BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20480.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312965 jgi|Araly1|312965|fgenesh1_pm.C_scaffold_1001745 2436 0.0
> Ahg312965 jgi|Araly1|312965|fgenesh1_pm.C_scaffold_1001745
Length=4674
Score = 2436 bits (1319), Expect = 0.0
Identities = 1457/1526 (95%), Gaps = 0/1526 (0%)
Strand=Plus/Plus
Query 214 AGCCTCATCGCGGCAAAACCGTATTCGTCGACGCCGTAACCGGTCGTCGACTAAGCTTCC 273
||||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 3149 AGCCTCATCGCGGTAAAACTGTATTCGTCGACGCCGTAACCGGTCGTCGTCTTAGTTTCC 3208
Query 274 CTGAGCTCTGGCTCGGTGTCGAAAGAGTCGCGGGTTGTCTTTACGCATTAGGTGTACGCA 333
| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 3209 CCGAGCTCTGGCTCGGTGTCGAAAGAGTCGCGGCTTGTCTTTACGCATCAGGTGTACGCA 3268
Query 334 AAGGAAATGTCGTCATTATACTCTCTCCAAACTCAATCCTCTTCCCGATCGTCTCCCTCT 393
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3269 AGGGAAATGTCGTCATTATACTCTCTCCAAACTCAATCCTCTTCCCGATCGTCTCCCTCT 3328
Query 394 CCGTAATGTCACTCGGCGCAATCATAACCACCGCTAATCCGATCAACACGTCCGACGAAA 453
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 3329 CCGTAATGTCACTCGGCGCAATCATCACCACAGCTAATCCGATCAACACTTCCGACGAAA 3388
Query 454 TCTCCAAACAGATAGGCGATTCGCGTCCTGTTCTCGCCTTCACCACATGCAAACTCGTCT 513
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 3389 TCTCCAAACAGATCGGCGATTCGCGTCCTGTTCTCGCCTTCACCACATGCCAACTCCTCT 3448
Query 514 CCAAACTCGCCGCCGCGTCGAATTTTAATCTCCCGGTGGTTCTCATGGACGACTACCACG 573
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 3449 CCAAACTCGCCGCCGCGTCGAATTCGAATCTCCCGGTGGTTCTCATGGACGAAAACCACG 3508
Query 574 TTCCTTCGCAAAGTTACGGTGACCGCGTGAAACTAGTCGGGAGGTTAGAGACGATGATTG 633
| ||||| |||| | || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 3509 TGCCTTCACAAACTCACAGTGACCGCGTGAAAATAGTCGGGAGGTTAGAGACGATGATTG 3568
Query 634 AAACAGAACCGAGTGAGTCACGAGTTAAGCAACGAGTCAACCAGGACGACACGGCGGCTC 693
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3569 AAACGGAACCAAGTGAGTCACGAGTTAAGCAACGAGTCAACCAGGACGACACGGCGGCTC 3628
Query 694 TGTTATACTCATCAGGTACGACGGGGACGAGTAAAGGAGTAATGCTGAGTCACCGTAACC 753
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3629 TGTTATACTCATCAGGCACGACGGGGACGAGTAAAGGAGTAATGCTGAGTCACCGTAACC 3688
Query 754 TAATCGCATTGGTACAAGCATACCGGGCCCGGTTCGGTTTAGAGCAGCGAACCATTTGCA 813
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 3689 TAATCGCATTGGTACAAGCATACCGGGCCCGGTTTGGTTTAGAGCAGCGAACCGTTTGCA 3748
Query 814 CAATCCCAATGTGTCACATCTTCGGATTCGGTGGTTTCGCGACGGGGCTAATCGCGTTAG 873
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3749 CAATCCCAATGTGTCACATATTCGGATTCGGTGGTTTCGCGACGGGGCTAATCGCGTTAG 3808
Query 874 GATGGACAATCGTTGTTCTTCCTAAATTCGACATGGCTAAGCTTCTCTCGGCGGTGGAGA 933
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 3809 GATGGACAATCGTTGTTCTTCCCAAATTCGATATGGCTAAGCTTCTCTCGGCGGTGGAGA 3868
