BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20540.1 Length=1268 Score E Sequences producing significant alignments: (Bits) Value Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1 2109 0.0 Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1 1166 0.0 > Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1 Length=1260 Score = 2109 bits (1142), Expect = 0.0 Identities = 1223/1262 (97%), Gaps = 6/1262 (0%) Strand=Plus/Plus Query 8 TCTACCTGAATCAGTGCGTCTGGCTCAGGTGACAATGCAAGGAGGATCATCGGGTATTGG 67 |||||||||||||||||||| |||||||| |||||||||||||||||| ||||| || || Sbjct 1 TCTACCTGAATCAGTGCGTC-GGCTCAGGCGACAATGCAAGGAGGATCGTCGGGAATCGG 59 Query 68 ATACGGTTTGAAGTATCAGTCTAGATGTATATCGGATGTGAAAGCCGATACGGATTACAC 127 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 60 ATACGGTTTGAAGTATCAGGCTAGATGTATATCGGATGTGAAAGCAGATACGGATTACAC 119 Query 128 AAGCTTTCTCACTGGAACTCTT-AGTTTAAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 186 ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 120 AAGCTTTCTCACTGGAACT-TTAAGTTTGAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 178 Query 187 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 238 Query 247 GGGACCTTGCTTCTTGCCCTTTTGATCAACGCATTTTCTCCACCGTCTTCTCCACTGGTG 306 |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 239 GGGACCTTGCTTCTTGCCCTTTCGATCAACGCATTTTCTCTACTGTCTTCTCCACTGGTG 298 Query 307 AATCGTTTGGAGCAGCGATATGGCAAATTCCTGAGTTATATGGTCAACTGAATTCTCCAC 366 |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 299 AATCATTTGGAGCAGCGATTTGGCAAATTCCTGAGTTATATGGTCAATTGAATTCTCCAC 358 Query 367 AATTGGAGCGTGTTGCTTCTCTTGATGCTCATGTTGGTAAGATTAATTGTGTTCTTTGGT 426 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 359 AATTGGAGCGTGTTGCATCTCTTGATGCACATGTTGGTAAGATTAATTGTGTTCTTTGGT 418 Query 427 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 478 Query 487 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 538 Query 547 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACGGGTG 606 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 539 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACTGGTG 598 Query 607 AATCATCTGTTCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 666 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AATCATCTGTCCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 658 Query 667 CTCATGTACGCGGTGTTGATTACAATCCCAAGAGAGAACATATACTTGTAACTGCAGAGG 726 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 659 CTCATGTACGCGGTGTTGACTACAATCCCAAGAGAGAACATATACTTGTGACTGCAGAGG 718 Query 727 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 778 Query 787 CTGGTCATACACATTGGACTTGGGCTGTCAGGTGTAACCCTGAGTATGATGGACTGATTC 846 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 779 CTGGTCATACACATTGGACATGGGCTGTCAAGTGTAACCCTGAGTATGATGGACTGATTC 838 Query 847 TGAGCGCTGGAACAGATTCGGTTGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATG 906 ||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||| Sbjct 839 TGAGCGCTGGAACAGATTCGGCTGTCAACCTGTGGTTTGCTTCAGCATCACCCAGTGATG 898 Query 907 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTCAACT 966 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 899 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTTAACT 958 Query 967 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1018 Query 1027 TTTTTGCATCATTATCATATGACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTC 1086 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1019 TTTTTGCATCATTATCATATGACGGAAGAGTCGTCATCGAATCCGTCAAGCCTTTCCTTC 1078 Query 1087 CAAGAATATAGTAAAAACCCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1146 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CAAGAATATAGTAAAAACTCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1138 Query 1147 GGTAAAG---TTGGCACTATTGTATTTGAAACAATGTACTTTTGACACAATCTTTGTGGA 1203 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1139 GGTAAAGAAGTTGGCACTATTGTATTTGAAGCAATGTACTTTTGACACAATCTTTGTGGA 1198 Query 1204 TCCTGATGTATCTATCTATCATTCACCAAGATTCTATCGGTATCAATATTCAGTTGCTTT 1263 || |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| Sbjct 1199 TCATGATGTATCTATCTATCATTCACCCAGATTCTTTCGGTACCAATATTCAGTTGCTTT 1258 Query 1264 GA 1265 || Sbjct 1259 GA 1260 > Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1 Length=1420 Score = 1166 bits (631), Expect = 0.0 Identities = 928/1070 (87%), Gaps = 25/1070 (2%) Strand=Plus/Plus Query 39 ACAATGCAAGGAGGATCATCGGGTATTGGATACGGTTTGAAGTATCAGTCTAGATGTATA 98 ||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 96 ACAATGCAAGGTGGATCATCGGGTATTGGATATGGTTTGAAGTATCAGGCCAGATGTATA 155 Query 99 TCGGATGTGAAAGCCGATACG-GATTACACAAGCTTTCTCACTGGAACTCTTAGTTTAAA 157 |||||||||||||| |||| | ||| |||| ||||| ||||||||||| || || | || Sbjct 156 TCGGATGTGAAAGCAGATA-GAGATCACACCAGCTTCCTCACTGGAACCCTAAGCCTGAA 214 Query 158 AGAAGAAAATGAGGTTCATCTT-CTTCGTTTGTCATCTGGTGGATCTGAGCT-TATATGT 215 ||||||||| ||||||||| || ||||||||||||||||||||||||||||| | ||||| Sbjct 215 AGAAGAAAACGAGGTTCAT-TTGCTTCGTTTGTCATCTGGTGGATCTGAGCTGT-TATGT 272 Query 216 GAGGGTTTGTTCTCTCATCCTAATGAGATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 275 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 273 GAGGGTTTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 332 Query 276 CGCATTTTCTCCACCGTCTTCTCCACTGGTGAATCGTTTGGAGCAGCGATATGGCAAATT 335 ||||||||||| || |||||||||||||| || || ||||||||||| |||||||| ||| Sbjct 333 CGCATTTTCTCTACTGTCTTCTCCACTGGCGAGTCATTTGGAGCAGCAATATGGCAGATT 392 Query 336 CCTGAGTTATATGGTCAA-CTGAATTCTCCA-CAATTGGAGCGTGTTGCTTCTCTTGATG 393 |||||| |||||||||| | ||||||| || || ||||| |||||||||| ||||||| Sbjct 393 CCTGAGCCATATGGTCAATC-GAATTCTTCAACA-TTGGAATGTGTTGCTTCCCTTGATG 450 Query 394 CTCATGTTGGTAAGATTAATTGTGTTCTTTGGTGGCCTTCTGGAAGATG-TGACAAGTTA 452 | |||||||||||||||||||| ||||||||||| || ||||||| || |||||||||| Sbjct 451 CACATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAA-ATTCTGACAAGTTA 509 Query 453 ATCAGCATTGATGAACAAAATATTTTCTTGTGGAGCTTAGACTGTTCGAA-AAA-GTCTG 510 |||||||| || |||||||| || |||||||||| ||||||| ||| || ||| || | Sbjct 510 ATCAGCATGGACGAACAAAACCTTGTCTTGTGGAGTTTAGACTCTTCAAAGAAAAGT--G 567 Query 511 CTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC-ATTCTTTATCTGGTGGAGCATGG 569 |||||||| |||||||||| || ||||| ||| || ||||||||||||||||||||||| Sbjct 568 CTGAGGTTTTATCTAAGGAGTCGGCTGGTATGC-GCCATTCTTTATCTGGTGGAGCATGG 626 Query 570 GATCCACATGATGTAAATGCTGTTGCAGCAACGGGTGAATCATCTGTTCAGTTCTGGGAC 629 ||||||||||||| ||| ||||||||||||| |||||||||| | ||||| ||||| Sbjct 627 AATCCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGAT 686 Query 630 TTGCGTACTATGAAGAAGGTTAACTCAATTGAACATGCTCATGTACGCGGTGTTGATTAC 689 || |||||||||||||||| ||| |||||||||| ||| |||||||| |||||| ||| Sbjct 687 TTACGTACTATGAAGAAGGCTAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTAC 746 Query 690 AATCCCAAGAGAGAACATATACTTGTAACTGCAGAGGATGAATCTGGCATACATGTCTGG 749 |||| |||||||||||||||||| || ||||||| ||||||||||| |||||| ||||| Sbjct 747 AATCTCAAGAGAGAACATATACTCGTTTCTGCAGATGATGAATCTGGTATACATCTCTGG 806 Query 750 GATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTCCTGGTCATACACATTGGACTTGG 809 ||||| |||||| |||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct 807 GATCTTCGGAAGACCAATGTTCCTGTGCAAGAGCTCCCTGGTCATACACATTGGACATGG 866 Query 810 GCTGTCAGGTGTAACCCTGAGTATGATG-GACTGATTCTGAGCGCTGGAACAGATTCGGT 868 |||||||||||||||||||||||||| | | || |||||||||| ||||||||| || | Sbjct 867 GCTGTCAGGTGTAACCCTGAGTATGAAGAG-CTAATTCTGAGCGTTGGAACAGACTCAGC 925 Query 869 TGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATGACAAAACCTCAGAAAGTCCTGT 928 ||||||| |||||| ||| |||||| | | ||||| | |||||| ||| ||| || || Sbjct 926 TGTCAACTTGTGGTTTGCATCAGCATC-T--AGTGAAAATAAAACCGCAGGAAGCCCGGT 982 Query 929 GGAATCCA-CACGACAGCGTGTGAACCCGTTGCTCAACTCATACACTGACTATGAAGACA 987 |||| | | |||| |||||||||||||| ||||| || || || |||||||| ||||||| Sbjct 983 GGAAGC-ATCACGTCAGCGTGTGAACCCATTGCTAAATTCTTATACTGACTACGAAGACA 1041 Query 988 GTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGGTTTTTGCATCATTATCATATG 1047 ||||||| |||||||||||||| || |||||||||||| ||||||||||||| ||||||| Sbjct 1042 GTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATG 1101 Query 1048 ACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTCCAAGAATATAG 1097 |||| || || | || |||||||||||||||||||| ||||||| |||| Sbjct 1102 ACGGGAGGGTTGTGATTGAATCCGTCAAGCCTTTCCTACCAAGAAGATAG 1151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47386785831 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5