACGAGGAGGAAGAAGAAAACAAGCC 783
||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 609 AAAGCCTACTCTCCTTGAGAAGCTTCACCAGAAACACGAGGAGGAAGAAGAAAACAAG-C 667
Query 784 A-AGTCTCCTCGACAAACTCCACCGATCCAACAGCTCTTCTTCCTCTTCGAGTGATgaag 842
| |||||||||||||||||||||| |||||||||||||||| | | || || | ||
Sbjct 668 ATGGTCTCCTCGACAAACTCCACCGTTCCAACAGCTCTTCTT-C-C-TC---TG-T--AG 718
Query 843 aaggtgaagacggtgag-a-ag-aagaagaaggagaaaaagaagaagattgttgaaggag 899
||||||||||||||||| | || ||||||||| || ||||||| ||||| ||||||||||
Sbjct 719 AAGGTGAAGACGGTGAGAAGAGAAAGAAGAAGAAGGAAAAGAAAAAGATCGTTGAAGGAG 778
Query 900 atcatgtgaaaacagtggaagaagagaaTCAAGGAGTAATGGACAGGATTAAGGAGAAGT 959
|||||||||||| |||||| ||||| |||||||||||||||| ||| ||||||||||
Sbjct 779 ---ATGTGAAAACAGAGGAAGAGGAGAACCAAGGAGTAATGGACAAGATCAAGGAGAAGT 835
Query 960 TTCCACT-CGGAGAGAAACCAGGGGGTGATGATGTACCAGTCGTCACCACCATGCCAGCA 1018
||||| | ||| |||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 836 TTCCA-TACGGCGAGAAACCAGAGGGTCATGATGTACCAGAGGTCACCACCATGCCAGCA 894
Query 1019 CCACATTCGGTAGAGGATCACAAACCAGAGGAAGAAGAGAAGAAAGGGTTTATGGATAAG 1078
|||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||
Sbjct 895 CCACATTCGGTAGAGGATAAAAAACCAGAGGAAGAAGAGAAGAAAGGATTAATGGATAAG 954
Query 1079 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAAGTCGTCAACACC 1138
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 955 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAGGTGGTCAACAGC 1014
Query 1139 ACACCGCTGGTTGAAACAGCAACACCGATTGCTGA-CATCCCGGAGGAGAAGAAGGGATT 1197
|||||||||||||||||||||||||||| || || ||||| ||||||||||||||| ||
Sbjct 1015 GCACCGCTGGTTGAAACAGCAACACCGATCGCGGAGCATCC-GGAGGAGAAGAAGGGGTT 1073
Query 1198 TATGGACAAGATCAAAGAGAAGCTTCCAGGTTATCACGCCAAGACCACTGGAGAGGAAGA 1257
|||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1074 TATGGATAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACTAGTGGAGAGGAAGA 1133
Query 1258 GAAGAAAGA-AAA-AGTGTCTGATTAAGAGAAAAATATGATAAGAGTGAATAATAATGAT 1315
||||||||| ||| ||| |||| | |||||||||| |||| |||| ||||||||||||||
Sbjct 1134 GAAGAAAGATAAAGAGTCTCTG-T-AAGAGAAAAAGATGA-AAGAATGAATAATAATGAT 1190
Query 1316 GTGGGAGTGGGAC-TTATGTTGt-tttttgtttttt---gttgatcattgtctcttttat 1370
|||||||||| || || |||||| ||||| |||||| |||||||||| |||||||| |
Sbjct 1191 GTGGGAGTGGAACATT-TGTTGTGTTTTTTTTTTTTAATGTTGATCATTATCTCTTTTTT 1249
Query 1371 tttgtctttCTA-GCTGT-TC-TCCAAGTTTGTGTTTAGAGTTAGATCATTTGTGT 1423
||||| ||| || ||||| | ||||||||||||||||| |||||| |||||||||
Sbjct 1250 TTTGTATTT-TAAGCTGTGTTATCCAAGTTTGTGTTTAGTGTTAGACCATTTGTGT 1304
Score = 167 bits (90), Expect = 2e-40
Identities = 135/155 (87%), Gaps = 10/155 (6%)
Strand=Plus/Plus
Query 79 ACCAAACTTCCATACGTCTCCCGTGAACTAAAAGTACATTACTATGCAAATATCTAA-TA 137
|||||||||| |||| | ||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1 ACCAAACTTCTATACATTTCCCGTGAAATAAAAGTACATGACTATGCAAATATCTAATTA 60
Query 138 -TA--AGTTAACTCTAT-ATCAATATATTAAAAACATAAATCCTTAAATTAAGAAAAA-A 192
|| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 61 GTATTAGTTAAATCTTTAATCTGTATATTAAAAACATAAATCCTTAAATTAAGAAAAAGA 120
Query 193 TATGG-GGTGATTTCATTGATATTCATCCACCGAC 226
| || ||||||||||| |||||| ||||||||||
Sbjct 121 -A-GGTGGTGATTTCAT-GATATTTATCCACCGAC 152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5