BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20550.1
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312970 jgi|Araly1|312970|fgenesh1_pm.C_scaffold_1001750 2676 0.0
Ahg476779 jgi|Araly1|476779|fgenesh2_kg.2__1909__AT1G76270.1 1277 0.0
Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1 185 1e-45
> Ahg312970 jgi|Araly1|312970|fgenesh1_pm.C_scaffold_1001750
Length=1707
Score = 2676 bits (1449), Expect = 0.0
Identities = 1626/1710 (95%), Gaps = 18/1710 (1%)
Strand=Plus/Plus
Query 226 ATGGCTTTTCAACGGCGGCGCAACAATTACTACAACCGTCTCCGTCGTCTTCTTCCTTTC 285
||||||||||| ||||||||| |||||||||||||||||||||||| ||| || |||||
Sbjct 1 ATGGCTTTTCAGCGGCGGCGCTACAATTACTACAACCGTCTCCGTCTTCTCCTCCCTTTA 60
Query 286 ATTTGCGCTGtctctggagctcttctcatcctcttcgctcttctctccattctttcccct 345
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 ATTTGCGCCGTCTCTGGAGCTCTCCTTATCCTCTTCGCTCTTCTCTCCATTCTTTCCCCT 120
Query 346 cctcctGATGATTCCGATCGCCGCATCTCCAAGCATATTAACTATGGAGCCAATGATGAG 405
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 CCTCCTGATGATTCCGATCGCCGCATCTCCAAGCAGATTCACTATGGAGCCAATGATGAG 180
Query 406 AAGAAGAACACACCAGTGGTTTTCACAGTT-C-C-GAGAGGTGGA-GGAAGATCGGATCG 461
||||| |||| ||||||||||||||||||| | | |||||||||| |||| || ||||||
Sbjct 181 AAGAAAAACATACCAGTGGTTTTCACAGTTCCGCAGAGAGGTGGAGGGAA-ATTGGATCG 239
Query 462 TGATATCTGGCGTTCATGGAATGCTGAATTCTTTTATGGTTGTTGTAATGCAAGCAGCAA 521
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 240 TGATATCTGGCGTTCATGGAATGCTGAATTCTTTCATGGTTGTTGTAACGCAAGCAGCAA 299
Query 522 GTTCCCAAATGCTAAAGCAATTACTAGAAATGATCGATACTTGGCGATTGCCACTAGTGG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTCCCAAATGCTAAAGCAATTACTAGAAATGATCGATACTTGGCGATTGCCACTAGTGG 359
Query 582 CGGTTTAAACCAACAACGGACTGGTATTGTAGATGCTGTTGTTGCTGCAAGGATTCTAAA 641
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 360 TGGTTTAAACCAACAACGGACTGGAATTGTAGATGCTGTTGTTGCTGCACGGATTCTAAA 419
Query 642 CGCTACGCTTGTTATTCCGAAGTTGGACCAGAAATCCTACTGGAAAGATGCCAGTGACTT 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTACGCTTGTTATTCCGAAGTTGGACCAGAAATCCTACTGGAAAGATGCCAGTGACTT 479
Query 702 CTCGAACATTTTCGATGTTGATTGGTTTATGTCATTTCTCTCAAAAGATGTCAAAATCAT 761
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CTCGAACATTTTCGATGTCGATTGGTTTATATCATTTCTCTCAAAAGATGTCAAAATCAT 539
Query 762 TGAGAAACTTCCACAGAAAGGAGGGCAAACATGGAGCCCTCGCAGAATGCGTGTACCGAG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAGAAACTTCCACAGAAAGGAGGGCAAACATGGAGCCCTCGCAGAATGCGTGTACCGAG 599