Query 934 CTCATCGTTCTTCGTACCTTTCTCTTGTACCGCCGATTGTAGTAGCTATGGTTAACGGAG 993
||| |||||||||||||||||||||||||| |||||||| || |||||||||||| |||
Sbjct 3869 TTCACCGTTCTTCGTACCTTTCTCTTGTACCCCCGATTGTGGTTGCTATGGTTAACAGAG 3928
Query 994 CAAATGAGATTAATTCCAAGTATGATCTGAGCTCGTTGCACACTGTGGTGGCTGGAGGAG 1053
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3929 CAAATGAGATCAATTCCAAGTACGATCTGAGCTCGTTGCACACTGTGGTGGCTGGAGGAG 3988
Query 1054 CTCCGTTGAGTAGAGAGGTGACGGAGAAGTTCGTTGAGAATTATCCCAAGGTTAAGATCC 1113
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 3989 CTCCGTTGAGTAGAGAGGTGACGGAGAAGTTCGTTGAGAATTATCCGACGGTTAAGATTC 4048
Query 1114 TACAAGGGTATGGTTTGACTGAGTCAACGGCTATAGCTGCTTCTATGTTTAATAAAGAGG 1173
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4049 TACAAGGCTATGGTTTGACTGAGTCAACGGCTATAGCTGCTTCTATGTTTAATAAAGAGG 4108
Query 1174 AGACTAAGAGGTATGGAGCTTCTGGCTTACTGGCTCCGAATGTGGAAGGTAAGATTGTGG 1233
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 4109 AGACTAAGAGGTATGGAGCTTCTGGATTATTGGCTCCAAATGTGGAAGGTAAGATTGTGG 4168
Query 1234 ATCCGGATACGGGTCGGGTTTTGGGTGTGAATCAAACGGGTGAGCTGTGGATTCGAAGTC 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4169 ATCCGGATACGGGTCGGGTTTTGGGTGTGAATCAAACGGGTGAGCTGTGGATTCGAAGTC 4228
Query 1294 CTACTGTGATGAAAGGTTATTTCAAGAATAAAGAAGCTACTGCTTCTACCATTGATTCAG 1353
| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 4229 CCACTGTGATGAAAGGTTATTTCAAGAACGAAGAAGCTACTGCTTCTACTATTGATTCAG 4288
Query 1354 AAGGATGGTTGAAAACTGGAGATTTGTGTTACATTGACGGTGATGGGTTTGTCTTTGTTG 1413
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 4289 AAGGATGGTTGAAAACTGGCGACTTGTGTTACATTGACAGTGATGGGTTTGTCTTTGTTG 4348
Query 1414 TTGATAGATTAAAGGAGCTCATCAAATGCAATGGTTATCAGGTTGCTCCAGCTGAACTAG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4349 TTGATAGATTAAAGGAGCTCATCAAATGCAATGGTTATCAGGTTGCTCCAGCTGAACTAG 4408
Query 1474 AGGCATTGTTGCTTGCTCATCCAGAGATTGCTGATGCAGCAGTAATACCCATCCCTGACA 1533
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4409 AGGCATTGTTGCTTGCTCATCCAGAGATTTCTGATGCAGCAGTAATACCCATCCCTGACA 4468
Query 1534 TGAAAGCTGGGCAATATCCAATGGCATATATCGTAAGAAAAGTTGGAAGTAACTTATCCG 1593
|| ||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 4469 TGGAAGCTGGACAATATCCAATGGCATATATCGTAAGGAAAGCTGCAAGTAACTTATCCG 4528
Query 1594 AGAGCGAAATCATGGGATTTGTCGCAAAACAGGTATCACCGTACAAGAAGATTCGCAAAG 1653
| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4529 AAAACGAAATCATGGGGTTTGTCGCAAAACAGGTATCACCGTACAAGAGGATTCGCAAAG 4588
Query 1654 TCACATTTTTGGCTTCAATCCCCAAAAATCCTTCGGGCAAGATTTTAAGAAGAGAACTTA 1713
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4589 TCACATTTTTAGCTTCAATCCCCAAAAATCCTTCTGGCAAGATTTTAAGAAGAGAACTTA 4648
Query 1714 CAAAGCTCACAACTTCAAAACTCTAG 1739
|||||||||||||||||| ||||||
Sbjct 4649 TAAAGCTCACAACTTCAAAGCTCTAG 4674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5