BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20570.1
Length=2931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472287 jgi|Araly1|472287|fgenesh2_kg.1__2241__AT1G20570.1 4390 0.0
Ahg477227 jgi|Araly1|477227|fgenesh2_kg.2__2357__AT1G80260.1 3205 0.0
> Ahg472287 jgi|Araly1|472287|fgenesh2_kg.1__2241__AT1G20570.1
Length=2946
Score = 4390 bits (2377), Expect = 0.0
Identities = 2766/2953 (94%), Gaps = 29/2953 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGAGTCGTTGCTTCGTA-TTGATCACGCCGGCTTAGACACCCTAATTCCGGGAAT 59
||||| |||||||||||||| | |||||| ||| ||||||| || |||||||| |||
Sbjct 1 ATGTCCGAGTCGTTGCTTCG-AGTTGATCGCGCTTGCTTAGAAACGCTAATTCCAGGAGC 59
Query 60 GATGTGCAGTCACAGAGTTTGGACACACTCAGAACTAGCTCCTCCTTCAGTGAGCGTGAA 119
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 GATGTGCAGTCGCAGAGTTTGGACACACTCAGAACTAACTCCTCCTTCAGTGAGCGTGAA 119
Query 120 TGAATCCCATCTGGTGAAAGGTCTCTTACAAGCTTTGCAAGGTTTCTCTAGTCCCTTCAT 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAATCCGATCTGGTGAAAGGTCTCTTACAAGCTTTGCAAGGTTTCTCTAGTCCCTTCAT 179
Query 180 TTTCTGGGACCGAAAGGAACAAACTTTCCGCGCTAAAAGTGAGATACGAGTTTCTCATTT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TTTCTGGGACCAAAAGGAACAAACTTTCCGCGCTAAAAGTGAGATACGAGTCTCTCATTT 239
Query 240 GTCTCAGTCAAGCCTTCATGTCCTTCTCGCTGGATTTTTGTATGCTGCTACATGTTTGAA 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 240 GTCTCAGTCAAGCCTTCATGTCCTTCTCGCTGGATTTTTGTATGCCGCAACATGTTTGAA 299
Query 300 GCTTGTGGAGTCTATTGTTAG-TGGAATTAATGCCTCTCTTAAATCTCCTCCTACTTTAA 358
||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||
Sbjct 300 GCTTGTGGAGTCTATTGTT-GCTGGAATTAATACCTCTCTTAGATCTCCTCCTACTTTAA 358
Query 359 TGGCATTTTCGAACTCTGCCTCTGGTTGGCTTGAGGCAAATATTGCTTTGAATGAGGAAG 418
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGGATTTTCGAACTCTGTCTCTGGTTGGCTTGAGGCAAATATTGCTTTGAATGAGGAAG 418
Query 419 TGAAGATCAACGATTCTAATGTTGCTGTTACTCCAACTCTTTTGGGATTAACTAGTTCTT 478
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 419 TGAAGATCAACGATTCTAATGTTGCTGTCACTCCAACTCTCTTGGGATTAACTACTTCTT 478
Query 479 TATCTAGTCTGTGTTCAGATGCTGAATACCTTTTCCAAGTTGTACGAGGTGCGATCCCTC 538
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 TATCTAGTCTGTGTTCAGGTGCTGAATATCTTTTCCAAGTTGTACGAGGTGCGATCCCTC 538
Query 539 ATGCGTATTTTGAGTCGAGTTCGGCTATTTCAACAGCTGAAATTGCTGTGCACGTTCTTG 598
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 539 ATGCGTATTTTGAGTCGAGTTCAGCTATTTCAACCGCTGAAATTGCTGTCCACGTTCTTG 598
Query 599 ATTACCTTTACAAGAGGCTAGATGAAGTATGTCTTGTACAAGGTGGTGAGCTTGTGGCCG 658
||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||
Sbjct 599 ATTACCTTTACAAGAGGCTGGATGAAGTATGCCTTGTCCAAGGTGGTGAGGTTGTGGCCG 658