Query 822 AAAATGCAATGAGAAATGCTATATCAATCGGGTGTTACCTGTTCTTCAGAAAAGGCATGC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAATGCAATGAGAAATGCTATATCAATCGGGTGTTACCTGTTCTTCAGAAAAGGCATGC 659
Query 882 AGTTCAATTGAATAAATTTGATTACAGACTCTCAAACAAGTTGAGAGATGATTTGCAGAA 941
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 AGTTGAATTGAATAGATTTGATTACAGACTCTCAAACAAGTTGAGAGATGATCTGCAGAA 719
Query 942 GCTGAGGTGTAGAGTAAACTATCATGCGCTTAAGTTTACTGATCCAATTCTTGAAATGGG 1001
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 GCTGAGGTGTAGAGTAAATTATCATGCGCTTAAGTTCACTGATCCAATTCTTGAAATGGG 779
Query 1002 TAACGAATTGGTCAGAAGAATGCGGAAAAGGAGCAAACACTTCATTGCTTTACATCTTAG 1061
||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 780 TAACGAATTGGTCCGAAGAATGCGGAAAAAGAGCAAGCACTTCATTGCTTTACATCTAAG 839
Query 1062 GTTTGAACCTGATATGCTCGCCTTCTCTGGATGTTACTATGGTGGTGGTGAGAAGGAGAA 1121
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 GTTTGAACCTGATATGCTCGCCTTCTCGGGATGTTACTATGGTGGTGGTGAGAAGGAGAA 899
Query 1122 GAAAGAGTTAGGAACAATCAGAAGGAGATGGAAAACTTTGCATGTAAATAACCCTGAAAA 1181
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 900 GAAAGAGTTAGGAACAATCAGAAGGAGATGGAAAACTTTACATGTAAATAACCCCGAAAA 959
Query 1182 GCAAAGGAGACAAGGAAGATGTCCACTTACACCAGAAGAAGTTGGATTAATGCTTAGAGC 1241
||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 960 GCAAAGGCGACAAGGAAGATGTCCGCTAACACCAGAAGAAGTTGGATTAATGCTTAGAGC 1019
Query 1242 TTTGGGATATGGAAGTGATGTTCATATATATGTTGCATCAGGTGAAGTTTATGGAGGAGA 1301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 TTTGGGATATGGAAGTGATGTTCATATATATGTTGCATCAGGTGAAGTATATGGAGGAGA 1079
Query 1302 AAAATCATTGGCTCCTTTGAAAGCACTTTTTCCACATTTCTATTCAAAAGACACCATAGC 1361
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AAAATCATTGGCTCCTTTGAAAGCACTTTTCCCACATTTCTATTCAAAAGACACCATAGC 1139
Query 1362 TACAAAAATGGAGTTAAAACCATTTTCTTCTTATTCTTCACGAATGGCTGCACTCGATTT 1421
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TACAAAAATGGAGTTAAAAGCATTTTCTTCTTATTCTTCACGAATGGCTGCACTTGATTT 1199
Query 1422 CCTTGTGTGTGACGAAAGCGATGTTTTCGTTACCAACAATAACGGAAACATGGCGAGAAT 1481
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCTTGTGTGTGATGAAAGCGATGTTTTCGTTACCAACAATAACGGAAACATGGCGAGAAT 1259
Query 1482 ATTAGCAGGTCGAAGGAGATACTTTGGACATAAACCAACAATTAGACCGAATGCGAAAAA 1541
|||||| |||||||||||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 1260 ATTAGCCGGTCGAAGGAGATATTTTGGACATAAACCGACAATTAGGCCAAATGCGAAAAA 1319
