BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20530.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312968 jgi|Araly1|312968|fgenesh1_pm.C_scaffold_1001748 2793 0.0
> Ahg312968 jgi|Araly1|312968|fgenesh1_pm.C_scaffold_1001748
Length=1839
Score = 2793 bits (1512), Expect = 0.0
Identities = 1741/1851 (94%), Gaps = 18/1851 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGCTCCCCCTCCAAGCTCGACGGTTTACCGGCCGTATCTCTATGCCGTGACCGC 60
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGTTGCTCCCCCTCAAAGCTCGACGGTTTACCGGCCGTCTCTCTATGCCGTGACCGC 60
Query 61 TGCAGCTCACTCGAAGATACGCTCCGGCGAAGCTACGCCTTAGCCGACGCTCACTCAGCT 120
|||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAACTCACTAGAAGACACTCTCCGGCGAAGCTACGCCTTAGCCGACGCTCACTCAGCT 120
Query 121 TATCTCCTTTCTCTGAACACCGTCGGTCCAGCTCTCCATAGATTCTTCCAACATGCCGTC 180
|||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 121 TATCTCCTCTCTCTAAACACCGTCGGTCCTGCTCTTCATAGATTCTTCCAACAAGCCGTC 180
Query 181 GAGTCTCCGCCGGATGTTGAATCCGAAGCTGACGAATCACCGGAGACGTATTCTCCGGAA 240
|||||||| || ||||||||||||||||| ||| |||| |||||||||||||| ||||||
Sbjct 181 GAGTCTCCACCAGATGTTGAATCCGAAGCCGACCAATCCCCGGAGACGTATTCGCCGGAA 240
Query 241 TCCTGTTCCT-CGGCTCACTCGGTTACCAGTTCTGATTCCGATTTGCCTCCCAAGTTCGA 299
|||| || || | ||||||| ||||||||||| |||||||||| ||||||||| |||||
Sbjct 241 TCCTCTT-CTCCATCTCACTCCGTTACCAGTTCAGATTCCGATTCGCCTCCCAAATTCGA 299
Query 300 TTCGGATTGTGAGGAAG--G-TGAAGGTACGAATTGCGATCTCTTAAGCGGTTCAAAACC 356
||||||||||||||||| | ||||||||||||||||||||| || ||| || ||||| |
Sbjct 300 TTCGGATTGTGAGGAAGAAGATGAAGGTACGAATTGCGATCTTTTCAGCTGTCCAAAA-C 358
Query 357 T-GAATCTCTAAATCTTAATCATGACTCGTTCTACTCCCGGAGATACGAATCCGGCACCA 415
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 TCGAATCACTAAATCTTAATCATGACTCGTTTTACTCCCGGAGATACGAATCCGGCACCA 418
Query 416 TAACGCCGCCTCCTCCACCGCCGGCTCCGAGTAATTACGCTTGGGATTTTATCAATTTCT 475
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAACGCCGCCTCCACCGCCGCCGGCTCCGAGTAATTACGCTTGGGATTTTATCAATTTCT 478
Query 476 TCGAGAGCTATGAGCTTCCGTACACTACGGATGTCAATGATTTGAAGGATAGAGAGACCA 535
|||||| ||||||| ||||||||| |||| ||| ||| |||||||| |||||||||||||
Sbjct 479 TCGAGAACTATGAGTTTCCGTACATTACGAATGCCAAAGATTTGAAAGATAGAGAGACCA 538
Query 536 CTCCTTCTCATgaagaagataagttgaagaagaagaagattactgtgagccaaaacgatg 595
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 539 CTCGTTTTCATGAAGAAGATAAGTTGACGAAGAAGAAGATTACTGTGAGCC-AAA--AT- 594
Query 596 agaagattaaagtagaagaagagaaaaaaaCTCTGAGAATCTCAGAGAAAAATAGGAAGC 655
|||||| || |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 595 -----ATTAAAATAAAAGAAGAGAAGAAAACTCTGAGAATCTCAAAGAAAAATAGGAAGA 649
Query 656 GTGCTCCTAAAGAATCAAAGGATCAAAAAGTTTCATCAGATTTATCTGAAGTAACAAAGC 715
|||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||
Sbjct 650 GTGCTCCTAAAGAATCAAAGAATCATAAAGTTTCATCAGATTTCTCTGAAGTCACAAAGC 709
Query 716 AATTGCAGGAAATGTTCAAGAAAGCTTCAGAATCAGGGAATGATGTTTCGAAGATGTTTG 775
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 710 AATTGCAAGAAATGTTCAAGAAAGCTTCAGAATCAGGGAATGATGTTTCGAAGATGTTCG 769
Query 776 ACACTTCCAGATTCAGATACTACCAGAAAAGCTCTGTTTATCAATGTAATGTTCGAATTC 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 770 ACACTTCCAGATTCAGATACTACCAGAAAAGCTCTGTTTATCAATGTAATGTTCGAGTTC 829
Query 836 TTCTTCCTTCTTCAAACATTCTCTACACGAAGAAGGTGATGACTCCATTTGATCCCAAAC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTCTTCCTTCTTCAAACATTCTCTACACGAAGAAGGTGATGACTCCATTTGATCCCAAAC 889