Query 659 TGGAAGGATTTCACATGTTATTGCAAATCTTTGCTGGAAGTTTATTGCCATATGTAGAGA 718
||||||||||||| || | ||||||| ||||||||||||||||||||||||||||| |
Sbjct 659 TGGAAGGATTTCATGTGCTGCTGCAAATATTTGCTGGAAGTTTATTGCCATATGTAGA-A 717
Query 719 G-TTTGGATTCATGGTTGTTTGAGGGAACTCTTGATGATCCTTTTGAAGAGTTGTTCTTT 777
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 718 GCTTTGGATTCATGGTTATTTGAAGGAACTCTTGATGATCCTTTTGAAGAGTTGTTTTTT 777
Query 778 ACAGCCAACCAATCGGTCTCGGTTAGCGATGCAGAGTTTTGGGAGAAAAGCTATCTGTTG 837
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCAGCCAACCAATCGGTCTCCGTTAGCGATGCAGAGTTTTGGGAGAAAAGCTATCTGTTG 837
Query 838 ACGAGGGTGCTGGGTCCAAAATCAAATGTAACTTCGCTAAATCAAAAGAAAGGGATGAGT 897
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 838 ACGAGGGTGCTGGGTCCAAAATCAAATGTAACTTCGCTAAATCAAAAGGAAGGAATGAGT 897
Query 898 GGAAATGACTCCAATTCAGTTTCTGACAAAGACAAAGAGCAGAACAATCGGGTGTTATGC 957
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GGAAATGACTCCAATTCAGTTTCTGACAAAGACAAAGAGCAGAATAATCGGGTGTTATGC 957
Query 958 CCACTGTTCATAAAAGACATATGTAAGTCGATTGTTTCTGCTGGAAAGTCACTGCAGCTG 1017
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCACTATTCATAAAAGACATCTGTAAGTCGATTGTTTCTGCTGGAAAGTCACTGCAGCTG 1017
Query 1018 ATGCAGCATATTCCTTCTACGTCTTCAGAAAATTGTGAAAAGATTCAGTACCATGGGCGA 1077
|||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
Sbjct 1018 ATGCGGCATATTCCTTCTCCGTCTTCAGAAAAGTGTGGAAAGATTCAGTACCATGGGCAA 1077
Query 1078 AATGGTTTTGGGAATTCTGGCTGTGGCATACTCCTGGCTGGAAAGAATAGCTTTAGAAGC 1137
|||| |||||||||||| || |||||||||||||||||||| | ||| ||||||||||||
Sbjct 1078 AATGATTTTGGGAATTCGGGTTGTGGCATACTCCTGGCTGGGAGGAACAGCTTTAGAAGC 1137
Query 1138 ATTGCAGACTTATCCTTGTCTGAAATATTCTGTCTATCACTTGCTGGCCTCATAGGCCAT 1197
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 ACTGCAGACTTATCCTTGTCTGAAATCTTCTGTCTATCACTTGCTGGCCTCATAGGCCAT 1197
Query 1198 GGTGATCATGTATCTAGATATCTGTGGAAAGATGAGACAGATGAGTGGGAGATTTCTCCT 1257
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGTGATCATGTATCTAGATACCTGTGGAAAGATGAGACAGATGAGTGGGAGATTTCTCCA 1257
Query 1258 ACTTTAGCATCATATATAAGTGGTAA-GCTAGTGAATGGCACA-G-G-T---G--A--TC 1306
||||| |||| |||||||||||| || ||||||| |||||||| | | | | | ||
Sbjct 1258 ACTTTGGCATTATATATAAGTGG-AAGGCTAGTGGATGGCACAGGTGATAGAGATATTTC 1316
Query 1307 --TTCTCACATACTCAGAGCGAATGTGGTATAAGTTGTTGGTTGGTGCTGTGCAAGAGAA 1364
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGCTCTCACATACTCAGACCGAATGTGGTATAAGTTGTTGGTTGGTGCTGTGCAAGAGAA 1376
Query 1365 AAAATCTATAGAAGCCAAATCAGAACTCCAGAGTCCATGTTGTGTTACTTGTGTTAAAGA 1424
|| ||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1377 AAGATCTATAGAGGCCAAATCAGAACTCCAGAGTCCATGTTATGTTAGTCGTGTTAAAGA 1436
