BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20540.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1 2109 0.0
Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1 1166 0.0
> Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1
Length=1260
Score = 2109 bits (1142), Expect = 0.0
Identities = 1223/1262 (97%), Gaps = 6/1262 (0%)
Strand=Plus/Plus
Query 8 TCTACCTGAATCAGTGCGTCTGGCTCAGGTGACAATGCAAGGAGGATCATCGGGTATTGG 67
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||| || ||
Sbjct 1 TCTACCTGAATCAGTGCGTC-GGCTCAGGCGACAATGCAAGGAGGATCGTCGGGAATCGG 59
Query 68 ATACGGTTTGAAGTATCAGTCTAGATGTATATCGGATGTGAAAGCCGATACGGATTACAC 127
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 ATACGGTTTGAAGTATCAGGCTAGATGTATATCGGATGTGAAAGCAGATACGGATTACAC 119
Query 128 AAGCTTTCTCACTGGAACTCTT-AGTTTAAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 186
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 120 AAGCTTTCTCACTGGAACT-TTAAGTTTGAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 178
Query 187 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 238
Query 247 GGGACCTTGCTTCTTGCCCTTTTGATCAACGCATTTTCTCCACCGTCTTCTCCACTGGTG 306
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 239 GGGACCTTGCTTCTTGCCCTTTCGATCAACGCATTTTCTCTACTGTCTTCTCCACTGGTG 298
Query 307 AATCGTTTGGAGCAGCGATATGGCAAATTCCTGAGTTATATGGTCAACTGAATTCTCCAC 366
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 AATCATTTGGAGCAGCGATTTGGCAAATTCCTGAGTTATATGGTCAATTGAATTCTCCAC 358
Query 367 AATTGGAGCGTGTTGCTTCTCTTGATGCTCATGTTGGTAAGATTAATTGTGTTCTTTGGT 426
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 AATTGGAGCGTGTTGCATCTCTTGATGCACATGTTGGTAAGATTAATTGTGTTCTTTGGT 418
Query 427 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 478
Query 487 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 538
Query 547 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACGGGTG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACTGGTG 598
Query 607 AATCATCTGTTCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 666
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCATCTGTCCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 658
Query 667 CTCATGTACGCGGTGTTGATTACAATCCCAAGAGAGAACATATACTTGTAACTGCAGAGG 726
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 CTCATGTACGCGGTGTTGACTACAATCCCAAGAGAGAACATATACTTGTGACTGCAGAGG 718
Query 727 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 778
Query 787 CTGGTCATACACATTGGACTTGGGCTGTCAGGTGTAACCCTGAGTATGATGGACTGATTC 846
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 779 CTGGTCATACACATTGGACATGGGCTGTCAAGTGTAACCCTGAGTATGATGGACTGATTC 838
Query 847 TGAGCGCTGGAACAGATTCGGTTGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATG 906
||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||
Sbjct 839 TGAGCGCTGGAACAGATTCGGCTGTCAACCTGTGGTTTGCTTCAGCATCACCCAGTGATG 898
Query 907 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTCAACT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTTAACT 958
Query 967 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1018
Query 1027 TTTTTGCATCATTATCATATGACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTC 1086
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 TTTTTGCATCATTATCATATGACGGAAGAGTCGTCATCGAATCCGTCAAGCCTTTCCTTC 1078
Query 1087 CAAGAATATAGTAAAAACCCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1146
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAGAATATAGTAAAAACTCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1138
Query 1147 GGTAAAG---TTGGCACTATTGTATTTGAAACAATGTACTTTTGACACAATCTTTGTGGA 1203
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 GGTAAAGAAGTTGGCACTATTGTATTTGAAGCAATGTACTTTTGACACAATCTTTGTGGA 1198
Query 1204 TCCTGATGTATCTATCTATCATTCACCAAGATTCTATCGGTATCAATATTCAGTTGCTTT 1263
|| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1199 TCATGATGTATCTATCTATCATTCACCCAGATTCTTTCGGTACCAATATTCAGTTGCTTT 1258
Query 1264 GA 1265
||
Sbjct 1259 GA 1260
> Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1
Length=1420
Score = 1166 bits (631), Expect = 0.0