Query 1542 GCTATACAAGTTGTTTATGAGCAAAGAGAATACTACTTGGGAGGAGTTTGCTTCAAGAGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCTATACAAGTTGTTTATGAGCAAAGAGAATACTACTTGGGAGGAGTTTGCTTCAAGAGT 1379
Query 1602 GAGAACATTTCAGAAAGGATTCATGGGAGAACCAAAGGAGGTAAGAGCCGGAAAAGGTGA 1661
||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 1380 CAGAACATTTCAGAGAGGATTCATGGGAGAGCCAAAGGAAGTAAGAGCCGGAAGAGGTGA 1439
Query 1662 GTTTCATGAGAATCCAGCGGCTTGTATATGCGAAGATACTGATGCTAAAGTAAAAGCGGG 1721
||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || ||
Sbjct 1440 GTTTCATGAGAATCCAGCGGCTTGTATATGCGAAGATACCGATGCTAAGGCAAAGGCAGG 1499
Query 1722 AAAGATGGATTCGAGAAAA-TTCGGGAAGAAAGAGCAGAAA-GAAGATGAA--GA-TGCA 1776
||||||||||||||||||| || ||||||||| | || ||| || |||||| || || |
Sbjct 1500 AAAGATGGATTCGAGAAAACTT-GGGAAGAAAAA-CAAAAAAGATGATGAACAGAATGAA 1557
Query 1777 GA-GTTG-T-C-G--TCGTCAGAGACAGATTATGAGGAAGACCAAACTGATTTACAGGAC 1830
|| | | | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATGAAGATGCAGAGTCGTCAGAGACAGATTATGAGGAAGACCAAACTGATTTACAGGAC 1617
Query 1831 AGAGGCTTGTATAATGGTACGAGGTTAGATTATGATGATGCGTTATCGGTTTCAGAAGAG 1890
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1618 AGAGGATTGTATAATGGTACGAGGTTAGATTATGATGATGCATTATCTGTTTCAGAAGAG 1677
Query 1891 CCTGAGCTAGAAGAAATGCTATCAGATTGA 1920
||||||||||||||||||||||||||||||
Sbjct 1678 CCTGAGCTAGAAGAAATGCTATCAGATTGA 1707
> Ahg476779 jgi|Araly1|476779|fgenesh2_kg.2__1909__AT1G76270.1
Length=2225
Score = 1277 bits (691), Expect = 0.0
Identities = 1234/1495 (83%), Gaps = 41/1495 (3%)
Strand=Plus/Plus
Query 231 TTTTCAACGGCGGCGCAACAATTACTACAACCGTCTCCGTCGTCTTCTTCCTTTCATTTG 290
||| || ||||||||| || |||||||||||||||||||||||| || ||| || |||
Sbjct 178 TTTCCATCGGCGGCGCTACCCTTACTACAACCGTCTCCGTCGTCTCCTCCCTCTCGTTTT 237
Query 291 CGCTGtc-tctggagctcttctcatcctcttcgctcttctctccatt-ctttcccc-tcc 347
||| ||| ||| | |||| ||||| ||||||||| |||||| | || ||| |||| |
Sbjct 238 CGCCGTCTTCT-TATCTCTCCTCATTCTCTTCGCTTTTCTCT-CTTTCCTTGCCCCGT-T 294
Query 348 tcctGATGATTCCGATCGCCGCAT-CTCCAAGCATATTAACTA-TGGAGCCAATGATGAG 405
||| | ||||||||||| | | | ||||| || || ||| | | ||||||||| |
Sbjct 295 TCCCGGCGATTCCGATCG-C-CTTCCTCCACGC--GTTCGCTACT-CATCCAATGATGCG 349
Query 406 AAGAAGAACACACCAGTGGTTTTCACAGTTCCGAGAGGTGGAGGAAGATCGGATCGTGAT 465
| || | | | || ||||| | | ||||||||| |||||| ||||| ||||||||
Sbjct 350 ATCAA-AGC-TA-CA--GGTTTCCGTA-TTCCGAGAGCTGGAGGCAGATCAGATCGTGAC 403
Query 466 ATCTGGCGTTCATGGAATGCTGAATTCTTTTATGGTTGTTGTAATGCAAGCAGCAAGTTC 525
|||||||||||| | |||||||||||||||| ||| || | ||||| |||||||| |||
Sbjct 404 ATCTGGCGTTCACGAAATGCTGAATTCTTTTTTGGATGCAGCAATGCGAGCAGCAAATTC 463