Query 1425 AGaaaaaaaTGTTCTCGCTGCCGAAAAGGTGTTGCAGGGGTTGTTTTGTCATGAAAACCT 1484
|| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1437 CGAGAAAAATGTTCTCGTTGCCGAAAAGGTGTTGCAGCGGTTGTTTTGTCATGAAAACCC 1496
Query 1485 TGTTGTTTCAGCATCTAAAATGGATCTTGAGAGGAATAAAAATGCCTGGCATGTCTTGAA 1544
||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1497 TGTTGTTTCAGTATCTAAAATGGATCTTGAGAGGAATAAGAATGCATGGAATGTCTTGAA 1556
Query 1545 CTTATCAGAGAACTATTGTCTACCCTC-TCTAAATGATAAGAGTTTGTTGAGTGCTGTTT 1603
||||||| | |||||||| |||||||| | |||||||| |||||||||||||||||||||
Sbjct 1557 CTTATCACAAAACTATTGCCTACCCTCGT-TAAATGATGAGAGTTTGTTGAGTGCTGTTT 1615
Query 1604 TTGAGGGATCTGGCGTTGC--A-CCAAAATTTG-TCGGAACAAACTACAAATATGGATTC 1659
|||||||||||||||| || | || | ||| ||||||||||||||||| ||| |||
Sbjct 1616 TTGAGGGATCTGGCGTGGCAGATACAGGA-TTGACCGGAACAAACTACAAATTTGGGTTC 1674
Query 1660 CAATTCGGTAGATCTGAATATCTTTCTTCTCAAGATGACACCAAAATTCTAGAAACGTTA 1719
||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct 1675 CAATTCGGTAGATCTGAATATCTTTCTAATCAGGATGACACCCAAATTCTAGAAACGTTA 1734
Query 1720 TTTCCTTTTCCTACATTGCTGCCGTCATTCCAGTCGAAGCTCCATATGTCAGAATTCCTA 1779
||||||||||| ||||| || |||||||||||| |||||||||||||||||||||| |||
Sbjct 1735 TTTCCTTTTCCCACATTACTTCCGTCATTCCAGCCGAAGCTCCATATGTCAGAATTTCTA 1794
Query 1780 CCTTACCAAAAGAATAGTACACTTCCTTCAAGAGTTCTCAGCTGGATACTT-AGGACAGA 1838
|||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||
Sbjct 1795 CCTTTCCAAAAGAATAGTACACTTCCTTCCAGAGTTCTCAGCTGGATGCTTAAGG-CAGA 1853
Query 1839 GCCAAGGAATACTCTACTTCCTGTTGTAATAATGCAAGAATGCTTCACAATCAACATCAG 1898
| ||||| |||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1854 GACAAGGGATACTCCACTTCCTGTTGTAATAATGCAAGAATGCTTGACAATCTACATCAG 1913
Query 1899 GAGGCAGGTGGACAACATTAGCAAAGTGATTTTTTCAAAACTAATGAATGAATGGAAATT 1958
||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1914 GAGGCAGGTGGACGACATTGGCAAAGTGATTTTGTCAAAACTAATGAATGATTGGAAATT 1973
Query 1959 GATGCACGAACTTGCGGTGTTGCGTGCCATTTATTTGTTAGGTTCAGGGGACCTTCTGCA 2018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1974 GATGCACGAACTTGCGGTGTTGCGTGCCATTTACTTGTTAGGTTCAGGGGACCTTCTGCA 2033
Query 2019 GCATTTTTTGACTGTCATATTTGATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTT 2078
||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 2034 GCATTTTCTGACTGTCATATTCGATAGACTGAGCAAGGGAGAGTCATCAAATGATGATTT 2093
Query 2079 TGAGTTGAACATAATCATTCAGGAATCAATTAGAAATTCAGCTGATACCATGTTGTTAAG 2138
|||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2094 TGAGTTGAACATAATCCTTCAGGAATCTATTAGAAATTCAGCTGATGCCATGTTGTTAAG 2153
