BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20460.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921010 jgi|Araly1|921010|scaffold_102291.1                        566    6e-161


> Ahg921010 jgi|Araly1|921010|scaffold_102291.1
Length=364

 Score =  566 bits (306),  Expect = 6e-161
 Identities = 332/344 (97%), Gaps = 3/344 (1%)
 Strand=Plus/Plus

Query  125  AATCGCTGCATAGGAAAGCGATGATAACAAGATCGAATCTAGCAGAGCAGCTGAGGGAAT  184
            |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1    AATCGCAGCATAGGAAAGCGATGATTACAAGATCGAATCTAGCAGAGCAGCTGAGGGAAT  60

Query  185  ATCAGATTCGATCTAAGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAATT  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  61   ATCAGATTCGATCTAAGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAGTT  120

Query  245  TTTCTTC-T--TCTAGGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAG  301
            ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCTTCTTCCTCTAGGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAG  180

Query  302  CATTCTTCGTGTTTTCAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCT  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CATTCTTCGTGTTTTCAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCT  240

Query  362  TGGTATGTGTCACTTTGCTGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGATTAG  421
            || |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  241  TGATATGTGTCACGTTGATGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGGTTAG  300

Query  422  CCAGGAAGAAGAAGCGAAGGATGCTTCTTCCACTCTCTATGTAA  465
            ||||||||||||||||||||||||||||||| || |||||||||
Sbjct  301  CCAGGAAGAAGAAGCGAAGGATGCTTCTTCCGCTATCTATGTAA  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5