BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20515.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911886 jgi|Araly1|911886|Al_scaffold_0001_2140 1077 0.0
> Ahg911886 jgi|Araly1|911886|Al_scaffold_0001_2140
Length=666
Score = 1077 bits (583), Expect = 0.0
Identities = 641/667 (96%), Gaps = 11/667 (2%)
Strand=Plus/Minus
Query 88 TCAAACCGGAGATGTTTTAGCTGTAAGAATATTAAGAAGTGAAACTCTGGTCTGAATCAG 147
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCAAACCGGAGACGTCTTAGCTGTAAGAATATTAAGAAGTGAAACTCTGGTCTGAATCAG 607
Query 148 TCGCCGGAAAATACACTCCAACTCGATCTCAAGCTCCTCAACAGTGATCTCTGCAGCCTC 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCGCCGGAAAATACACTCCAACTCGATCTCAAGCTCCTCAACAGTGATCTCTGCAGCCTC 547
Query 208 CAACCTTGTACTTGCGCTCCGCATCGCTACTTCGTCCCACGCATCATCAAAGCAGCAAAA 267
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 546 CAACCTTGTACTTGCGCTCTGCATCGCTACTTTGTCCCACGCATCATCAAAGCAGCAAAA 487
Query 268 CTGCATCGTAAAGATAGAAGAAAATGACCCTATGCTCGGTTTTCTCTCGAGCCAAGGAAC 327
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 486 CTGCATTGTAAAGATAGAAGAATATGACCCTATGCTCGGTTTTCTCTCGAGCCAAGGAAC 427
Query 328 ACATACGAGTGAGAACAGAGACTCAACCATAGTCACAACGGCTCTTCTCACTTCTTTCAA 387
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 426 ACACACGAGTGAGAACAGAGACTCAACCATAGTCACAACAGCTCTTCTCACTTCTCTCAA 367
Query 388 AACCTCAGCAACAAACAGAAGGTTCTGCTCTATGCTCTGCATCTCCATCATCCCTCTCCC 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AACCTCAGCAACAAACAGAAGGTTCTGCTCTATGCTCTGCATCTCCATCATCCCTCT--- 310
Query 448 TCCTCCTTCAATACTCTTTAGACTATTTAAACACTTGAGCGTTTCCTTCTTGAGCTTGTT 507
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCCTCCGTCAATACTCTTTAGACTATTTAAACACTTGAGCGTTTCCTTCTTGAGCTTGTT 250
Query 508 CCTATACCGATTATACGCTGCAACCTTTTCACTAAGGTTTGATCCATTACAGCGCAGAGT 567
||||||||||||||||||||| | ||| ||||| ||||||||| ||||||||||||||||
Sbjct 249 CCTATACCGATTATACGCTGCGATCTTCTCACTGAGGTTTGATTCATTACAGCGCAGAGT 190
Query 568 CAGTTGAAGATCTTGCAGGCCATGTCTCACGAGTGCCATGACATCTTTCGACACATTACA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CAGTTGAAGATCTTGCAGGCCATGTCTCACGAGTGCCATGACATCTTTCGACACATTACA 130
Query 628 GACATCTAACATTATTAGTGAAGCTTCAGAGACTTGCTCGATCCAGTTCTCTTTCCCTTG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GACATCTAACATTATTAGTGAAGCTTCAGAGACTTGCTCGATCCAGTTCTCTTTCCCTTG 70
Query 688 TTGGCACAGAGACTCTCTTGCTTCTGGACAGTGATCGAGAAGATAGTTTGCGCAGTCTTG 747
||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TTG--AC------TCTCTTGCTTCTGGACAGTGATCGAGAAGATAGTTTGCGCAGTCTTG 18
Query 748 TAGTTCT 754
|||||||
Sbjct 17 TAGTTCT 11
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5