Query 2139 CAGTCCTGATGCATTGGTGGTATCTATTTCCAGTGAAGGGTGTTTGGACAGAGACAAAGA 2198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2154 CAGTCCTGATGCATTGGTGGTATCTATTTCCAGTGAAGGGTCTTTGGACAGAGACAAAGA 2213
Query 2199 TGACAAGGGCGACGTAAAATCCCTTTCTTCACCTCGTGAAAGCAGCGTTAACAATTATGC 2258
||||||||| ||||||||| ||| ||||||| ||||| ||||| |||||||||||| ||
Sbjct 2214 TGACAAGGGTGACGTAAAAACCCGTTCTTCAACTCGTAAAAGCCGCGTTAACAATTTTGG 2273
Query 2259 GATAGATTGCCTTGAATCTCTCAAATTCACATACAAGGTGCCGTGGCCGCTTGAGCTTAT 2318
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2274 GATAGATTGCCTTGAGTCTCTCAAATTCACATACAAGGTGCCGTGGCCGCTAGAGCTTAT 2333
Query 2319 TGCGAACAGCGAGGCCATTAAGAAGTATAACCAGGTCAAGCGAGCAAAATATGTGCTTGA 2378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2334 TGCGAACAGCGAGGCCATTAAGAAGTATAACCAGGTCAAACGAGCAAAATATGTGCTTGA 2393
Query 2379 TAAGGCACGAAGGTTGATGTGGAAGGGTAAAGGCTCTGCAACAAAAATCCGCAAGCACCA 2438
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 TAAAGCACGAAGGTGGATGTGGAAGGGTAAAGGCTCTGCAACAAAAATCCGCAAGCACCA 2453
Query 2439 CTGTTTACTGGAACAAAAGCTCCTCAATTTTGTGGATGCTTTTCATCAATACGTAATGGA 2498
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 TTGGTTACTGGAACAAAAGCTCCTCAATTTTGTGGATGCTTTTCATCAATACGTAATGGA 2513
Query 2499 TAGGGTATATCACACTGCTTGGCGTGAGCTGTGCGAAGCTATGGTAAAAGCAGGGTCTCT 2558
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2514 CAGGGTATATCACACTGCATGGCGTGAACTGTGCGAAGCTATGGTAAAAGCAGGGTCTCT 2573
Query 2559 AGATGAGGTCATAGATGTACACGAGACGTACTTGTTATCGATTCAGAGGCAATGTTTTGT 2618
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2574 AGATGAGGTCATAGATGTACATGAGACGTACTTGTTATCAATTCAGAGGCAATGTTTTGT 2633
Query 2619 GGTTCAAGAAAAGCTGTGGGCAATCATCGCAAGTCGGATCAACATGATTCTCGGTTTAGC 2678
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 2634 GGTTCAAGAAAAGCTGTGGGTAATCATCGCAAGTCGGATCAACATAATTCTCGGGTTAGC 2693
Query 2679 TCTAGAATTCTACTCAATACAACAGACGCTGAGCAGCGGTGGAGCAGTTTCAGCTATCAA 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 TCTAGAATTCTACTCAATACAACAGACGCTGAGCAGCGGTGGAGCAGTTTCAGCTATCAA 2753
Query 2739 GGCTAGATGGGAGATGGAGATAGACCGCATCGAGAAACAATTCGAGGACTGTATTGCTTT 2798
||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 2754 GGCTAGATGCGAAATGGAGATAGACCGCATTGAGAAACAATTTGAGGACTGTATTGCATT 2813
Query 2799 CCTCCTTAGAGTATTGACTTCGAAGAAGAATGTGGGACACTTCCCTCATCTGGCTGATTT 2858
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 2814 CCTCCTTAGAGTATTGACTTCGAAGCTGAACGTGGGACACTTCCCTCATCTGGCAGATTT 2873
Query 2859 GGTGACCAGAATCAATTACAATTATCACTACATGTCTGACACTGGAAGCTCGATGACTGC 2918
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2874 GGTGACCAGAATCAATTACAATTATCACTACATGTCTGACACTGGAAGCTTAATGACTGT 2933
Query 2919 TTCTGGATCATAG 2931
|||||||||||||
Sbjct 2934 TTCTGGATCATAG 2946
