BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20560.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472286 jgi|Araly1|472286|fgenesh2_kg.1__2240__AT1G20560.1 2911 0.0
> Ahg472286 jgi|Araly1|472286|fgenesh2_kg.1__2240__AT1G20560.1
Length=1946
Score = 2911 bits (1576), Expect = 0.0
Identities = 1792/1895 (95%), Gaps = 19/1895 (1%)
Strand=Plus/Plus
Query 63 TACTACTTTTCCGGCGATAAAATCTATGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 122
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 15 TACTACTTTTCCGGCGAAAAAAACTAAGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 74
Query 123 CTACGTTCCTCTCACTCCGATCAGCTTCCTCGATAGATCTGCTGTCGTCTACGCTGACAG 182
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 75 TTACGTTCCTCTTACTCCAATCAGCTTCCTCGATCGATCTGCTGTCGTCTACGCTGACAG 134
Query 183 AGTCTCCATCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGTCTCCGTCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 194
Query 243 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 254
Query 303 GGCTCCAAACGTTCCAGCTATGGTTGAATTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 362
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 255 GGCCCCAAATATTCCAGCTATGGTTGAGTTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 314
Query 363 GCTCTGTACACTCAACATTCGTCATGATTCAT-CACTTGTTGCTGTCTTGCTT-AGACAT 420
|||||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||
Sbjct 315 GCTCTGTACACTCAACATTCGTCATGATTC-TGCACTTGTAGCTGTCTTA-TTGAGACAT 372
Query 421 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATAGCTGAAGGAGCTTGT 480
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 373 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATTGCTCAAGGAGCTTGT 432
Query 481 GAAATCCTCTCAAATAAAGGTGACAAGGTCCCGATTTTGGTCTTGATCCCAGAGCCTCTT 540
||||||||||| || || |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 433 GAAATCCTCTCGAAGAAGGGTGACAAGGTCCCTATTTTGGTCTTGGTCCCAGAGCCTCTT 492
Query 541 ACTCAATCTGTTTCAAGGAAGAAGAGATCTGAGGA--A-ATGATGGAATACGAAGATGTT 597
||||||||||||||| ||||||||||||||||||| | || |||| ||||||||||||
Sbjct 493 ACTCAATCTGTTTCAGGGAAGAAGAGATCTGAGGAGGATATAATGGTCTACGAAGATGTT 552
Query 598 GTAGCGATGGGGAAATCGGACTTCGAGGTTATACGACCAACAGATGAGTGTGATGCTATA 657
|| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||
Sbjct 553 GTGGCGATGGGGAAATCGGATTTCGAGGTTAAACGACCAACTGATGAGTGTGATCCTATA 612
Query 658 TCTGTTAATTACACATCAGGTACCACTTCAAGCCCCAAAGGTGTTGTTTATAGTCACAGA 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 613 TCTGTTAATTACACATCAGGTACCACTTCAAGTCCCAAAGGTGTTGTTTATAGTCACAGA 672
Query 718 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 732
Query 778 TATCTATGGACTAATCCCATGTTTCACTGCAATGGCTGGTGCTTATTGTGGGGTGTTACT 837
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 733 TATCTATGGACTAATCCCATGTTTCATTGCAATGGCTGGTGCTTATTGTGGGGTGTTACC 792
Query 838 GCTATTGGTGGGACTAATATATGTTTGAGGAATGTTACGGCCAAGGCTATATTTGATAAT 897
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 793 GCAATTGGTGGGACTAATATATGTTTGAGGAATGTGACGGCCAAGGCTATATTCGATAAT 852
Query 898 ATTTCCCAGCATAAGGTGACTCATATGGGAGGTGCGCCGACGATATTGAATATGATCATC 957
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 853 ATTTCCCAGCATAAGGTGACTCACATGGGAGGTGCGCCAACGATATTGAATATGATTATC 912
Query 958 AATGCGCCTGAATCTGAGCAGAAACCGCTTCCCGGGAAGGTGTCTTTTATAACCGGTGCT 1017
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 913 AATGCGCCTGAATCCGAGCAGAAACCGCTTCCCGGGAAGGTATCTTTTATAACCGGTGCT 972
Query 1018 GCACCGCCACCAGCTCATGTGATTTTCAAGATGGAAGAGTTGGGGTTTTCTATGTTTCAT 1077