Query 896 CAGTGGAAGAATCTAATTTCAATAATCTTTCATCTACTCTGAAGAAACT-TTTCATGTGG 954
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 890 CAGTGGAAGAATCTGATTTCAATAATCTTTCATCTACTCTGAAGAAACTATTT-ATGTGG 948
Query 955 GAGAAGAAACTGTACCAAGAAGTAAAGGCTGAGGAGAAACTCCGAACATCTCACATGAAG 1014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 GAGAAGAAACTGTACCAAGAAGTAAAGGCTGAGGAGAAACTCCGAACTTCTCACATGAAG 1008
Query 1015 AACTACAAACTATTGAGGAGATTGGAAGCAAAAAGTGCAGATCTAAGCAAAATCGAAGCT 1074
|||||||||| | |||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1009 AACTACAAACAACTGAGGAGATTGGAAGCAAAAAGTGCAGATCTAAGCAAAGTTGAAGTT 1068
Query 1075 ATTCGTTCTTCGATTCAGTGTTTGTCTACAAGAATGAGAGTTTCTATCCATAAGATAAAC 1134
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1069 ATTCGTTCTTCGGTTCAGTGTTTGTCTACAAGAATGAGAGTCTCTATCCATAAGATAAAC 1128
Query 1135 AACATTTGTCTGACGATAAACAAGTTACGCGATGAAGAGCTCTGGTTCCAAATGAAAGAG 1194
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1129 AACATTTGTCTGACGATAAACAAGTTACGCGATGAAGAGCTCTGGTCCCAAATGAAAGAA 1188
Query 1195 TTGATCCACAGGTTGTCTGAGATGTGGAACTCTATGCTAGAATGTCACAGTAGACAATCT 1254
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1189 TTGATCCACAGGTTGTCTGTGATGTGGAGCTCTATGCTAGAATGTCACAGGAGACAATCT 1248
Query 1255 AAAGTAATTGCAGAGGCTAAGAAGCTTGATAAGATGACAATAAAGGAGAATCTAGACTTA 1314
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AAAGTGATCGCAGAGGCTAAGAAGCTTGATAAGATGACAATAAAGGAGAATCTAGACTTA 1308
Query 1315 TCTCAGCTTGAGCTTGCTATGGAATTGAAACTGGAGTTGAGGAACTGGAGTCTAAGCATG 1374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1309 TCTCAGCTTGAGCTTGCTATGGAATTGAAACTGGAGTTGAGGAACTGGAGCCTAAGCCTG 1368
Query 1375 TCGAACTGGATAGATGCTCAGGCTCAGTATGTTAAAGCCTTGAACAATTGGCTAATGCGA 1434
|| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1369 TCCAACTGGATAGACGCTCAGGCTCAGTATGTTAAAGCTTTGAACAGTTGGCTAATGCGA 1428
Query 1435 TGTTTAAAACAGGAACCTCAAGAACCAACACCAGATCTCTCAGAAGAGCCACCATTGTTT 1494
| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1429 TATTTAAAGCAAGAACCTCAAGTACCAACACCAGATCTCTCAGAAGAGCCACCATTGTTT 1488
Query 1495 GGTGCTATTAACACTTGGTCACAAAACCTTGAGATATCACACGGAGAGAAGGAGTTTACA 1554
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1489 GGTGCTATTAACACTTGGTCACAAACCCTTGAGAGATCACACGGAGAGAAGGAGTTTACG 1548
Query 1555 GAAGCGGTTTACACGATTTTGATGCACGTAAACCATCAGGTGGAGAAACAGAGGATGGAA 1614
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 1549 GAAGCGGTTTACACGATTTTGATGCATGTAAACCGTCAGGTTGAGAAACAGAGGATGGAA 1608
Query 1615 TTGGAAGAGCAGAGGAATGTTAATGGCAGCGTAAAGGATATAGAAAGGAAGCTTATGATG 1674
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1609 TTGGAAGAGCAGAGGAATGTTAATGGTAGCGTAAAGGATATAGAGAGGAAGCTCATGATG 1668
Query 1675 TTAGAGAAGGAAGAGCAGAAGATGCAGAGGAAGATGAAGACAGTACCATCTGTTGCATTA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1669 TTAGAGAAGGAAGAGCAGAAGATGCAGAGGAAGATGAAGACAGTACCATCTGTTGAATTA 1728
Query 1735 ATGGGGAGTTTAAATCTGAAGTCTAACATGGAACAGATATTCAAATCGATGGAGAAATTA 1794
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1729 GTGGGGAGTTTAAATCTGAAGTCTAACATGGAACAGATATTCAAATCTATGGAGAAATTA 1788
Query 1795 GCTACAAACTCAAAGCAGACTTATGAGGAACTTGACTTGATGTGCACGTAA 1845
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GCTACAAACTCAAAGCAGACTTATGAGGAACTTGACTTGATGTGCACGTAA 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5