> Ahg477227 jgi|Araly1|477227|fgenesh2_kg.2__2357__AT1G80260.1
Length=3123
Score = 3205 bits (1735), Expect = 0.0
Identities = 2529/2898 (87%), Gaps = 111/2898 (4%)
Strand=Plus/Plus
Query 85 CACTCAGAACTAGCTCC-TCCTTCAGTGAGCGTGAATGAATCCCATCTGGTGAAAGGTCT 143
||||||||||| || || ||| ||||||||||||| ||||| ||||||||| ||| |
Sbjct 115 CACTCAGAACTGGC-CCTTCCCTCAGTGAGCGTGACTGAATTGGATCTGGTGAGAGG--T 171
Query 144 CTTACAAGCTTTGCAAGGTTTCTCTAGTCCCTTCATTTTCTGGGACCGAAA--GGAACAA 201
| | | ||||||||| | |||||||||||| |||||||||||| ||| || ||||
Sbjct 172 C-T---A---TTGCAAGGTCTGTCTAGTCCCTTCCTTTTCTGGGACC-AAACTGG-ACAA 222
Query 202 ACTTTCCGCGCTAAAAGTGAGATACGAGTTTCTCATTTGTCTCAGTCAAGCCTTCATGTC 261
||||||||||| |||||| | ||||| || || ||||||||||| ||||||||||| |||
Sbjct 223 ACTTTCCGCGCCAAAAGTCATATACGCGTCTCCCATTTGTCTCACTCAAGCCTTCACGTC 282
Query 262 CTTCTCGCTGGATTTTTGTATGCTGCTACATGTTTGAAGCTTGTGGAGTCTATTGTTAG- 320
|||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||| |
Sbjct 283 CTTCTCGCTGGATTCTTGTATGCCGCTACTTGTTTGAAGCTCGTGGAGTCTATCGTT-GC 341
Query 321 TGGAATTAATGCCTCTCTTAAATCTCCTCCTACTTTAATGGCATTTTC-GAACTCTGCCT 379
|| |||||| ||||||| | ||||||||||| |||||||| || || | |||||| ||
Sbjct 342 TGCCATTAATACCTCTCTCAGCTCTCCTCCTACCTTAATGGCGTTCTCTG-ACTCTGTCT 400
Query 380 CTGGTTGGCTTGAG-G---CA-A-ATATTGCTTTGAATGAGGAAGTGAAGATCAACGATT 433
| | ||||||||| | || | ||||||||||||| |||||||||| ||||||| |||
Sbjct 401 CCGCATGGCTTGAGAGACTCAGAGATATTGCTTTGAAAGAGGAAGTGATGATCAACAATT 460
Query 434 CTAATGTTGCTGTTACTCCAACTCTTTTGGGATTAACTAGTTCTTTATCTAGTCTGTGTT 493
|| || || ||||||||||||| || |||||||| || ||||||||||||||||| ||||
Sbjct 461 CTGATATTACTGTTACTCCAACCCTCTTGGGATTGACAAGTTCTTTATCTAGTCTTTGTT 520
Query 494 CAGATGCTGAATACCTTTTCCAAGTTGTACGA-G-GTGCGATCCCTCATGCGTATTTTGA 551
||| ||||||||| || || |||||||||| | | | |||||||||||| ||| ||||||
Sbjct 521 CAGGTGCTGAATATCTCTTACAAGTTGTAC-ATGCG-GCGATCCCTCATACGTTTTTTGA 578
Query 552 GTCGAGTTCGGCTATTTCAACAGCTGAAATTGCTGTGCACGTTCTTGATTACCTTTACAA 611
|| ||||| ||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct 579 TTCAAGTTCAACTATTTCCGCTGCTGAAATTGCTTTCCATGTTCTTGATTACCTTTACAA 638
Query 612 GAGGCTAGATGAAGTATGTCTTGTACAAGGTGGTGAGCTTGTGGCCGTGGAAGGATTTCA 671
|| ||| ||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 639 GAAGCTGGATGAAGTATGCCTTGTACAAGGTGGTGA-------G--GTGGAAGGATTTCA 689
Query 672 CATGTTATTGCAAATCTTTGCTGGAAGTTTATTGCCATATGTAGAGAGTTTGGATTCATG 731
|||| | |||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 690 CATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATG 749
Query 732 GTTGTTTGAGGGAACTCTTGATGATCCTTTTGAAGAGTTGTTCTTTACAGCCAACCAATC 791
|||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 750 CTTGTTTGAGGGAACACTTGATGATCCTTGTGAAGAGTTGTTTTTTACAGCCAACCAATC 809