Identities = 928/1070 (87%), Gaps = 25/1070 (2%)
Strand=Plus/Plus
Query 39 ACAATGCAAGGAGGATCATCGGGTATTGGATACGGTTTGAAGTATCAGTCTAGATGTATA 98
||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 96 ACAATGCAAGGTGGATCATCGGGTATTGGATATGGTTTGAAGTATCAGGCCAGATGTATA 155
Query 99 TCGGATGTGAAAGCCGATACG-GATTACACAAGCTTTCTCACTGGAACTCTTAGTTTAAA 157
|||||||||||||| |||| | ||| |||| ||||| ||||||||||| || || | ||
Sbjct 156 TCGGATGTGAAAGCAGATA-GAGATCACACCAGCTTCCTCACTGGAACCCTAAGCCTGAA 214
Query 158 AGAAGAAAATGAGGTTCATCTT-CTTCGTTTGTCATCTGGTGGATCTGAGCT-TATATGT 215
||||||||| ||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct 215 AGAAGAAAACGAGGTTCAT-TTGCTTCGTTTGTCATCTGGTGGATCTGAGCTGT-TATGT 272
Query 216 GAGGGTTTGTTCTCTCATCCTAATGAGATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 275
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 273 GAGGGTTTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 332
Query 276 CGCATTTTCTCCACCGTCTTCTCCACTGGTGAATCGTTTGGAGCAGCGATATGGCAAATT 335
||||||||||| || |||||||||||||| || || ||||||||||| |||||||| |||
Sbjct 333 CGCATTTTCTCTACTGTCTTCTCCACTGGCGAGTCATTTGGAGCAGCAATATGGCAGATT 392
Query 336 CCTGAGTTATATGGTCAA-CTGAATTCTCCA-CAATTGGAGCGTGTTGCTTCTCTTGATG 393
|||||| |||||||||| | ||||||| || || ||||| |||||||||| |||||||
Sbjct 393 CCTGAGCCATATGGTCAATC-GAATTCTTCAACA-TTGGAATGTGTTGCTTCCCTTGATG 450
Query 394 CTCATGTTGGTAAGATTAATTGTGTTCTTTGGTGGCCTTCTGGAAGATG-TGACAAGTTA 452
| |||||||||||||||||||| ||||||||||| || ||||||| || ||||||||||
Sbjct 451 CACATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAA-ATTCTGACAAGTTA 509
Query 453 ATCAGCATTGATGAACAAAATATTTTCTTGTGGAGCTTAGACTGTTCGAA-AAA-GTCTG 510
|||||||| || |||||||| || |||||||||| ||||||| ||| || ||| || |
Sbjct 510 ATCAGCATGGACGAACAAAACCTTGTCTTGTGGAGTTTAGACTCTTCAAAGAAAAGT--G 567
Query 511 CTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC-ATTCTTTATCTGGTGGAGCATGG 569
|||||||| |||||||||| || ||||| ||| || |||||||||||||||||||||||
Sbjct 568 CTGAGGTTTTATCTAAGGAGTCGGCTGGTATGC-GCCATTCTTTATCTGGTGGAGCATGG 626
Query 570 GATCCACATGATGTAAATGCTGTTGCAGCAACGGGTGAATCATCTGTTCAGTTCTGGGAC 629
||||||||||||| ||| ||||||||||||| |||||||||| | ||||| |||||
Sbjct 627 AATCCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGAT 686
Query 630 TTGCGTACTATGAAGAAGGTTAACTCAATTGAACATGCTCATGTACGCGGTGTTGATTAC 689
|| |||||||||||||||| ||| |||||||||| ||| |||||||| |||||| |||
Sbjct 687 TTACGTACTATGAAGAAGGCTAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTAC 746
Query 690 AATCCCAAGAGAGAACATATACTTGTAACTGCAGAGGATGAATCTGGCATACATGTCTGG 749
|||| |||||||||||||||||| || ||||||| ||||||||||| |||||| |||||
Sbjct 747 AATCTCAAGAGAGAACATATACTCGTTTCTGCAGATGATGAATCTGGTATACATCTCTGG 806
Query 750 GATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTCCTGGTCATACACATTGGACTTGG 809
||||| |||||| |||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct 807 GATCTTCGGAAGACCAATGTTCCTGTGCAAGAGCTCCCTGGTCATACACATTGGACATGG 866
Query 810 GCTGTCAGGTGTAACCCTGAGTATGATG-GACTGATTCTGAGCGCTGGAACAGATTCGGT 868
|||||||||||||||||||||||||| | | || |||||||||| ||||||||| || |
Sbjct 867 GCTGTCAGGTGTAACCCTGAGTATGAAGAG-CTAATTCTGAGCGTTGGAACAGACTCAGC 925
Query 869 TGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATGACAAAACCTCAGAAAGTCCTGT 928
||||||| |||||| ||| |||||| | | ||||| | |||||| ||| ||| || ||
Sbjct 926 TGTCAACTTGTGGTTTGCATCAGCATC-T--AGTGAAAATAAAACCGCAGGAAGCCCGGT 982
Query 929 GGAATCCA-CACGACAGCGTGTGAACCCGTTGCTCAACTCATACACTGACTATGAAGACA 987
|||| | | |||| |||||||||||||| ||||| || || || |||||||| |||||||
Sbjct 983 GGAAGC-ATCACGTCAGCGTGTGAACCCATTGCTAAATTCTTATACTGACTACGAAGACA 1041
Query 988 GTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGGTTTTTGCATCATTATCATATG 1047
||||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||||
Sbjct 1042 GTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATG 1101
Query 1048 ACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTCCAAGAATATAG 1097
|||| || || | || |||||||||||||||||||| ||||||| ||||
Sbjct 1102 ACGGGAGGGTTGTGATTGAATCCGTCAAGCCTTTCCTACCAAGAAGATAG 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5