Query 526 CCAAATGCTAAAGCAATTACTAGAAATGATCGATACTTGGCGATTGCCACTAGTGGCGGT 585
||||| | |||||| | || ||||||||||||||||||| || ||||||||||| |||
Sbjct 464 GCAAATTCGAAAGCAGTGACGAGAAATGATCGATACTTGGTAATCGCCACTAGTGGTGGT 523
Query 586 TTAAACCAACAACGGACTGGTATTGTAGATGCTGTTGTTGCTGCAAGGATTCTAAACGCT 645
|| ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||
Sbjct 524 TTGAACCAACAACGAACTGGAATTGTAGATGCAGTTGTTGCGGCAAGAATTCTAAATGCT 583
Query 646 ACGCTTGTTATTCCGAAGTTGGACCAGAAATCCTACTGGAAAGATGCCAGTGACTTCTCG 705
|| |||||| |||| ||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 584 ACTCTTGTTGTTCCCAAGTTAGACCAGAAGTCTTACTGGAAGGATGCCAGTGACTTCTCG 643
Query 706 AACATTTTCGATGTTGATTGGTTTATGTCATTTCTCTCAAAAGATGTCAAAATCATTGAG 765
| |||||||||||| |||||||||| |||||||| || | || |||||||| || ||
Sbjct 644 CATATTTTCGATGTTCATTGGTTTATATCATTTCTGTCTGACGACGTCAAAATTATAAAG 703
Query 766 AAACTTCCACAGAAAGGAGGGCAAACATGGAGCCCTCGCAGAATGCGTGTACCGA-GAAA 824
||||||||| ||||||||| | ||||||||| | | |||||||||||||| | | ||
Sbjct 704 CAACTTCCACTGAAAGGAGGCCGAACATGGAGTACAAGTAGAATGCGTGTACC-ACGGAA 762
Query 825 ATGCAATGAGAAATGCTATATCAATCGGGTGTTACCTGTTCTTCAGAAAAGGCATGCAGT 884
||| || |||| ||||||||| || || || |||||||||||||| ||||||||||||||
Sbjct 763 ATGTAACGAGAGATGCTATATTAACCGTGTTTTACCTGTTCTTCACAAAAGGCATGCAGT 822
Query 885 TCAATTGAATAAATTTGATTACAGACTCTCAAACAAGTTGAGAGATGATTTGCAGAAGCT 944
|||| |||| |||||||| || ||||| |||||||||||||| ||||| || || |||||
Sbjct 823 TCAACTGAACAAATTTGACTATAGACTTTCAAACAAGTTGAGCGATGACTTACAAAAGCT 882
Query 945 GAGGTGTAGAGTAAACTATCATGCGCTTAAGTTTACTGATCCAATTCTTGA-AATGGGTA 1003
|| ||||||||||| || ||||| || ||||| |||||||| || ||| | ||||||||
Sbjct 883 AAGATGTAGAGTAAATTACCATGCTCTAAAGTTCACTGATCCTATACTT-ACAATGGGTA 941
Query 1004 ACGAATTGGTCAGAAGAATGCGGA-AAAGGAGCAAACACTTCATTGCTTTACATCTTAGG 1062
| ||||||||| | | |||| || ||||||||||||||||||||||||||||| |||
Sbjct 942 ATGAATTGGTCCGGCGCATGC-GATTGAGGAGCAAACACTTCATTGCTTTACATCTAAGG 1000
Query 1063 TTTGAACCTGATATGCTCGCCTTCTCTGGATGTTACTATGGTGGTGGTGAGAAGGAGAAG 1122
||||||||||||||||| || ||||| || || || |||||||||||||| ||||| |||
Sbjct 1001 TTTGAACCTGATATGCTTGCATTCTCGGGGTGCTATTATGGTGGTGGTGATAAGGA-AAG 1059
Query 1123 AA-AGAG-TTAGGAACAATCAGAAGGAGATGGAAAACTTTGCATGTAAATAACCCTGAAA 1180
| ||| || | | |||| ||||| ||||||||||| || ||| | || ||||| || |
Sbjct 1060 GAGAGAACTT-GCAGCAATTAGAAGAAGATGGAAAACATTACATATTAACAACCCAGAGA 1118
Query 1181 AGCAAAGGAGACAAGGAAGATGTCCACTTACACCAGAAGAAGTTGGATTAATGCTTAGAG 1240
|||||||| ||||||||||||||||||| || ||||||||||| ||| | ||||||||||