Query 792 GGTCTCGGTTAGCGATGCAGAGTTTTGGGAGAAAAGCTATCTGTTGACGAGGGTGCTGGG 851
|||||| |||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 810 GGTCTCCGTTAACGATGCAGAGTTTTGGGAGAAAAGCTATCAGTTGATGAAGGTGCCCAA 869
Query 852 TCCAAAATCAAATGTAACTTCGCTAAATCAAAAGAAAGGGATGAGTGGAAATGACTCCAA 911
|||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| ||||
Sbjct 870 CCCAAAATCAAATGTAACTTCCCTAAATGAAAAGAAAGTAATGAGTGGACATGACGCCAA 929
Query 912 -T--TC---AGTTTCTGACAAAGACAAAGAGCAGAACAATCGGGTGTTATGCCCACTGTT 965
| || ||||||||||||||||||||||||||| | | |||||||||| ||| ||||
Sbjct 930 CTCGTCTTTAGTTTCTGACAAAGACAAAGAGCAGAATACTGGGGTGTTATGTCCATTGTT 989
Query 966 CATAAAAGACATATGTAAGTCGATTGTTTCTGCTGGAAAGTCACTGCAGCTGATGCAGCA 1025
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 990 CATTAAAGACATCTGTAAGTCTATTGTTTCTGCTGGAAAGTCACTGCAGCTGATGCAGCA 1049
Query 1026 TATTCCTTCTACGTCTTCAGAAAATTGTGAAAAGATTCAGTACCATGGGCGAAATGGTTT 1085
||||||||| |||||||||||||||| || ||||| ||||| ||||| ||||||||||||
Sbjct 1050 TATTCCTTCCACGTCTTCAGAAAATTCTGGAAAGACTCAGTTCCATGAGCGAAATGGTTT 1109
Query 1086 TGGGAATTCTGGCTGTGGCATACTCCTGGCTGGAAAGAATAGCTTTAGAAGCATTGCAGA 1145
|||||||||||||||||| | |||||||||| ||||| ||||||||| |||| ||||||
Sbjct 1110 TGGGAATTCTGGCTGTGGTAGACTCCTGGCTAAAAAGAGTAGCTTTAGTAGCACTGCAGA 1169
Query 1146 CTTATCCTTGTCTGAAATATTCTGTCT-ATCACTTGCTGGCCTCATAGGCCATGGTGATC 1204
|||||||||||||||| | || ||| | | |||| || ||| | ||||||||||||||||
Sbjct 1170 CTTATCCTTGTCTGAAGTCTTTTGTTTGA-CACTCGCCGGCTTTATAGGCCATGGTGATC 1228
Query 1205 ATGTATCTAGATATCTGTGGAAAGATGAGACAGATGAGTGGGAGATTTCTCCTACTTTAG 1264
|||| |||||||||||||||||||||||| | || |||||||||||||||| |||||||
Sbjct 1229 ATGTCTCTAGATATCTGTGGAAAGATGAGGCGGACAAGTGGGAGATTTCTCCAACTTTAG 1288
Query 1265 CATCATATATAAGTGGTA-AGCTAGTGAATGGCA--CA-GGT---GA---T-C--TTCTC 1311
|||||||||||||||| | |||| |||||||||| | | | || | | |||||
Sbjct 1289 CATCATATATAAGTGG-AGAGCTTGTGAATGGCATGGATGATAAAGATCTTCCAGTTCTC 1347
Query 1312 ACATACTCAGAGCGAATGTGGTATAAGTTGTTGGTTGGTGCTGTGCAAGAGAAAAAATCT 1371
|||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | ||
Sbjct 1348 ACATGCTCAGAGCGAATGTGGTATAAGTTGTTGGTTGATGCTCTGCAAGAGAAAAGAGCT 1407
Query 1372 ATAGAAGCCAAATCAGAACTCCAGAGTCCATGTTGTGTTACTTGTGTTAAAGAAGaaaaa 1431
|| || ||||||||||||||||||| | |||||| || ||| ||||||| || | |||
Sbjct 1408 ATGGAGGCCAAATCAGAACTCCAGAATGCATGTTATGCTACAGGTGTTAAGGATGGAAAT 1467
Query 1432 aaTGTTCTCGCTGCCGAAAAGGTGTTGCAGGGGTTGTTTTGTCATGAAAACCTTGTTGTT 1491
| || |||| ||||| |||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 1468 AGTGGTCTCACTGCCCAAAAGGCGTTGCAGGGGTTGTTCTGTAATGAAAACCTTGTTGTG 1527