||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 973 GCACCTCCACCAGCTCACGTGATTTACAAGATGGAAGAGTTGGGCTTTTCTATGTTTCAT 1032
Query 1078 TCCTATGGGTTAACTGAAACTTATGGACCAGGCACAATCTGTACATGGAAGCCTGAGTGG 1137
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1033 TCCTATGGGTTAACCGAAACTTATGGACCAGGCACCATCTGTACATGGAAACCTGAGTGG 1092
Query 1138 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCTC-GACAAGGCGTGAATCATTT 1196
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1093 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCCCTG-CAAGGCGTGAATCATTT 1151
Query 1197 AGGGCTCGAGGAAATACAAGTTAAAGACCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1256
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1152 AGGGATCGAGGAAATACAAGTTAAAGATCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1211
Query 1257 TGTGACTATGGGTGAAGTTGTCTTCAGAGGAAACACGGTGATGAATGGTTACTTAAAGAA 1316
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1212 TGTGACTATGGGTGAAGTTGTCTTCAGGGGAAACACAGTGATGAAGGGTTACTTAAAGAA 1271
Query 1317 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGTGGCGACTTAGGTGT 1376
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1272 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGCGGCGACTTAGGTGT 1331
Query 1377 TAAACACCCTGACGGATACATAGAGCTGAAAGACAGATCGAAAGACATTATAATCTCTGG 1436
||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 1332 TAAACACCCCGACGGATACATAGAGCTCAAAGACCGATCAAAAGACATTATAATCTCTGG 1391
Query 1437 AGGAGAAAACATTAGCTCGATTGAAGTCGAGTCTACTCTGTTCACTCACCCTTGTGTTCT 1496
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1392 AGGAGAAAACATTAGCTCGATTGAAGTCGAATCTACTCTGTTCACTCATCCTTGTGTACT 1451
Query 1497 TGAAGCAGCTGTAGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1556
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TGAAGCAGCTGTTGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1511
Query 1557 GAAACTTAAAGACGGGTCTAAGGCCAGTGCGGAGGAGCTTATTAGCTATTGCAGGGACCG 1616
|||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||
Sbjct 1512 GAAACTTAAAGATGGGTCTAAGGTCAGCGCGGAGGAGCTTATAAGTTATTGCAGGGACCG 1571
Query 1617 GCTTCCACATTATATGGCTCCGAGGAGTATTGTGTTTGAGGATCTTCCTAAAACATCGAC 1676
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1572 GCTTCCGCATTACATGGCTCCGAGGAGTATCGTGTTTGAGGATCTTCCTAAAACATCGAC 1631
Query 1677 TGGAAAAGTCCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGTAAGCTTATCAAA 1736
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1632 TGGAAAAGTTCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGGAAGCTTATCAAA 1691
Query 1737 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCT-TTCTTTGTTACTTCCAATCTCTACAA 1795
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1692 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCTCTT-TTTGTTACTTCCAATCTCTATGA 1750
Query 1796 GATGTCTTATAAATT-A---CTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCAGAA 1851
||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1751 GATGTCTTATAAATTTATTACTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCGGAA 1810
Query 1852 TGAGATA-CTAAAACCAATTTGTATGTTTCTGAAA-TAAATAAAACCGGGATGAAATTGT 1909
|| || | || ||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 1811 TG-GAAAACTTAAACCAAGTTGTATGTTTCTGAAAGTAA-TAAAACCGGGATGAAATTGG 1868
Query 1910 AATTCCGGAAGATTAGATCTATAGCATTCTGATTA 1944
|||||||||| |||||||| |||||||||||||
Sbjct 1869 AATTCCGGAAAATTAGATCCCCAGCATTCTGATTA 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5