Sbjct 1119 AGCAAAGGCGACAAGGAAGATGTCCACTCACTCCAGAAGAAGTCGGACTGATGCTTAGAG 1178
Query 1241 CTTTGGGATATGGAAGTGATGTTCATATATATGTTGCATCAGGTGAAGTTTATGGAGGAG 1300
||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1179 CTTTGGGATATGGCAGTGATGTTCATATATATGTCGCATCTGGTGAAGTATATGGAGGAG 1238
Query 1301 AAAAATCATTGGCTCCTTTGAAAGCACTTTTTCCACATTTCTATTCAAAAGACACCATAG 1360
|| |||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1239 AAGAATCCTTGGCTCCTTTGAAAGCACTCTTTCCACACTTCTATTCAAAAGACACTATAG 1298
Query 1361 CTACAAA--AATGGAGTTAAAACCATTTTCTTCTTATTCTTC-ACGAATGGCTGCACTCG 1417
||||||| || | ||||| |||| |||||||| || ||||| | |||||||||||||||
Sbjct 1299 CTACAAAGGAA-G-AGTTAGAACCTTTTTCTTCGTACTCTTCTA-GAATGGCTGCACTCG 1355
Query 1418 ATTTCCTTGTGTGTGACGAAAGCGATGT-TTTCGTTACCAACAATAACGGAAACATGGCG 1476
| |||||||| ||||| |||||||| || ||| || |||||||| || || || |||||
Sbjct 1356 ACTTCCTTGTTTGTGATGAAAGCGACGTATTT-GTAACCAACAACAATGGCAATATGGCA 1414
Query 1477 AGAATATTAGCAGGTCGAAGGAGATACTTTGGACATAAACCAACAATTAGACCGAATGCG 1536
| |||||| || || | ||||||||||| ||||||||||| || |||| ||||||||
Sbjct 1415 AAAATATTGGCTGGAAGGAGGAGATACTTGGGACATAAACCCACTGTTAGGCCGAATGCA 1474
Query 1537 AAAAAGCTATACA-AGTTGTTTATGAGCAAAGAGAATACTACTTGGGAGGAGTTTGC-TT 1594
|||||||| |||| | || || |||| ||||||||| || || |||||||||||| | ||
Sbjct 1475 AAAAAGCTTTACAGA-TTATTCATGAACAAAGAGAACACGACCTGGGAGGAGTTTTCATT 1533
Query 1595 CAAGAGTGAGAACATTTCAGAAAGGATTCATGGGAGAACCAAAGGAGGTAAGAGCCGGAA 1654
| |||| | | ||||||| ||| ||||||||||| |||||||| ||||||||||| |
Sbjct 1534 TA-GAGTCCGTTCGTTTCAGAGAGGGTTCATGGGAGAGCCAAAGGAAGTAAGAGCCGGTA 1592
Query 1655 AAGGTGAGTTTCATGAGAATCCAGCGGCTTGTATATGCGAAGATACTGATGCTAA 1709
|||||| ||||| ||||| ||| || | || |||||||||||||| || |||||
Sbjct 1593 GAGGTGAATTTCACGAGAACCCATCGACGTGCATATGCGAAGATACAGAGGCTAA 1647
> Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1
Length=1260
Score = 185 bits (100), Expect = 1e-45
Identities = 110/115 (96%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 2046 TCAAAGCAACTGAATATTGATACCGATAGAATCTTGGTGAATGATAGATAGATACATCAG 2105
||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1260 TCAAAGCAACTGAATATTGGTACCGAAAGAATCTGGGTGAATGATAGATAGATACATCAT 1201
Query 2106 GATCCACAAAGATTGTGTCAAAAGTACATTGTTTCAAATACAATAGTGCCAACTT 2160
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 GATCCACAAAGATTGTGTCAAAAGTACATTGCTTCAAATACAATAGTGCCAACTT 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81436943810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5