Query 1492 TCAGCATCTAAAATGGATCTTGAGAGGAATAAAAATGCCTGGCATGTCTTGAACTTATCA 1551
|||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||
Sbjct 1528 TCAGTATCTAAAATGGATCTTGAGAGGAATAAAAATACTTGGAATGTCTTGAACTTGTCA 1587
Query 1552 GAGAACTATTGTCTACCCTCTCTAAATGATAAGAGTTTGTTGAGTGCTGTTTTTGAGGGA 1611
| |||||||||||||||||||| |||||| ||||| ||||||||||||||||||| | |
Sbjct 1588 CAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGAA 1647
Query 1612 TCTGGCGTTGC--A-CCAAAATT-TGTCGGAACAAACTACAAATATGGATTCCAATTCGG 1667
|||||||| || | | ||| || |||||||||||||||| ||| ||||| || ||
Sbjct 1648 TCTGGCGTGGCAGATGCTGGATTGAGT-GGAACAAACTACAAATTTGGTTTCCAGTTTGG 1706
Query 1668 TAGATCTGAATATCTTTCTTCTCAAGATGACACCAAAATTCTAGAAACGTTATTTCCTTT 1727
|||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||
Sbjct 1707 TAGATCTGAATATCTTTCTTCTCAGGATGACACCAGAATTCTAGAAACATTATTTCCCTT 1766
Query 1728 TCCTACATTGCTGCCGTCATTCCAGTCGAAGCTCCATATGTCAGAATTCCTACCTTACCA 1787
|||||| ||||| |||||||| ||| ||||||||||| ||||||||||| |||||| |||
Sbjct 1767 TCCTACTTTGCTTCCGTCATTACAGCCGAAGCTCCATCTGTCAGAATTCTTACCTTTCCA 1826
Query 1788 AAAGAATAGTACACTTCCTTCAAGAGTTCTCAGCTGGATACT-TAGGACAGAGCCAA-GG 1845
||||||||||||||||||||||||||||||||||||| | || ||| ||||||||| ||
Sbjct 1827 AAAGAATAGTACACTTCCTTCAAGAGTTCTCAGCTGGTTGCTAAAGG-CAGAGCCAATGG 1885
Query 1846 AATACTCTACTTCCTGTTGTAATAATGCAAGAATGCTTCACAATCAACATCAGGAGGCAG 1905
|||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1886 -ATACTCGACTTCCCGTTGTAATTATGCAGGAATGCTTCACAATTTACATCAGGAGGCAG 1944
Query 1906 GTGGACAACATTAGCAAAGTGATTTTTTCAAAACTAATGAATGAATGGAAATTGATGCAC 1965
|||||| ||||| ||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1945 GTGGACTACATTGGCAAAGTGATTTTGTCAAAACTTATGAATGACTGGAAATTGATGCAC 2004
Query 1966 GAACTTGCGGTGTTGCGTGCCATTTATTTGTTAGGTTCAGGGGACCTTCTGCAGCATTTT 2025
|||||| | || |||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 2005 GAACTTTCTGTATTGCGTGCCATTTACTTGCTAGGTTCAGGGGACCTGCTGCAGCATTTT 2064
Query 2026 TTGACTGTCATATTT-GATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTTTGAGTT 2084
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 CTGACTGTCAT-TTTCGATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTTTGAGTT 2123
Query 2085 GAACATAATCA-TTCAGGAATCAATTAGAAATTCAGCTGATACCATG-TTGTTAAGCAGT 2142
||||||||| | ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 2124 GAACATAAT-ACTTCAGGAATCAATTAGAAATTCAGCTGATGCCATGCTT-TTAAGCAGT 2181
Query 2143 CCTGATGCATTGGTGGTATCTATTTCCAGTGAAGGGTGTTTGGACAGAGACAAAGATGAC 2202
|||||| |||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 2182 CCTGATTCATTGGTGGTATCTATATCCAGAGAA---------GACAGAGACAAAGATGAT 2232
Query 2203 AAGGGCGACGTAAAATCCCTTTCTTCACCTCGTGAAAGCAGCGTTAACA-ATTATGCG-A 2260
