BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20470.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472276 jgi|Araly1|472276|fgenesh2_kg.1__2230__AT1G20470.1 961 0.0
> Ahg472276 jgi|Araly1|472276|fgenesh2_kg.1__2230__AT1G20470.1
Length=612
Score = 961 bits (520), Expect = 0.0
Identities = 583/613 (95%), Gaps = 5/613 (1%)
Strand=Plus/Plus
Query 1 CAGACAGTAACATACTAACCGTATACACAACGGTATTATATTGGTAACATATCAAAGCTC 60
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||
Sbjct 1 CAGACAGTAACATACTAACAGTATACACAACGGTATTATATTTGTAACAGATCAAAGTTC 60
Query 61 TCTATATGTCTCTGAAGAAAAGATCTTGCTCGAGGCTTAGACTCACCGATTTGATGGAGA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTATATGTCTCTGAAGAAAAGGTCTTGCTCGAGGCTTAGACTCACCGATTTGATGGAGA 120
Query 121 AGTGGAGGAAGTGTAAGAAAGGACACTTCGCTGTGTATACCAGAGAAGGCAGGAGGTTTG 180
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 121 AGTGGAAGAAGTGTAAGAAAGGACACTTTGCTGTGTACACCAGAGAAGGCAGGAGGTTTG 180
Query 181 TTTTACCCTTGGATTATCTCAAACATCCAATCTTTCAGGTCTTATTGGAGATGGCAGAGG 240
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTGCCGTTGGATTATCTCAAACATCCAATCTTTCAGGTCTTATTGGAGATGGCAGAGG 240
Query 241 AAGAGTTTGGCTCCACTATTTGTGGCCCTTTACAGGTTCCTTGCGACGGAGGTTTGATGG 300
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 241 AAGAGTTTGGTTCCACCATTTGTGGTCCTTTACAGGTTCCTTGCGATGGAGGTTTGATGG 300
Query 301 ATCACATCCTCATGTTGTTGAGGAACAAGAGTTTGTCTGACCATGATGATGATGGTGGTG 360
|||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 301 ATCACATCCTCATGTTGTTGAGAAACAGGAATTTGTCTGACCATGATGATGATGGTGGTG 360
Query 361 ATGATGGTGT---GAAGAAGACGATGAACCAGGATGTGTCCCCCATGAGCACGTCGTGCA 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGATGGTGTGAAGAAGAAGACGATGAACCAGGATGTGTCCCCCATGAGCACGTCGTGCA 420
Query 418 AGGGAGCTTCATCGGTTTCATATTTCTTCCCTCTCTTTCGTTGCAACGCAGCCCATGATC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGGAGCTTCATCGGTTTCATATTTCTTCCCTCTCTTTCGTTGCAACGCAGCCCATGATC 480
Query 478 AGAGCAAGCTCCAGTCTCTAGTTTTTTAACAGTTTATG-GTTGTGGAGAGCGCTTTTTAT 536
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 481 AGAGCAAGCTCCAGTCTCTAGTTTTTTAACAGTTTATGCGTTGTGTAGAGCGCTTTT-AC 539
Query 537 ACACAAAAATCTTTTCTGTTTGTATATAAATAGAAACAGAGATTCTCTATAAACCTTCAG 596
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||
Sbjct 540 ACACAAAGGTCTTTTCTGTTTGTATATATATAGAAACAGAGATTCTATATAAGCTTTCAG 599
Query 597 TTTGTATATCATT 609
|||||||||||||
Sbjct 600 TTTGTATATCATT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5