||||| ||| ||| | ||||||||||| ||||| ||||| ||||||||| || || | |
Sbjct 2233 AAGGGTGACATAATACCCCTTTCTTCAACTCGTAAAAGCCGCGTTAACAGCTT-TG-GAA 2290
Query 2261 TAGATTGCCTTGAATCTCTCAAATTCACATACAAGGTGCCGTGGCCGCTTGAGCTTATTG 2320
||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2291 TAGATTGTCTCGAGTCTCTCAAATTCACATACAAGGTGCCATGGCCGCTTGAGCTTATTG 2350
Query 2321 CGAACAGCGAGGCCATTAAGAAGTATAACC---------------------AGGTCAAGC 2359
| || || |||||||||||||||||||||| |||||||||
Sbjct 2351 CCAATAGTGAGGCCATTAAGAAGTATAACCAGGTGATGGGATTTTTGTTGAAGGTCAAGC 2410
Query 2360 GAGCAAAATATGTGCTTGATAAGGCACGAAGGTTGATGTGGAAGGGTAAAGGCTCTGCAA 2419
|||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 2411 GAGCAAAATATGTGCTTGATAAAGCACGAAGGTGGATGTGGAAGGGCAAAGGCTCTGCAA 2470
Query 2420 CAAAAATCCGCAAGCACCACTGTTTACTGGAACAAAAGCTCCTCAATTTTGTGGATGCTT 2479
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2471 CAAAAATTCGCAAGCACCACTGGTTACTGGAACAAAAGCTCCTCAACTTTGTGGATGCTT 2530
Query 2480 TTCATCAATACGTAATGGATAGGGTATATCACACTGCTTGGCGTGAGCTGTGCGAAGCTA 2539
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| || |
Sbjct 2531 TTCATCAATACGTAATGGACAGGGTATATCACACTGCGTGGCGTGAACTGTGCGAGGCGA 2590
Query 2540 TGGTAAAAGCAGGGTCTCTAGATGAGGTCATAGATGTACACGAGACGTACTTGTTATCGA 2599
||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||
Sbjct 2591 TGGTAAAAGCAGGGTCTCTGGATGAGGTCATATATGTACATGAGACCTACTTGTTATCGA 2650
Query 2600 TTCAGAGGCAATGTTTTGTGGTTCAAGAAAAGCTGTGGGCAATCATCGCAAGTCGGATCA 2659
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2651 TTCAGCGGCAATGCTTTGTGGTTCAAGAAAAGCTGTGGGCAATCATTGCAAGTCGGATCA 2710
Query 2660 ACATGATTCTCGGTTTAGCTCTAGAATTCTACTCAATACAACAGACGCTGAGCAGCGGTG 2719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2711 ACATGATTCTCGGTTTAGCTCTAGAATTCTACTCAATACAACAGACACTGAGCAGCGGTG 2770
Query 2720 GAGCAGTTTCAGCTATCAAGGCTAGATGGGAGATGGAGATAGACCGCATCGAGAAACAAT 2779
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 2771 GAGCAGTTTCAGCCATCAAGGCTAGATGTGAAATGGAAATAGACCGCATCGAGAAACAAT 2830
Query 2780 TCGAGGACTGTATTGCTTTCCTCCTTAGAGTATTGA-CTTCGAAGAAGAATGTGGGACAC 2838
| ||||||||||||||||||||||| |||||||| | |||||||| |||||||||||||
Sbjct 2831 TTGAGGACTGTATTGCTTTCCTCCTCAGAGTATT-ATCTTCGAAGCTGAATGTGGGACAC 2889
Query 2839 TTCCCTCATCTGGCTGATTTGGTGACCAGAATCAATTACAATTATCACTACATGTCTGAC 2898
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2890 TTCCCTCATTTGGCTGATTTGGTGACCAGAATCAATTACAATTATCACTACATGTCAGAC 2949
Query 2899 ACTGGAAGCTCGATGACT 2916
|||||||||| |||||||
Sbjct 2950 ACTGGAAGCTTGATGACT 2967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110652161725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5